Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 8.8e-125 450.3 224 100.0
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 2.8e-91 339.0 220 73.6
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.8e-91 339.0 220 73.2
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 8.3e-91 337.4 223 73.1
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 1.4e-90 336.7 221 73.3
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 2.4e-90 335.9 223 72.6
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 3.1e-90 335.5 220 72.3
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.2e-89 333.6 217 73.3
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 5.9e-89 331.3 220 74.1
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 7.7e-89 330.9 221 71.9
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.0e-88 330.5 209 74.6
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 2.3e-88 329.3 219 71.2
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.9e-88 328.9 221 71.5
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 2.9e-88 328.9 223 71.3
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 5.0e-88 328.2 219 71.2
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 5.0e-88 328.2 218 71.6
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 6.6e-88 327.8 221 71.0
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 6.6e-88 327.8 227 69.2
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.5e-87 326.6 221 71.0
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 4.3e-87 325.1 220 70.0
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 4.3e-87 325.1 221 70.6
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 4.3e-87 325.1 218 73.4
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 9.5e-87 323.9 218 70.6
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.2e-86 323.6 221 71.0
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.6e-86 323.2 220 70.5
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.6e-86 323.2 218 72.5
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 2.1e-86 322.8 217 73.3
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 2.8e-86 322.4 219 70.8
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 3.6e-86 322.0 208 73.6
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 4.7e-86 321.6 220 70.0
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 6.1e-86 321.2 218 70.6
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 6.1e-86 321.2 213 70.9
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 6.1e-86 321.2 220 71.4
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 8.0e-86 320.9 221 67.9
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.0e-85 320.5 221 68.8
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 4.0e-85 318.5 226 67.7
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 4.0e-85 318.5 221 71.0
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 4.0e-85 318.5 230 68.7
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 7.5e-84 314.3 219 70.3
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 7.5e-84 314.3 219 70.3
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.5e-84 314.3 220 69.5
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 7.5e-84 314.3 220 69.5
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 1.7e-83 313.2 224 69.2
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 2.2e-83 312.8 220 68.6
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 3.7e-83 312.0 220 68.2
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 3.7e-83 312.0 217 67.3
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.4e-83 311.2 217 67.3
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 6.4e-83 311.2 220 69.1
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 6.4e-83 311.2 223 66.8
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 8.3e-83 310.8 218 69.3
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 8.3e-83 310.8 217 68.7
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 1.1e-82 310.5 220 69.1
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 2.4e-82 309.3 225 63.6
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.4e-82 309.3 218 68.8
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.4e-82 309.3 224 68.3
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 2.4e-82 309.3 220 67.7
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 3.2e-82 308.9 224 68.8
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 4.1e-82 308.5 211 70.1
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 4.1e-82 308.5 218 68.8
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 5.4e-82 308.1 218 67.4
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 5.4e-82 308.1 248 62.5
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 7.0e-82 307.8 221 66.1
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 7.0e-82 307.8 216 68.5
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 7.0e-82 307.8 223 67.7
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 9.2e-82 307.4 223 65.9
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 1.2e-81 307.0 221 67.9
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.2e-81 307.0 220 70.0
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 1.6e-81 306.6 223 66.4
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.6e-81 306.6 216 67.1
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 2.7e-81 305.8 219 67.6
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 3.5e-81 305.4 223 66.4
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 3.5e-81 305.4 216 67.1
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 4.6e-81 305.1 227 64.8
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 4.6e-81 305.1 231 62.8
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 5.9e-81 304.7 221 66.1
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 5.9e-81 304.7 218 68.8
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 7.8e-81 304.3 208 66.8
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.3e-80 303.5 221 66.5
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 1.7e-80 303.1 222 65.8
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 2.3e-80 302.8 224 67.0
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 2.3e-80 302.8 217 69.1
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 3.0e-80 302.4 221 67.0
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 3.9e-80 302.0 227 64.8
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 8.6e-80 300.8 221 66.5
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 1.1e-79 300.4 221 67.0
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 1.1e-79 300.4 224 66.1
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.5e-79 300.1 229 63.3
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.5e-79 299.3 231 62.8
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 2.5e-79 299.3 231 62.8
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 7.3e-79 297.7 228 63.6
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 7.3e-79 297.7 222 64.9
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 9.5e-79 297.4 220 66.4
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.2e-78 297.0 218 67.0
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.1e-78 296.2 222 62.6
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 2.8e-78 295.8 223 64.1
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 4.7e-78 295.0 215 64.7
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 6.2e-78 294.7 216 64.8
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 1.4e-77 293.5 221 66.1
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 1.4e-77 293.5 221 66.1
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.4e-77 293.5 223 61.9
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 8.9e-77 290.8 219 63.9
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.5e-76 290.0 216 64.8
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.0e-76 289.7 223 64.1
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 7.5e-76 287.7 228 62.3
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 1.3e-75 287.0 221 66.1
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.7e-75 286.6 219 63.5
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 2.9e-75 285.8 221 61.5
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 2.9e-75 285.8 216 63.4
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 6.4e-75 284.6 227 63.4
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 1.4e-74 283.5 218 61.0
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 1.4e-74 283.5 221 61.5
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 4.1e-74 282.0 216 62.5
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 5.4e-74 281.6 221 65.2
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 9.2e-74 280.8 219 62.6
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.6e-73 280.0 320 48.1
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.9e-71 273.1 308 49.7
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 7.3e-71 271.2 218 58.7
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.8e-70 269.2 218 56.9
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 5.2e-69 265.0 226 58.0
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 1.5e-68 263.5 352 44.3
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 3.4e-68 262.3 219 56.6
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.2e-65 253.8 177 67.8
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 3.5e-65 252.3 221 57.9
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.8e-61 240.0 153 73.9
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 5.8e-60 235.0 153 73.2
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 1.7e-59 233.4 152 72.4
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 1.1e-55 220.7 152 69.1
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.2e-54 217.2 176 61.4
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 2.2e-51 206.5 161 60.9
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 7.1e-50 201.4 135 66.7
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.3e-48 197.2 120 77.5
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 5.6e-47 191.8 196 54.1
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 7.3e-47 191.4 107 84.1
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 8.1e-46 188.0 219 47.9
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 5.8e-44 181.8 130 66.2
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.7e-40 170.2 111 71.2
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.7e-40 170.2 111 71.2
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 1.3e-38 164.1 99 74.7
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 5.3e-37 158.7 116 63.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 2.6e-36 156.4 95 74.7
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 3.4e-36 156.0 112 65.2
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 2.2e-35 153.3 191 41.4
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 4.6e-33 145.6 115 60.9
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 3.3e-31 139.4 116 62.1
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 2.8e-30 136.3 141 49.6
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 4.5e-28 129.0 87 69.0
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.1e-22 110.2 102 54.9
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 6.5e-19 98.6 123 48.0
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 8.5e-19 98.2 81 56.8
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 2.0e-12 77.0 57 64.9
PRCOL_00002610 Prasinoderma coloniale HOM05D004698 ORTHO05D333686 4.2e-10 69.3 165 30.9
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.2e-09 67.8 61 50.8
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.1e-09 67.0 79 40.5


User provided reference genes

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