Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.0e-243 846.7 542 100.0
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.0e-191 672.9 533 78.6
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 2.8e-52 210.7 537 36.1
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 1.8e-51 208.0 501 36.5
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.4e-46 191.8 531 33.7
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.2e-46 189.9 499 35.1
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.2e-45 188.7 492 36.8
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.1e-43 182.2 541 35.3
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 2.4e-43 181.0 504 34.3
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 3.1e-43 180.6 495 34.5
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 3.2e-40 170.6 541 32.7
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.4e-37 160.2 542 31.7
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 4.8e-36 156.8 532 32.0
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 8.3e-36 156.0 473 31.7
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 1.1e-35 155.6 495 33.1
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 1.4e-35 155.2 517 35.0
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 3.1e-35 154.1 521 37.0
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 9.1e-35 152.5 506 31.4
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.6e-34 151.8 493 32.3
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 2.0e-34 151.4 539 31.5
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 5.9e-34 149.8 535 32.0
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.0e-33 149.1 535 32.7
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.3e-33 148.7 503 31.0
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.7e-33 148.3 499 36.9
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.5e-32 145.2 465 31.8
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 4.2e-32 143.7 464 30.6
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 9.5e-32 142.5 498 33.1
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 3.6e-31 140.6 500 32.8
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 6.1e-31 139.8 494 30.6
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 8.0e-31 139.4 513 33.1
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.8e-30 138.3 496 31.2
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.8e-30 138.3 495 31.7
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.3e-30 137.9 515 31.1
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 2.3e-30 137.9 467 31.0
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.0e-30 137.1 535 30.5
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 5.2e-30 136.7 507 31.2
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 5.2e-30 136.7 507 31.2
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.2e-29 135.6 463 28.9
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.2e-29 135.6 526 32.7
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 4.4e-29 133.7 515 36.5
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 5.7e-29 133.3 489 30.5
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 9.8e-29 132.5 495 36.2
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.2e-28 131.3 486 30.0
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 2.8e-28 131.0 539 32.1
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 4.9e-28 130.2 300 36.0
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 4.9e-28 130.2 514 38.5
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.4e-27 128.6 318 35.8
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.8e-27 128.3 530 30.0
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.4e-27 127.9 474 28.1
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 3.1e-27 127.5 281 38.8
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 4.1e-27 127.1 476 30.5
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 4.1e-27 127.1 476 30.5
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 7.0e-27 126.3 519 38.5
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.2e-26 125.6 284 35.2
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.6e-26 125.2 520 30.2
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.6e-26 125.2 309 36.6
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.0e-26 124.8 513 28.8
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.7e-26 124.4 497 28.0
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 4.5e-26 123.6 518 35.9
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 5.9e-26 123.2 484 36.2
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.0e-25 122.5 505 28.3
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 1.7e-25 121.7 308 37.0
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.8e-25 120.6 503 37.6
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 5.0e-25 120.2 510 28.0
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 6.6e-25 119.8 549 40.4
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.1e-24 119.0 196 41.8
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.9e-24 118.2 266 37.2
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.9e-24 118.2 266 37.2
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.9e-24 118.2 549 40.3
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 2.5e-24 117.9 504 31.2
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 5.6e-24 116.7 520 29.8
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 7.3e-24 116.3 489 40.3
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.2e-23 115.5 315 37.8
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 2.8e-23 114.4 320 36.6
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 3.6e-23 114.0 310 32.6
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 4.7e-23 113.6 445 31.2
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 4.7e-23 113.6 545 29.0
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.0e-22 112.5 521 34.2
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.8e-22 111.7 517 28.2
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 4.0e-22 110.5 554 27.3
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 4.0e-22 110.5 312 34.9
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 5.2e-22 110.2 491 29.3
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 6.8e-22 109.8 426 29.1
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 6.8e-22 109.8 470 29.4
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.9e-22 109.4 506 27.1
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 1.2e-21 109.0 531 35.8
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.2e-21 109.0 161 44.1
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.2e-21 109.0 158 43.0
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 2.0e-21 108.2 531 26.2
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 2.0e-21 108.2 531 26.2
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 2.0e-21 108.2 515 30.1
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 4.4e-21 107.1 498 30.1
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 9.8e-21 105.9 555 29.2
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.7e-20 105.1 298 34.2
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.7e-20 105.1 499 29.1
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 3.7e-20 104.0 516 32.8
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 4.9e-20 103.6 459 41.6
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 4.9e-20 103.6 446 42.8
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.1e-19 102.4 545 28.8
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.4e-19 102.1 291 33.0
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.8e-19 101.7 458 29.9
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 2.4e-19 101.3 475 29.9
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.4e-19 101.3 562 40.7
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 4.1e-19 100.5 544 37.7
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 7.0e-19 99.8 578 27.7
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.2e-18 99.0 525 31.8
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 1.6e-18 98.6 231 39.8
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 2.0e-18 98.2 243 35.0
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 3.5e-18 97.4 231 40.3
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 3.5e-18 97.4 211 35.1
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.6e-18 97.1 310 31.9
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 5.9e-18 96.7 231 39.8
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.7e-17 95.1 534 33.0
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.7e-17 95.1 546 27.8
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.3e-17 94.7 586 27.0
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.0e-17 94.4 600 27.5
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 3.9e-17 94.0 231 36.8
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 3.9e-17 94.0 503 25.6
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 8.6e-17 92.8 199 35.7
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 3.3e-16 90.9 473 27.5
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.3e-16 90.5 419 28.6
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 7.3e-16 89.7 186 40.9
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 7.3e-16 89.7 549 28.6
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 9.5e-16 89.4 295 32.9
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 9.5e-16 89.4 395 29.1
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 9.5e-16 89.4 538 27.5
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.2e-15 89.0 197 38.6
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 1.6e-15 88.6 476 27.1
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 3.6e-15 87.4 446 27.8
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 6.2e-15 86.7 263 31.9
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 2.3e-14 84.7 477 27.9
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.1e-14 84.3 496 25.0
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.0e-14 84.0 457 35.7
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 5.2e-14 83.6 469 27.9
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 6.8e-14 83.2 452 26.5
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 1.2e-13 82.4 281 31.0
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.5e-13 82.0 505 28.5
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 5.8e-13 80.1 537 27.9
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.3e-12 79.0 128 47.7
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 2.2e-12 78.2 540 26.3
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.9e-12 77.0 473 25.6
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 1.4e-11 75.5 285 31.2
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 2.4e-11 74.7 183 35.0
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 3.2e-11 74.3 472 26.5
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.1e-11 73.9 430 27.7
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 5.4e-11 73.6 507 25.2
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 7.0e-11 73.2 488 25.6
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 7.0e-11 73.2 429 23.8
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.6e-10 72.0 382 26.4
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 2.0e-10 71.6 533 26.3
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 3.5e-10 70.9 125 44.0
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 3.5e-10 70.9 462 31.2
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 6.0e-10 70.1 469 26.2
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.0e-09 69.3 454 24.7
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.7e-09 68.6 211 31.3
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 1.7e-09 68.6 111 41.4
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 3.0e-09 67.8 161 39.8
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 3.9e-09 67.4 481 25.8
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 6.6e-09 66.6 63 68.3
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.1e-08 65.9 124 39.5
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 1.5e-08 65.5 530 25.7
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.9e-08 65.1 112 41.1
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 2.5e-08 64.7 501 26.9
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 4.3e-08 63.9 79 54.4
CBR_g55949 Chara braunii HOM05D003733 ORTHO05D004035 1.6e-07 62.0 71 57.7
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 2.1e-07 61.6 163 33.7
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 2.1e-07 61.6 50 58.0
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.1e-06 59.3 104 41.3
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 1.4e-06 58.9 132 34.8
Zm00001eb186830 Zea mays HOM05D003733 ORTHO05D004035 3.1e-06 57.8 258 29.8
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 6.8e-06 56.6 228 28.1


User provided reference genes

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