Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 5.0e-38 160.6 80 100.0
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.2e-36 156.0 81 98.8
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.2e-31 139.4 82 86.6
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 4.3e-26 120.9 81 75.3
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 9.7e-26 119.8 81 75.3
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 4.2e-21 104.4 78 69.2
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 9.4e-21 103.2 75 68.0
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 2.1e-20 102.1 78 62.8
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 4.7e-20 100.9 79 63.3
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 1.4e-19 99.4 78 61.5
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 1.8e-19 99.0 79 59.5
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 2.3e-19 98.6 75 66.7
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 3.0e-19 98.2 78 60.3
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 3.0e-19 98.2 78 60.3
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 3.0e-19 98.2 78 61.5
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 3.9e-19 97.8 79 62.0
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 3.9e-19 97.8 78 61.5
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 3.9e-19 97.8 78 61.5
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 5.1e-19 97.4 78 62.8
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 6.7e-19 97.1 79 60.8
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 8.8e-19 96.7 79 60.8
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 8.8e-19 96.7 103 54.4
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 1.5e-18 95.9 73 67.1
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 2.0e-18 95.5 82 59.8
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.0e-18 95.5 82 59.8
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 2.0e-18 95.5 80 61.2
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 3.3e-18 94.7 72 58.3
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 3.3e-18 94.7 80 58.8
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 4.4e-18 94.4 79 60.8
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 4.4e-18 94.4 78 62.8
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 5.7e-18 94.0 101 51.5
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 5.7e-18 94.0 78 60.3
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 7.4e-18 93.6 78 62.8
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 7.4e-18 93.6 81 64.2
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 7.4e-18 93.6 78 57.7
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 9.7e-18 93.2 77 58.4
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 1.3e-17 92.8 49 85.7
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 1.3e-17 92.8 78 61.5
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 1.7e-17 92.4 82 63.4
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 2.2e-17 92.0 104 53.8
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 2.8e-17 91.7 79 59.5
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 2.8e-17 91.7 102 52.9
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 2.8e-17 91.7 102 52.9
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 2.8e-17 91.7 99 50.5
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 3.7e-17 91.3 101 54.5
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 4.8e-17 90.9 80 56.2
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 4.8e-17 90.9 80 61.2
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 4.8e-17 90.9 101 52.5
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 6.3e-17 90.5 79 54.4
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 6.3e-17 90.5 99 48.5
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 6.3e-17 90.5 78 60.3
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 6.3e-17 90.5 81 59.3
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 8.2e-17 90.1 75 61.3
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 8.2e-17 90.1 81 59.3
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 1.1e-16 89.7 80 57.5
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 1.1e-16 89.7 81 59.3
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 1.4e-16 89.4 80 57.5
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 1.4e-16 89.4 75 56.0
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 1.4e-16 89.4 78 57.7
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 2.4e-16 88.6 104 51.9
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 2.4e-16 88.6 81 56.8
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 3.1e-16 88.2 104 51.0
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 3.1e-16 88.2 102 52.0
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 3.1e-16 88.2 75 58.7
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 3.1e-16 88.2 59 69.5
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 4.1e-16 87.8 75 58.7
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 5.3e-16 87.4 91 53.8
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 5.3e-16 87.4 91 53.8
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 7.0e-16 87.0 81 58.0
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 7.0e-16 87.0 81 58.0
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 7.0e-16 87.0 86 57.0
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 9.1e-16 86.7 79 59.5
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 9.1e-16 86.7 79 60.8
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 1.2e-15 86.3 91 52.7
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 1.6e-15 85.9 75 53.3
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 1.6e-15 85.9 75 54.7
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 1.6e-15 85.9 104 47.1
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 1.6e-15 85.9 75 58.7
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 1.6e-15 85.9 104 48.1
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 2.0e-15 85.5 98 49.0
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 2.6e-15 85.1 71 57.7
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 2.6e-15 85.1 81 58.0
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 2.6e-15 85.1 101 47.5
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 3.5e-15 84.7 50 76.0
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 3.5e-15 84.7 50 82.0
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 3.5e-15 84.7 82 56.1
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 4.5e-15 84.3 78 57.7
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 7.7e-15 83.6 107 45.8
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 1.0e-14 83.2 97 50.5
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 1.3e-14 82.8 104 48.1
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 1.3e-14 82.8 83 59.0
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.3e-14 82.8 103 47.6
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 1.7e-14 82.4 97 47.4
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 2.2e-14 82.0 71 54.9
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 2.9e-14 81.6 102 47.1
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 3.8e-14 81.3 81 55.6
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 6.5e-14 80.5 80 55.0
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 8.5e-14 80.1 52 71.2
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 1.1e-13 79.7 77 58.4
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 1.9e-13 79.0 78 48.7
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 1.9e-13 79.0 98 45.9
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 4.2e-13 77.8 80 51.2
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 5.5e-13 77.4 76 53.9
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 7.2e-13 77.0 85 49.4
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 1.2e-12 76.3 58 60.3
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 2.1e-12 75.5 77 50.6
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 2.7e-12 75.1 101 43.6
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 3.6e-12 74.7 101 42.6
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 3.6e-12 74.7 101 42.6
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 8.0e-12 73.6 81 51.9
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 1.0e-11 73.2 82 51.2
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 5.2e-11 70.9 99 44.4
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 1.5e-10 69.3 78 51.3
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 3.3e-10 68.2 90 42.2
HanXRQChr06g0182851 Helianthus annuus HOM05D005333 ORTHO05D005776 4.4e-10 67.8 75 42.7
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 5.7e-10 67.4 48 62.5
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 9.7e-10 66.6 45 73.3
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 1.3e-09 66.2 100 38.0
AL5G13030 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 1.4e-08 62.8 55 61.8
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 1.4e-08 62.8 41 70.7
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 4.1e-08 61.2 44 56.8
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 4.1e-08 61.2 43 65.1
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 2.7e-07 58.5 41 73.2
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 4.5e-07 57.8 66 50.0
ATR0618G145 Amborella trichopoda HOM05D005333 ORTHO05D005776 7.7e-07 57.0 49 51.0
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 2.2e-06 55.5 67 46.3
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 2.2e-06 55.5 67 46.3
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 6.5e-06 53.9 38 63.2
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 6.5e-06 53.9 38 63.2
Medtr4g034810 Medicago truncatula HOM05D002824 ORTHO05D007162 8.5e-06 53.5 33 66.7


User provided reference genes

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