Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 5.8e-95 350.9 179 100.0
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.3e-58 228.8 176 68.8
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 4.0e-56 221.9 180 67.2
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 6.9e-56 221.1 176 68.2
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.0e-55 219.5 177 70.1
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.0e-55 219.5 177 70.1
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 2.0e-55 219.5 176 66.5
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.6e-55 219.2 172 71.5
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 7.6e-55 217.6 184 64.7
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.0e-54 217.2 188 63.8
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 6.5e-54 214.5 179 67.0
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.5e-54 214.5 179 65.4
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 6.5e-54 214.5 181 64.1
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 8.4e-54 214.2 179 67.0
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 2.5e-53 212.6 176 67.0
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 2.5e-53 212.6 179 67.0
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 2.5e-53 212.6 189 60.8
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 2.5e-53 212.6 189 60.8
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 3.2e-53 212.2 180 66.1
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 4.2e-53 211.8 179 63.7
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 5.5e-53 211.5 178 64.6
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 7.1e-53 211.1 182 65.4
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.2e-52 210.3 132 81.1
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 1.2e-52 210.3 176 66.5
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 1.6e-52 209.9 182 63.2
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 1.6e-52 209.9 179 64.2
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 1.6e-52 209.9 185 62.2
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 2.1e-52 209.5 187 63.6
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 2.1e-52 209.5 177 64.4
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.7e-52 209.1 181 66.9
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 3.5e-52 208.8 176 64.8
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 3.5e-52 208.8 176 65.9
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 6.1e-52 208.0 176 62.5
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 7.9e-52 207.6 177 64.4
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.0e-51 207.2 192 61.5
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 1.0e-51 207.2 182 62.1
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.0e-51 207.2 172 64.0
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 1.3e-51 206.8 182 61.0
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.3e-51 206.1 179 64.2
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.1e-51 204.9 177 63.8
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 5.1e-51 204.9 177 63.8
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.1e-50 203.8 179 62.6
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-50 203.8 178 65.2
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.1e-50 203.8 205 57.1
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.5e-50 203.4 179 62.0
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.5e-50 203.4 175 62.9
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.5e-50 203.4 175 62.3
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 1.9e-50 203.0 178 65.2
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.9e-50 203.0 177 63.8
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.5e-50 202.6 176 61.9
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 4.3e-50 201.8 176 66.5
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 5.7e-50 201.4 188 60.6
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 7.4e-50 201.1 176 63.1
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 7.4e-50 201.1 179 62.0
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 9.7e-50 200.7 179 62.0
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 1.3e-49 200.3 177 64.4
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 1.6e-49 199.9 185 60.5
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.2e-49 199.5 178 64.0
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.2e-49 199.5 178 64.0
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 2.2e-49 199.5 199 59.3
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.8e-49 199.1 179 62.6
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 2.8e-49 199.1 175 61.1
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 3.7e-49 198.7 175 58.9
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 3.7e-49 198.7 194 57.7
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 4.8e-49 198.4 181 61.3
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 8.2e-49 197.6 179 57.0
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 8.2e-49 197.6 175 61.7
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 1.1e-48 197.2 186 60.8
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.8e-48 196.4 179 62.6
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.4e-48 196.1 179 62.6
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 2.4e-48 196.1 176 62.5
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 2.4e-48 196.1 176 61.4
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 4.1e-48 195.3 179 62.6
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 6.9e-48 194.5 177 58.2
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 6.9e-48 194.5 183 59.0
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 6.9e-48 194.5 132 76.5
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 1.2e-47 193.7 184 58.2
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 4.5e-47 191.8 184 58.2
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 4.5e-47 191.8 150 70.0
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 2.2e-46 189.5 181 60.8
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 2.9e-46 189.1 185 60.0
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 8.5e-46 187.6 138 72.5
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 1.1e-45 187.2 182 61.5
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 3.2e-45 185.7 183 58.5
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 4.2e-45 185.3 184 58.2
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 5.5e-45 184.9 175 58.9
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 7.2e-45 184.5 187 56.7
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 7.2e-45 184.5 183 57.9
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 7.2e-45 184.5 177 59.9
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 1.6e-44 183.3 181 57.5
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 2.7e-44 182.6 175 58.3
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 2.7e-44 182.6 194 55.2
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 4.6e-44 181.8 183 56.3
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 6.1e-44 181.4 183 56.3
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 6.1e-44 181.4 183 56.3
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 6.1e-44 181.4 120 74.2
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.8e-43 179.9 181 56.9
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.8e-43 179.9 181 56.9
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 1.8e-43 179.9 181 56.9
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.3e-43 179.5 177 57.1
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 5.1e-43 178.3 175 56.6
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 5.1e-43 178.3 204 52.0
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 5.1e-43 178.3 175 57.7
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 6.7e-43 177.9 183 55.7
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 8.8e-43 177.6 175 57.1
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 8.8e-43 177.6 175 57.1
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 2.0e-42 176.4 179 55.9
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 9.7e-42 174.1 173 56.6
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 1.3e-41 173.7 160 61.2
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-41 173.7 184 53.8
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.2e-41 172.9 135 65.2
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 4.8e-41 171.8 177 54.2
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-40 170.6 178 58.4
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 2.4e-40 169.5 101 85.1
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.0e-35 154.1 157 57.3
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.8e-35 153.3 188 46.8
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.9e-35 152.1 138 60.1
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 5.1e-35 151.8 188 45.7
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 4.4e-34 148.7 90 81.1
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 5.7e-34 148.3 139 59.0
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 5.3e-32 141.7 106 67.9
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 5.0e-30 135.2 103 63.1
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 6.5e-30 134.8 142 56.3
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 1.1e-29 134.0 102 64.7
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 5.5e-29 131.7 123 55.3
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 7.2e-29 131.3 101 64.4
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 1.6e-28 130.2 101 63.4
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 6.1e-28 128.3 102 59.8
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 8.0e-28 127.9 107 62.6
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 1.0e-27 127.5 107 66.4
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 3.9e-27 125.6 126 51.6
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 9.7e-26 120.9 106 60.4
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 1.3e-25 120.6 90 70.0
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 3.5e-23 112.5 129 49.6
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 4.5e-23 112.1 93 57.0
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.0e-22 110.9 107 57.0
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.3e-22 110.5 103 53.4
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 2.9e-22 109.4 103 55.3
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 8.5e-22 107.8 92 58.7
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 5.5e-21 105.1 94 55.3
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 2.7e-20 102.8 105 51.4
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 3.6e-20 102.4 80 61.2
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.2e-19 98.6 88 62.5
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 1.5e-18 97.1 100 47.0
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.5e-18 97.1 104 52.9
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 6.3e-17 91.7 64 76.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.4e-16 89.7 77 66.2
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 5.4e-16 88.6 92 58.7
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 5.4e-16 88.6 81 56.8
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 7.0e-16 88.2 98 41.8
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.3e-14 84.0 89 49.4
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 7.2e-13 78.2 129 34.9


User provided reference genes

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