Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0592 Ceratophyllum demersum HOM05D005144 ORTHO05D006112 1.7e-187 659.1 312 100.0
CDE10G0687 Ceratophyllum demersum HOM05D005144 ORTHO05D006112 3.4e-159 565.1 310 87.7
MBI07_g40676_MAGBIO Magnolia biondii HOM05D005144 ORTHO05D006112 2.2e-97 359.8 307 58.3
TAR374G1437 Trochodendron aralioides HOM05D005144 ORTHO05D006112 5.5e-93 345.1 313 55.3
CSS0010562 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 6.8e-91 338.2 309 54.7
CSS0049427 Camellia sinensis var. sinensis HOM05D005144 ORTHO05D006112 6.8e-91 338.2 309 54.7
TAR375G0238 Trochodendron aralioides HOM05D005144 ORTHO05D006112 3.7e-89 332.4 313 54.0
Dinv37515 Davidia involucrata HOM05D005144 ORTHO05D006112 8.3e-89 331.3 322 52.5
Cfa011983 Carpinus fangiana HOM05D005144 ORTHO05D006112 2.4e-88 329.7 294 54.4
CiPaw.12G081400 Carya illinoinensis HOM05D005144 ORTHO05D006112 4.1e-88 328.9 314 53.5
Haze_09089 Corylus avellana HOM05D005144 ORTHO05D006112 4.1e-88 328.9 256 59.0
CsaV3_4G006720 Cucumis sativus L. HOM05D005144 ORTHO05D006112 5.9e-87 325.1 288 54.9
Actinidia04180 Actinidia chinensis HOM05D005144 ORTHO05D006112 1.3e-86 323.9 228 64.9
Ciclev10021394m.g Citrus clementina HOM05D005144 ORTHO05D006112 1.7e-86 323.6 223 65.5
MD06G1109700 Malus domestica HOM05D005144 ORTHO05D006112 1.7e-86 323.6 249 60.2
MELO3C016277.2 Cucumis melo HOM05D005144 ORTHO05D006112 5.0e-86 322.0 316 51.6
GSVIVG01019559001 Vitis vinifera HOM05D005144 ORTHO05D006112 5.0e-86 322.0 223 66.8
ClCG07G011500 Citrullus lanatus HOM05D005144 ORTHO05D006112 1.5e-85 320.5 318 51.3
Atru.chr9.1926 Acer truncatum HOM05D005144 ORTHO05D006112 1.9e-85 320.1 220 65.5
Hund14208 Selenicereus undatus HOM05D005144 ORTHO05D006112 2.5e-85 319.7 302 55.0
Prupe.5G122700 Prunus persica HOM05D005144 ORTHO05D006112 3.2e-85 319.3 272 57.4
PGR042G3213 Punica granatum HOM05D005144 ORTHO05D006112 4.2e-85 318.9 296 55.7
Thecc.03G300600 Theobroma cacao HOM05D005144 ORTHO05D006112 5.5e-85 318.5 248 60.1
MD14G1130800 Malus domestica HOM05D005144 ORTHO05D006112 7.2e-85 318.2 249 59.0
QL02p030059 Quercus lobata HOM05D005144 ORTHO05D006112 7.2e-85 318.2 223 64.1
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 1.2e-84 317.4 259 58.7
Lj4g0014592 Lotus japonicus HOM05D005144 ORTHO05D006112 2.1e-84 316.6 291 55.3
Manes.02G008400 Manihot esculenta HOM05D005144 ORTHO05D006112 2.1e-84 316.6 229 63.8
VMungo0251G3542 Vigna mungo HOM05D005144 ORTHO05D006112 2.1e-84 316.6 295 53.6
Cc08_g16260 Coffea canephora HOM05D005144 ORTHO05D006112 4.7e-84 315.5 221 63.3
Medtr8g099610 Medicago truncatula HOM05D005144 ORTHO05D006112 6.1e-84 315.1 294 55.4
Eucgr.E00882 Eucalyptus grandis HOM05D005144 ORTHO05D006112 8.0e-84 314.7 229 62.4
Manes.01G052400 Manihot esculenta HOM05D005144 ORTHO05D006112 1.0e-83 314.3 257 59.1
Duzib084G0361 Durio zibethinus HOM05D005144 ORTHO05D006112 3.0e-83 312.8 236 60.6
Hma1.2p1_0359F.1_g135130 Hydrangea macrophylla HOM05D005144 ORTHO05D006112 4.0e-83 312.4 319 51.1
Potri.001G089600 Populus trichocarpa HOM05D005144 ORTHO05D006112 4.0e-83 312.4 224 63.4
CANSAT21G0803 Cannabis sativa HOM05D005144 ORTHO05D006112 5.2e-83 312.0 219 64.8
Glyma.05G217900 Glycine max HOM05D005144 ORTHO05D006112 5.2e-83 312.0 294 53.4
TWI15G0686 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 5.2e-83 312.0 220 64.5
arahy.Tifrunner.gnm1.ann1.11VL1S Arachis hypogaea HOM05D005144 ORTHO05D006112 6.8e-83 311.6 220 65.5
arahy.Tifrunner.gnm1.ann1.72DNA3 Arachis hypogaea HOM05D005144 ORTHO05D006112 6.8e-83 311.6 220 65.5
Nitab4.5_0008496g0030 Nicotiana tabacum HOM05D005144 ORTHO05D006112 6.8e-83 311.6 294 52.4
Phvul.002G299800 Phaseolus vulgaris HOM05D005144 ORTHO05D006112 6.8e-83 311.6 236 61.9
EL10Ac5g12937 Beta vulgaris HOM05D005144 ORTHO05D006112 1.5e-82 310.5 224 63.8
Gorai.003G078400 Gossypium raimondii HOM05D005144 ORTHO05D006112 1.5e-82 310.5 231 61.0
Gorai.006G207000 Gossypium raimondii HOM05D005144 ORTHO05D006112 1.5e-82 310.5 289 53.6
RcHm_v2.0_Chr7g0194161 Rosa chinensis HOM05D005144 ORTHO05D006112 1.5e-82 310.5 272 57.4
CiPaw.11G119100 Carya illinoinensis HOM05D005144 ORTHO05D006112 2.0e-82 310.1 311 52.1
Gorai.008G256000 Gossypium raimondii HOM05D005144 ORTHO05D006112 2.0e-82 310.1 231 61.9
Gohir.A12G237800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 2.6e-82 309.7 231 61.9
TWI60G1459 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 2.6e-82 309.7 220 63.6
BcaB01g01559 Brassica carinata HOM05D005144 ORTHO05D006112 3.4e-82 309.3 226 64.6
FAN04G3040 Fragaria x ananassa HOM05D005144 ORTHO05D006112 3.4e-82 309.3 297 53.2
Duzib068G1441 Durio zibethinus HOM05D005144 ORTHO05D006112 4.4e-82 308.9 230 60.9
FAN13G1564 Fragaria x ananassa HOM05D005144 ORTHO05D006112 4.4e-82 308.9 257 58.0
FAN18G1164 Fragaria x ananassa HOM05D005144 ORTHO05D006112 4.4e-82 308.9 257 58.0
Psat7g024160 Pisum sativum HOM05D005144 ORTHO05D006112 4.4e-82 308.9 259 57.9
Sed0013108 Sechium edule HOM05D005144 ORTHO05D006112 4.4e-82 308.9 304 52.3
HPP92_003882 Vanilla planifolia HOM05D005144 ORTHO05D006112 4.4e-82 308.9 308 53.9
Ca_17470_v3 Cicer arietinum L. HOM05D005144 ORTHO05D006112 5.7e-82 308.5 219 65.3
Gohir.D09G184500 Gossypium hirsutum HOM05D005144 ORTHO05D006112 5.7e-82 308.5 289 53.3
Gohir.D12G238900 Gossypium hirsutum HOM05D005144 ORTHO05D006112 5.7e-82 308.5 231 61.5
Nitab4.5_0000798g0100 Nicotiana tabacum HOM05D005144 ORTHO05D006112 5.7e-82 308.5 269 55.4
HanXRQChr17g0534951 Helianthus annuus HOM05D005144 ORTHO05D006112 7.5e-82 308.1 313 51.8
Gohir.A02G099500 Gossypium hirsutum HOM05D005144 ORTHO05D006112 1.3e-81 307.4 231 61.0
Gohir.A09G189800 Gossypium hirsutum HOM05D005144 ORTHO05D006112 1.3e-81 307.4 278 53.6
Hma1.2p1_0440F.1_g153460 Hydrangea macrophylla HOM05D005144 ORTHO05D006112 1.3e-81 307.4 230 63.0
Glyma.08G024000 Glycine max HOM05D005144 ORTHO05D006112 1.7e-81 307.0 294 53.4
THA.LOC104815124 Tarenaya hassleriana HOM05D005144 ORTHO05D006112 1.7e-81 307.0 221 64.3
Thhalv10028928m.g Eutrema salsugineum HOM05D005144 ORTHO05D006112 2.8e-81 306.2 231 61.5
ATR0602G269 Amborella trichopoda HOM05D005144 ORTHO05D006112 3.7e-81 305.8 261 58.6
AL6G45020 Arabidopsis lyrata HOM05D005144 ORTHO05D006112 3.7e-81 305.8 242 60.3
Aa31LG9G11190 Aethionema arabicum HOM05D005144 ORTHO05D006112 6.3e-81 305.1 221 63.8
FAN18G2696 Fragaria x ananassa HOM05D005144 ORTHO05D006112 6.3e-81 305.1 257 57.2
AUR62019860 Chenopodium quinoa HOM05D002356 ORTHO05D006112 1.1e-80 304.3 227 62.6
BcaC04g21088 Brassica carinata HOM05D005144 ORTHO05D006112 1.4e-80 303.9 221 64.7
C09p35830 Brassica napus HOM05D005144 ORTHO05D006112 1.4e-80 303.9 221 64.7
BolC9t56417H Brassica oleracea HOM05D005144 ORTHO05D006112 1.4e-80 303.9 221 64.7
Gohir.D03G084200 Gossypium hirsutum HOM05D005144 ORTHO05D006112 1.4e-80 303.9 231 59.7
Carub.0006s2967 Capsella rubella HOM05D005144 ORTHO05D006112 1.8e-80 303.5 226 61.9
Rhsim07G0081500 Rhododendron simsii HOM05D005144 ORTHO05D006112 1.8e-80 303.5 276 55.1
AT4G10925 Arabidopsis thaliana HOM05D005144 ORTHO05D006112 3.1e-80 302.8 225 62.7
Lalb_Chr05g0224021 Lupinus albus HOM05D005144 ORTHO05D006112 3.1e-80 302.8 243 58.0
A09p28270 Brassica napus HOM05D005144 ORTHO05D006112 4.1e-80 302.4 221 64.3
BraA09t38396Z Brassica rapa HOM05D005144 ORTHO05D006112 4.1e-80 302.4 221 64.3
Cpa.g.sc634.1 Carica papaya HOM05D005144 ORTHO05D006112 7.0e-80 301.6 246 59.3
Potri.003G141600 Populus trichocarpa HOM05D005144 ORTHO05D006112 7.0e-80 301.6 224 62.1
Sp6g06570 Schrenkiella parvula HOM05D005144 ORTHO05D006112 7.0e-80 301.6 223 63.7
Solyc08g082560.3 Solanum lycopersicum HOM05D005144 ORTHO05D006112 7.0e-80 301.6 303 50.8
Sopen08g030810 Solanum pennellii HOM05D005144 ORTHO05D006112 7.0e-80 301.6 303 50.8
TPR.G3399 Trifolium pratense HOM05D005144 ORTHO05D006112 9.2e-80 301.2 222 62.2
THA.LOC104813044 Tarenaya hassleriana HOM05D005144 ORTHO05D006112 1.2e-79 300.8 214 64.0
Ah.12g052690 Amaranthus hybridus HOM05D005144 ORTHO05D006112 2.7e-79 299.7 224 62.5
Lsat_1_v5_gn_3_11240 Lactuca sativa HOM05D005144 ORTHO05D006112 3.5e-79 299.3 317 48.9
AUR62010862 Chenopodium quinoa HOM05D005144 ORTHO05D006112 4.5e-79 298.9 227 61.2
CARHR255680 Cardamine hirsuta HOM05D005144 ORTHO05D006112 5.9e-79 298.5 239 58.6
vmacro13890 Vaccinium macrocarpon HOM05D005144 ORTHO05D006112 1.3e-78 297.4 219 63.5
Aqoxy5G04282 Aquilegia oxysepala HOM05D005144 ORTHO05D006112 8.6e-78 294.7 309 48.9
CAN.G567.13 Capsicum annuum HOM05D005144 ORTHO05D006112 1.5e-77 293.9 296 50.0
Oeu038551.1 Olea europaea HOM05D005144 ORTHO05D006112 3.3e-77 292.7 228 58.8
FvH4_5g04920 Fragaria vesca HOM05D005144 ORTHO05D006112 4.3e-77 292.4 257 56.0
Actinidia22174 Actinidia chinensis HOM05D005144 ORTHO05D006112 7.3e-77 291.6 296 52.4
PSO135G1020 Papaver somniferum HOM05D005144 ORTHO05D006112 6.1e-76 288.5 229 59.4
PSO384G2099 Papaver somniferum HOM05D005144 ORTHO05D006112 6.1e-76 288.5 229 59.4
vmacro11343 Vaccinium macrocarpon HOM05D005144 ORTHO05D006112 1.0e-75 287.7 256 56.6
SalBow1G0822 Salvia bowleyana HOM05D005144 ORTHO05D006112 1.4e-75 287.3 281 51.2
ECA246G4745 Erigeron canadensis HOM05D005144 ORTHO05D006112 1.8e-75 287.0 218 62.8
Lj2C163G16 Lonicera japonica HOM05D005144 ORTHO05D006112 3.0e-75 286.2 204 62.3
Os01g0550200 Oryza sativa ssp. japonica HOM05D005144 ORTHO05D006112 3.0e-75 286.2 232 61.6
MSTRG.13890 Avicennia marina HOM05D005144 ORTHO05D006112 4.0e-75 285.8 223 58.7
MSTRG.1800 Avicennia marina HOM05D005144 ORTHO05D006112 6.8e-75 285.0 294 50.0
Migut.E01282 Erythranthe guttata HOM05D005144 ORTHO05D006112 8.9e-75 284.6 239 54.4
Sabra03G0102000 Salix brachista HOM05D005144 ORTHO05D006112 5.7e-74 282.0 238 57.1
Migut.A00621 Erythranthe guttata HOM05D005144 ORTHO05D006112 2.9e-73 279.6 304 48.0
Lsat_1_v5_gn_6_8420 Lactuca sativa HOM05D005144 ORTHO05D006112 8.3e-73 278.1 299 49.2
Zm00001eb356530 Zea mays HOM05D005144 ORTHO05D006112 1.4e-72 277.3 311 49.8
DCAR_006524 Daucus carota HOM05D005144 ORTHO05D006112 1.8e-72 276.9 217 58.5
MSTRG.11913 Avicennia marina HOM05D005144 ORTHO05D006112 1.2e-71 274.2 234 56.8
Zm00001eb162420 Zea mays HOM05D005144 ORTHO05D006112 9.5e-69 264.6 312 48.1
Peaxi162Scf00074g00636 Petunia axillaris HOM05D005144 ORTHO05D006112 2.3e-67 260.0 244 53.3
unitig_37.g12128 Utricularia gibba HOM05D000074 ORTHO05D007406 3.4e-66 256.1 203 56.7
Duzib205G1188 Durio zibethinus HOM05D005144 ORTHO05D006112 1.7e-65 253.8 230 53.0
SGA_v2.0_scaffold96G29029 Striga asiatica HOM05D005144 ORTHO05D006112 1.2e-63 247.7 293 43.0
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 2.0e-63 246.9 242 49.2
SGA_v2.0_scaffold111G31399 Striga asiatica HOM05D005144 ORTHO05D006112 2.0e-63 246.9 226 49.6
SalBow8G5178 Salvia bowleyana HOM05D005144 ORTHO05D006112 4.3e-61 239.2 265 44.5
CBR_g48131 Chara braunii HOM05D005144 ORTHO05D006112 7.3e-61 238.4 220 52.3
SEGI_08848 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 1.1e-59 234.6 220 53.2
AagrBONN_evm.TU.Sc2ySwM_362.2655 Anthoceros agrestis HOM05D005144 ORTHO05D006112 3.5e-55 219.5 227 47.6
SMO356G0181 Selaginella moellendorffii HOM05D005144 ORTHO05D006112 2.3e-54 216.9 212 48.6
Sc07g0010100 Simmondsia chinensis HOM05D005144 ORTHO05D006112 1.5e-53 214.2 172 58.7
Sabra01G0065900 Salix brachista HOM05D005144 ORTHO05D006112 4.7e-52 209.1 128 71.9
CARHR125070 Cardamine hirsuta HOM05D005144 ORTHO05D006112 5.8e-50 202.2 221 46.6
Carub.0007s1712 Capsella rubella HOM05D005144 ORTHO05D006112 7.6e-50 201.8 218 45.0
AT4G23960 Arabidopsis thaliana HOM05D005144 ORTHO05D006112 1.7e-49 200.7 215 46.5
SEGI_22496 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 2.6e-42 176.8 167 49.7
COL.COLO4_10724 Corchorus olitorius HOM05D005144 ORTHO05D006112 2.0e-34 150.6 275 35.6
Oeu028702.2 Olea europaea HOM05D005144 ORTHO05D006112 4.6e-31 139.4 123 52.8
SGA_v2.0_scaffold305G47994 Striga asiatica HOM05D005144 ORTHO05D006112 7.9e-31 138.7 245 34.3
AL7G29350 Arabidopsis lyrata HOM05D005144 ORTHO05D006112 2.1e-28 130.6 155 41.3
Nn1g00256 Nelumbo nucifera HOM05D005144 ORTHO05D006112 7.6e-26 122.1 95 60.0
Sabra01G0065800 Salix brachista HOM05D005144 ORTHO05D006112 2.1e-23 114.0 79 62.0
Sed0007412 Sechium edule HOM05D005144 ORTHO05D006112 7.4e-21 105.5 83 57.8
Oeu055032.1 Olea europaea HOM05D005144 ORTHO05D006112 2.8e-20 103.6 133 49.6
CDE05G0028 Ceratophyllum demersum HOM05D006158 ORTHO05D007065 3.7e-20 103.2 51 92.2
GSVIVG01000309001 Vitis vinifera HOM05D005144 ORTHO05D006112 3.4e-18 96.7 72 66.7
VMungo0540G0458 Vigna mungo HOM05D005144 ORTHO05D006112 4.3e-13 79.7 48 77.1
CDE01G0554 Ceratophyllum demersum HOM05D000712 ORTHO05D022034 9.3e-08 62.0 28 92.9
SEGI_40833 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 2.1e-07 60.8 62 45.2
AagrBONN_evm.TU.Sc2ySwM_228.2951 Anthoceros agrestis HOM05D005668 ORTHO05D007082 1.3e-06 58.2 140 25.7


User provided reference genes

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