Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 1.0e-75 286.6 140 100.0
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.0e-38 163.7 110 68.2
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.0e-38 163.7 110 69.1
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.3e-38 163.3 110 67.3
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 2.3e-38 162.5 110 70.0
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 2.3e-38 162.5 110 67.3
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 3.0e-38 162.2 110 70.0
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 8.7e-38 160.6 110 67.3
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.1e-37 160.2 110 67.3
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.5e-37 159.8 110 66.4
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.9e-37 159.5 110 67.3
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 2.5e-37 159.1 110 65.5
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 2.5e-37 159.1 110 67.3
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 2.5e-37 159.1 110 66.4
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 3.3e-37 158.7 110 66.4
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 3.3e-37 158.7 110 67.3
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.3e-37 158.7 110 64.5
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 5.6e-37 157.9 110 66.4
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 7.3e-37 157.5 110 66.4
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 7.3e-37 157.5 110 66.4
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 2.1e-36 156.0 110 68.2
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 2.1e-36 156.0 110 62.7
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 2.1e-36 156.0 110 62.7
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.8e-36 155.6 110 67.3
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 3.6e-36 155.2 110 65.5
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 3.6e-36 155.2 110 65.5
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.6e-36 155.2 110 62.7
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 3.6e-36 155.2 109 66.1
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.6e-36 155.2 111 64.0
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 3.6e-36 155.2 110 64.5
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 4.8e-36 154.8 110 62.7
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 6.2e-36 154.5 110 64.5
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 8.1e-36 154.1 109 65.1
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.1e-35 153.7 110 66.4
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.1e-35 153.7 110 63.6
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.1e-35 153.7 111 63.1
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 1.4e-35 153.3 110 62.7
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.4e-35 153.3 110 61.8
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 1.8e-35 152.9 110 66.4
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 1.8e-35 152.9 110 63.6
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.4e-35 152.5 110 64.5
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 3.1e-35 152.1 110 61.8
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 3.1e-35 152.1 110 60.9
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 3.1e-35 152.1 110 64.5
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.0e-35 151.8 111 59.5
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 4.0e-35 151.8 110 62.7
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 5.3e-35 151.4 110 67.3
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 6.9e-35 151.0 110 65.5
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 6.9e-35 151.0 110 62.7
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 1.2e-34 150.2 110 63.6
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.2e-34 150.2 110 62.7
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 2.0e-34 149.4 110 65.5
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 2.0e-34 149.4 110 64.5
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 2.6e-34 149.1 110 63.6
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 3.4e-34 148.7 110 64.5
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 3.4e-34 148.7 110 62.7
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 4.5e-34 148.3 110 63.6
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 4.5e-34 148.3 110 62.7
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 5.8e-34 147.9 111 61.3
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 7.6e-34 147.5 110 64.5
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 7.6e-34 147.5 110 62.7
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 9.9e-34 147.1 110 61.8
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 9.9e-34 147.1 110 61.8
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 1.3e-33 146.7 111 62.2
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 1.3e-33 146.7 110 64.5
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.7e-33 146.4 109 64.2
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 2.2e-33 146.0 110 63.6
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 2.9e-33 145.6 110 60.9
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 3.8e-33 145.2 110 62.7
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 3.8e-33 145.2 111 64.9
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.8e-33 145.2 110 60.0
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 3.8e-33 145.2 111 64.9
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 4.9e-33 144.8 110 61.8
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 6.4e-33 144.4 111 64.9
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 6.4e-33 144.4 110 61.8
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 1.4e-32 143.3 110 60.9
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 3.2e-32 142.1 110 60.0
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 4.2e-32 141.7 110 60.0
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 5.4e-32 141.4 110 60.0
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 9.3e-32 140.6 109 63.3
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.6e-31 139.8 110 59.1
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.6e-31 139.8 110 60.9
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 1.6e-31 139.8 110 59.1
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.1e-31 139.4 109 58.7
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.1e-31 139.4 107 60.7
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 2.7e-31 139.0 110 60.0
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 3.5e-31 138.7 108 62.0
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 3.5e-31 138.7 110 59.1
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 6.0e-31 137.9 111 62.2
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.0e-30 137.1 110 59.1
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.0e-30 137.1 110 59.1
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 1.3e-30 136.7 110 59.1
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 2.3e-30 136.0 111 61.3
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.0e-30 135.6 110 56.4
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 3.0e-30 135.6 110 59.1
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 3.9e-30 135.2 110 58.2
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 3.9e-30 135.2 110 57.3
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 5.1e-30 134.8 110 58.2
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 5.1e-30 134.8 110 58.2
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 5.1e-30 134.8 110 58.2
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 1.5e-29 133.3 110 61.8
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.5e-29 133.3 110 57.3
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.9e-29 132.9 119 56.3
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 3.3e-29 132.1 91 64.8
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 3.3e-29 132.1 110 58.2
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 5.6e-29 131.3 92 64.1
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 7.4e-29 131.0 101 63.4
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.6e-28 129.8 92 63.0
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 3.6e-28 128.6 99 60.6
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.1e-27 127.1 133 49.6
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 5.3e-27 124.8 110 54.5
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 5.3e-27 124.8 111 53.2
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 9.9e-26 120.6 110 55.5
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.2e-23 113.6 109 53.2
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 1.2e-23 113.6 110 51.8
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.8e-22 109.8 90 58.9
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.0e-19 98.6 131 43.5
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 6.9e-19 97.8 114 44.7
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 9.0e-19 97.4 66 69.7
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 3.4e-18 95.5 116 44.0
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.7e-17 93.2 72 62.5
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 2.9e-17 92.4 66 62.1
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.1e-16 90.5 100 51.0
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 1.4e-16 90.1 119 40.3
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.8e-14 83.2 66 63.6
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.4e-13 77.8 67 56.7
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.1e-12 76.3 110 40.9
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.4e-11 73.6 114 39.5
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.4e-11 72.8 86 46.5
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 5.3e-11 71.6 86 45.3
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 5.0e-09 65.1 41 70.7
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 6.5e-09 64.7 44 61.4
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 8.5e-09 64.3 46 63.0
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.4e-08 63.5 41 65.9
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 7.2e-08 61.2 114 35.1
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 9.3e-08 60.8 41 65.9


User provided reference genes

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