Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 2.6e-258 894.8 432 100.0
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.8e-158 563.1 319 80.9
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 3.7e-156 555.4 314 79.3
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 4.9e-156 555.1 410 66.3
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 5.0e-153 545.0 324 75.9
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 6.6e-153 544.7 307 79.8
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 8.6e-153 544.3 307 78.8
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 1.9e-152 543.1 319 76.2
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 7.3e-152 541.2 362 69.6
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 1.6e-151 540.0 311 75.9
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 4.7e-151 538.5 309 77.3
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 6.2e-151 538.1 309 78.3
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 8.0e-151 537.7 314 77.1
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 1.4e-150 537.0 382 68.1
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.4e-150 537.0 315 77.5
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 3.1e-150 535.8 307 78.2
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 4.0e-150 535.4 321 75.1
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 6.8e-150 534.6 308 76.3
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 8.9e-150 534.3 314 76.4
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 1.5e-149 533.5 307 77.2
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 2.0e-149 533.1 313 77.6
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 3.4e-149 532.3 332 73.8
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 4.4e-149 531.9 302 78.1
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 4.4e-149 531.9 320 73.4
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.8e-149 531.6 408 62.7
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 7.5e-149 531.2 403 64.0
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 9.8e-149 530.8 402 65.2
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 2.2e-148 529.6 409 62.1
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 2.2e-148 529.6 410 62.9
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 2.9e-148 529.3 318 75.8
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 2.9e-148 529.3 389 66.6
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 3.7e-148 528.9 321 74.5
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 8.3e-148 527.7 309 75.7
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 1.9e-147 526.6 335 70.7
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 3.2e-147 525.8 319 74.6
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 3.2e-147 525.8 309 76.4
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 7.0e-147 524.6 308 77.3
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 7.0e-147 524.6 308 77.3
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 7.0e-147 524.6 309 75.4
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 7.0e-147 524.6 309 75.4
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 7.0e-147 524.6 307 76.5
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 1.6e-146 523.5 331 71.9
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 1.6e-146 523.5 304 77.3
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 2.1e-146 523.1 322 73.6
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 3.5e-146 522.3 316 74.7
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 4.6e-146 521.9 321 73.8
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 4.6e-146 521.9 312 75.3
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 7.8e-146 521.2 306 75.2
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 1.7e-145 520.0 312 75.6
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 2.3e-145 519.6 312 75.0
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 2.3e-145 519.6 312 74.7
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 2.3e-145 519.6 306 76.5
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 3.0e-145 519.2 316 73.7
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.9e-145 518.8 331 70.1
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 3.9e-145 518.8 310 74.8
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 8.6e-145 517.7 319 74.6
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 8.6e-145 517.7 408 61.8
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 8.6e-145 517.7 302 76.8
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 1.5e-144 516.9 312 74.7
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 1.5e-144 516.9 311 74.0
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 1.9e-144 516.5 323 73.1
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 1.9e-144 516.5 307 75.2
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 2.5e-144 516.2 307 74.9
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 2.5e-144 516.2 396 64.1
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 3.3e-144 515.8 307 75.2
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 3.3e-144 515.8 322 72.4
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 5.6e-144 515.0 312 74.7
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 7.3e-144 514.6 318 73.9
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 2.8e-143 512.7 311 73.6
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 2.8e-143 512.7 316 71.2
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 2.8e-143 512.7 311 74.0
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 4.7e-143 511.9 302 77.2
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 8.1e-143 511.1 309 72.2
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 8.1e-143 511.1 314 73.9
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 1.1e-142 510.8 310 73.5
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.4e-142 510.4 310 73.9
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.3e-142 509.6 406 61.6
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 3.1e-142 509.2 332 70.5
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 2.6e-141 506.1 308 72.4
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 2.6e-141 506.1 321 69.2
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 4.4e-141 505.4 323 70.6
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 7.5e-141 504.6 325 70.8
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 7.5e-141 504.6 337 67.7
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 9.9e-141 504.2 309 72.8
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 3.7e-140 502.3 317 71.9
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 4.9e-140 501.9 321 69.8
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 8.3e-140 501.1 322 69.6
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 8.3e-140 501.1 311 71.1
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 1.9e-139 500.0 305 75.4
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.9e-139 500.0 309 72.8
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 2.4e-139 499.6 311 72.0
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 2.4e-139 499.6 302 73.8
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 7.1e-139 498.0 309 72.2
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 9.2e-139 497.7 340 67.9
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 4.6e-138 495.4 387 61.8
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 2.1e-135 486.5 302 73.5
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 1.1e-134 484.2 307 72.0
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 4.0e-134 482.3 310 68.4
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 4.4e-133 478.8 309 69.3
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 5.8e-133 478.4 322 68.3
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 9.9e-133 477.6 304 70.1
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 2.1e-127 459.9 305 67.5
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 5.8e-125 451.8 309 66.7
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 3.8e-124 449.1 315 65.7
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 1.1e-123 447.6 309 66.7
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 9.3e-123 444.5 313 63.9
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 2.7e-122 443.0 359 59.9
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 1.3e-121 440.7 297 66.3
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 8.7e-121 438.0 285 69.1
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 8.1e-119 431.4 302 66.6
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 1.4e-118 430.6 311 59.2
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 1.4e-118 430.6 302 66.9
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 9.0e-118 427.9 314 59.2
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 1.7e-116 423.7 430 52.8
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 1.7e-116 423.7 305 63.0
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 3.9e-113 412.5 426 51.6
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.6e-111 407.1 489 46.2
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 9.0e-110 401.4 316 60.1
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 3.8e-108 396.0 319 57.1
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 7.4e-96 355.1 218 72.5
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 1.8e-94 350.5 200 77.5
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 6.9e-94 348.6 209 74.6
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 7.7e-93 345.1 208 74.0
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 4.6e-90 335.9 251 64.5
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 7.9e-82 308.5 252 64.3
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 5.7e-80 302.4 309 47.2
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 6.3e-79 298.9 182 73.6
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 2.0e-77 293.9 176 72.7
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.5e-67 260.4 302 47.4
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 6.1e-50 202.6 208 48.1
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 8.9e-41 172.2 99 78.8
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 2.4e-38 164.1 167 48.5
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.7e-36 157.9 105 65.7
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 8.1e-34 149.1 86 73.3
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 3.2e-30 137.1 84 69.0
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 1.6e-29 134.8 91 70.3
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 5.6e-27 126.3 73 74.0
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 6.2e-26 122.9 81 69.1
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 8.1e-26 122.5 317 28.7
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 4.9e-23 113.2 311 28.0
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 3.5e-21 107.1 92 64.1
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 1.7e-12 78.2 146 32.9
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.8e-10 70.9 49 71.4
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.8e-10 70.9 49 63.3
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 3.1e-09 67.4 142 31.7
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 2.0e-08 64.7 62 46.8
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 8.4e-07 59.3 43 67.4


User provided reference genes

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