Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 9.7e-173 610.1 327 100.0
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 5.0e-129 464.9 373 72.4
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 3.0e-81 306.2 315 57.8
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.9e-80 303.5 324 55.6
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 5.6e-80 302.0 324 56.8
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 2.8e-79 299.7 331 55.6
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 3.6e-79 299.3 326 57.1
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 8.1e-79 298.1 329 56.2
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.2e-77 294.3 324 54.0
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 2.0e-77 293.5 326 55.8
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.7e-76 290.4 304 55.6
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 1.7e-76 290.4 327 53.8
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 2.2e-76 290.0 326 53.4
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 4.9e-76 288.9 320 56.2
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.4e-76 288.5 301 56.5
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 6.4e-76 288.5 301 56.5
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.4e-75 287.3 335 53.1
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.4e-75 286.6 299 56.5
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 9.3e-75 284.6 323 54.5
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 1.6e-74 283.9 323 55.7
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.6e-74 283.9 326 55.8
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.1e-74 283.5 325 53.8
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 2.7e-74 283.1 325 52.3
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 4.6e-74 282.3 339 52.2
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 1.3e-73 280.8 330 54.8
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 5.6e-72 275.4 330 53.6
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 3.7e-71 272.7 315 53.7
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 4.8e-71 272.3 344 50.3
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 6.2e-71 271.9 324 54.0
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.8e-70 270.4 348 51.4
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.5e-69 267.3 336 50.6
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.0e-69 266.9 325 50.2
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 2.0e-69 266.9 316 50.0
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.6e-69 266.5 353 49.9
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.3e-68 264.2 326 50.0
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 2.9e-68 263.1 334 52.4
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.1e-67 261.2 258 57.4
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.9e-67 260.4 326 49.4
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.5e-67 260.0 335 49.3
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 5.5e-67 258.8 347 50.4
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.1e-67 258.5 335 49.0
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 7.1e-67 258.5 332 49.1
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 9.3e-67 258.1 327 49.2
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 6.0e-66 255.4 326 50.6
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.0e-65 253.1 331 52.3
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 3.0e-65 253.1 258 53.5
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 5.1e-65 252.3 321 48.0
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.1e-64 251.1 371 45.3
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.5e-64 250.8 258 53.1
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.9e-64 250.4 258 52.7
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 4.3e-64 249.2 260 53.1
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 5.7e-64 248.8 350 46.9
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 9.6e-64 248.1 331 49.2
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 9.6e-64 248.1 371 45.3
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.6e-63 247.3 342 48.8
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.6e-63 247.3 329 48.0
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 2.8e-63 246.5 350 48.9
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 8.2e-63 245.0 335 47.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 8.2e-63 245.0 335 47.8
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 8.2e-63 245.0 336 49.7
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.4e-62 244.2 311 48.9
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 3.1e-62 243.0 359 47.6
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 3.1e-62 243.0 326 49.4
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 6.9e-62 241.9 335 46.6
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.2e-61 241.1 364 45.6
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 2.6e-61 240.0 381 45.4
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 3.4e-61 239.6 359 46.5
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 4.5e-61 239.2 326 48.2
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 5.8e-61 238.8 365 45.8
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 5.8e-61 238.8 334 47.9
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.3e-60 237.7 333 46.8
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.7e-60 237.3 343 47.8
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.9e-60 236.5 342 45.3
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.9e-60 236.5 340 45.6
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 5.0e-60 235.7 354 44.4
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.4e-59 234.2 310 48.7
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 1.9e-59 233.8 318 48.7
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 9.3e-59 231.5 333 47.4
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.6e-58 230.7 386 46.1
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 6.1e-58 228.8 331 45.9
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.0e-57 228.0 383 44.4
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 3.0e-57 226.5 308 47.1
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 6.7e-57 225.3 339 44.8
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 6.7e-57 225.3 284 48.6
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 3.7e-55 219.5 338 46.7
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.1e-54 216.5 326 48.2
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 4.1e-54 216.1 341 44.6
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 5.9e-53 212.2 246 54.5
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 7.7e-53 211.8 263 52.1
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.0e-52 211.5 350 44.3
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 6.5e-52 208.8 416 40.6
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.1e-51 208.0 392 40.8
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 3.2e-51 206.5 348 41.4
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.2e-51 206.1 294 44.6
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 4.2e-51 206.1 326 46.0
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 7.2e-51 205.3 331 42.9
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 7.2e-51 205.3 336 43.2
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 9.4e-51 204.9 360 43.3
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 1.6e-50 204.1 420 39.3
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 2.7e-50 203.4 421 39.0
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.0e-49 201.4 340 45.0
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.4e-49 201.1 414 39.4
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.4e-49 201.1 414 39.4
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 6.7e-49 198.7 412 38.8
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 2.0e-48 197.2 351 43.0
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 2.5e-48 196.8 318 44.7
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 3.3e-48 196.4 353 41.9
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 4.3e-48 196.1 396 40.7
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 2.2e-47 193.7 385 40.3
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 3.1e-46 189.9 444 36.7
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 7.7e-45 185.3 332 44.3
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 7.7e-45 185.3 265 49.8
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 6.5e-44 182.2 444 35.6
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 2.5e-43 180.3 294 43.9
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 3.2e-43 179.9 354 40.7
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 9.4e-43 178.3 364 39.8
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 3.6e-42 176.4 385 37.7
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 6.7e-41 172.2 263 46.0
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.3e-40 169.9 100 93.0
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 3.3e-40 169.9 316 41.8
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 3.2e-35 153.3 375 36.0
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 3.6e-34 149.8 213 47.4
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 6.1e-34 149.1 312 41.0
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 1.3e-31 141.4 312 40.1
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 4.8e-31 139.4 340 37.9
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 9.1e-30 135.2 98 73.5
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.9e-27 127.5 259 40.2
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 4.7e-26 122.9 314 36.3
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 2.2e-23 114.0 175 45.1
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.2e-21 108.2 331 33.8
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 4.4e-16 89.7 240 32.5
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 2.2e-15 87.4 125 41.6
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.8e-15 87.0 66 68.2
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.4e-14 84.7 82 56.1
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.4e-14 82.8 63 65.1
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 5.4e-14 82.8 61 65.6
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.6e-13 81.3 68 58.8
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 2.0e-13 80.9 61 63.9
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.7e-12 77.8 59 61.0
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 3.8e-12 76.6 113 44.2
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 1.9e-11 74.3 193 34.2
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 4.2e-11 73.2 247 34.4
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.1e-10 70.9 44 77.3
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 2.6e-08 63.9 44 72.7
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 4.1e-06 56.6 130 38.5


User provided reference genes

Program Settings