Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0293 Ceratophyllum demersum HOM05D002540 ORTHO05D002672 5.8e-71 270.8 136 100.0
CDE10G1049 Ceratophyllum demersum HOM05D002540 ORTHO05D002672 9.6e-50 200.3 111 91.0
MBI15_g19866_MAGBIO Magnolia biondii HOM05D002540 ORTHO05D002672 3.6e-20 102.1 102 56.9
PSO541G3508 Papaver somniferum HOM05D002540 ORTHO05D002672 1.7e-17 93.2 95 53.7
PSO675G4011 Papaver somniferum HOM05D002540 ORTHO05D002672 1.7e-17 93.2 84 57.1
TAR624G0818 Trochodendron aralioides HOM05D002540 ORTHO05D002672 1.7e-17 93.2 109 51.4
Nn1g07587 Nelumbo nucifera HOM05D002540 ORTHO05D002672 3.7e-17 92.0 111 47.7
Nn1g07714 Nelumbo nucifera HOM05D002540 ORTHO05D002672 3.1e-16 89.0 112 50.0
Aqoxy4G02311 Aquilegia oxysepala HOM05D002540 ORTHO05D002672 4.1e-16 88.6 113 48.7
Prupe.6G029700 Prunus persica HOM05D002540 ORTHO05D002672 7.7e-15 84.3 94 46.8
Lj1P896T35 Lonicera japonica HOM05D002540 ORTHO05D002672 1.0e-14 84.0 111 46.8
MD03G1038000 Malus domestica HOM05D002540 ORTHO05D002672 1.0e-14 84.0 94 46.8
VMungo0540G1137 Vigna mungo HOM05D002540 ORTHO05D002672 1.3e-14 83.6 65 58.5
Dinv40892 Davidia involucrata HOM05D002540 ORTHO05D002672 1.7e-14 83.2 121 44.6
MD11G1039100 Malus domestica HOM05D002540 ORTHO05D002672 1.7e-14 83.2 94 47.9
GSVIVG01014834001 Vitis vinifera HOM05D002540 ORTHO05D002672 2.2e-14 82.8 68 63.2
Phvul.006G059600 Phaseolus vulgaris HOM05D002540 ORTHO05D002672 3.8e-14 82.0 65 58.5
Sc20g0000120 Simmondsia chinensis HOM05D002540 ORTHO05D002672 5.0e-14 81.6 117 41.9
Glyma.18G073200 Glycine max HOM05D002540 ORTHO05D002672 8.5e-14 80.9 64 56.2
QL08p002517 Quercus lobata HOM05D002540 ORTHO05D002672 1.1e-13 80.5 75 54.7
COL.COLO4_07753 Corchorus olitorius HOM05D002540 ORTHO05D002672 2.5e-13 79.3 72 58.3
Gohir.D05G386100 Gossypium hirsutum HOM05D002540 ORTHO05D002672 2.5e-13 79.3 72 56.9
Potri.011G165500 Populus trichocarpa HOM05D002540 ORTHO05D002672 2.5e-13 79.3 65 55.4
Sabra16G0317600 Salix brachista HOM05D002540 ORTHO05D002672 3.2e-13 79.0 65 58.5
Cfa021907 Carpinus fangiana HOM05D002540 ORTHO05D002672 4.2e-13 78.6 65 56.9
CiPaw.11G207800 Carya illinoinensis HOM05D002540 ORTHO05D002672 5.5e-13 78.2 90 46.7
ClCG09G021630 Citrullus lanatus HOM05D002540 ORTHO05D002672 5.5e-13 78.2 98 43.9
Gohir.A04G003800 Gossypium hirsutum HOM05D002540 ORTHO05D002672 5.5e-13 78.2 72 55.6
Sabra11G0140000 Salix brachista HOM05D002540 ORTHO05D002672 5.5e-13 78.2 112 42.9
FAN16G0036 Fragaria x ananassa HOM05D002540 ORTHO05D002672 7.2e-13 77.8 78 50.0
Psat5g166080 Pisum sativum HOM05D002540 ORTHO05D002672 7.2e-13 77.8 109 42.2
Potri.001G468400 Populus trichocarpa HOM05D002540 ORTHO05D002672 7.2e-13 77.8 65 56.9
MELO3C013206.2 Cucumis melo HOM05D002540 ORTHO05D002672 9.4e-13 77.4 98 44.9
CsaV3_7G021460 Cucumis sativus L. HOM05D002540 ORTHO05D002672 9.4e-13 77.4 98 44.9
Gorai.009G452500 Gossypium raimondii HOM05D002540 ORTHO05D002672 9.4e-13 77.4 72 55.6
Thecc.07G006700 Theobroma cacao HOM05D002540 ORTHO05D002672 9.4e-13 77.4 75 54.7
Migut.H01732 Erythranthe guttata HOM05D002540 ORTHO05D002672 1.2e-12 77.0 100 45.0
FAN25G0764 Fragaria x ananassa HOM05D002540 ORTHO05D002672 1.2e-12 77.0 78 50.0
arahy.Tifrunner.gnm1.ann1.TIKF5B Arachis hypogaea HOM05D002540 ORTHO05D002672 1.6e-12 76.6 110 40.9
arahy.Tifrunner.gnm1.ann1.I0CGCG Arachis hypogaea HOM05D002540 ORTHO05D002672 2.7e-12 75.9 108 41.7
Duzib170G0936 Durio zibethinus HOM05D002540 ORTHO05D002672 2.7e-12 75.9 70 54.3
Lalb_Chr10g0107541 Lupinus albus HOM05D002540 ORTHO05D002672 3.6e-12 75.5 99 39.4
EL10Ac2g02478 Beta vulgaris HOM05D002540 ORTHO05D002672 4.7e-12 75.1 112 38.4
Duzib213G0829 Durio zibethinus HOM05D002540 ORTHO05D002672 4.7e-12 75.1 109 41.3
FvH4_3g42130 Fragaria vesca HOM05D002540 ORTHO05D002672 4.7e-12 75.1 78 50.0
FAN11G1438 Fragaria x ananassa HOM05D002540 ORTHO05D002672 4.7e-12 75.1 78 50.0
Lj6g0007577 Lotus japonicus HOM05D002540 ORTHO05D002672 4.7e-12 75.1 117 37.6
PGR083G2545 Punica granatum HOM05D002540 ORTHO05D002672 6.1e-12 74.7 61 59.0
arahy.Tifrunner.gnm1.ann1.0TKI11 Arachis hypogaea HOM05D002540 ORTHO05D002672 7.9e-12 74.3 99 39.4
arahy.Tifrunner.gnm1.ann1.8GRR8U Arachis hypogaea HOM05D002540 ORTHO05D002672 7.9e-12 74.3 99 39.4
Eucgr.F02015 Eucalyptus grandis HOM05D002540 ORTHO05D002672 7.9e-12 74.3 62 59.7
Manes.05G202300 Manihot esculenta HOM05D002540 ORTHO05D002672 7.9e-12 74.3 75 52.0
EL10Ac4g08478 Beta vulgaris HOM05D002540 ORTHO05D002672 1.0e-11 73.9 112 38.4
Lalb_Chr15g0082411 Lupinus albus HOM05D002540 ORTHO05D002672 1.0e-11 73.9 87 46.0
BcaNung02409 Brassica carinata HOM05D002540 ORTHO05D002672 1.4e-11 73.6 79 48.1
CANSAT01G1567 Cannabis sativa HOM05D002540 ORTHO05D002672 1.4e-11 73.6 62 54.8
SGA_v2.0_scaffold42G15944 Striga asiatica HOM05D002540 ORTHO05D002672 1.4e-11 73.6 112 35.7
TWI38G1877 Tripterygium wilfordii HOM05D002540 ORTHO05D002672 1.4e-11 73.6 65 53.8
FAN21G1605 Fragaria x ananassa HOM05D002540 ORTHO05D002672 1.8e-11 73.2 78 48.7
Sed0004536 Sechium edule HOM05D002540 ORTHO05D002672 1.8e-11 73.2 98 39.8
Solyc07g065910.1 Solanum lycopersicum HOM05D002540 ORTHO05D002672 1.8e-11 73.2 88 46.6
Ciclev10009287m.g Citrus clementina HOM05D002540 ORTHO05D002672 2.3e-11 72.8 96 41.7
Nitab4.5_0000152g0220 Nicotiana tabacum HOM05D002540 ORTHO05D002672 2.3e-11 72.8 116 39.7
Aa31LG5G11860 Aethionema arabicum HOM05D002540 ORTHO05D002672 3.0e-11 72.4 82 45.1
Phvul.008G282100 Phaseolus vulgaris HOM05D002540 ORTHO05D002672 3.9e-11 72.0 65 49.2
Rhsim06G0233100 Rhododendron simsii HOM05D002540 ORTHO05D002672 3.9e-11 72.0 62 56.5
CAN.G623.45 Capsicum annuum HOM05D002540 ORTHO05D002672 6.7e-11 71.2 86 46.5
AUR62017161 Chenopodium quinoa HOM05D002540 ORTHO05D002672 6.7e-11 71.2 71 46.5
Sopen07g034100 Solanum pennellii HOM05D002540 ORTHO05D002672 6.7e-11 71.2 88 45.5
CSS0001502 Camellia sinensis var. sinensis HOM05D002540 ORTHO05D002672 8.8e-11 70.9 80 50.0
PGSC0003DMG400022154 Solanum tuberosum HOM05D002540 ORTHO05D002672 8.8e-11 70.9 88 44.3
THA.LOC104811688 Tarenaya hassleriana HOM05D002540 ORTHO05D002672 8.8e-11 70.9 75 45.3
Glyma.14G010800 Glycine max HOM05D002540 ORTHO05D002672 1.1e-10 70.5 89 42.7
Oeu040392.1 Olea europaea HOM05D002540 ORTHO05D002672 1.1e-10 70.5 113 37.2
Peaxi162Scf00232g00110 Petunia axillaris HOM05D002540 ORTHO05D002672 1.1e-10 70.5 124 40.3
Sp6g17890 Schrenkiella parvula HOM05D002540 ORTHO05D002672 1.1e-10 70.5 76 46.1
BcaC04g20163 Brassica carinata HOM05D002540 ORTHO05D002672 1.5e-10 70.1 76 46.1
A10p13240 Brassica napus HOM05D002540 ORTHO05D002672 1.5e-10 70.1 76 46.1
C09p47130 Brassica napus HOM05D002540 ORTHO05D002672 1.5e-10 70.1 76 46.1
BolC9t57568H Brassica oleracea HOM05D002540 ORTHO05D002672 1.5e-10 70.1 76 46.1
BraA10t43422Z Brassica rapa HOM05D002540 ORTHO05D002672 1.5e-10 70.1 76 46.1
Glyma.02G303100 Glycine max HOM05D002540 ORTHO05D002672 1.5e-10 70.1 65 47.7
VMungo0647G0287 Vigna mungo HOM05D002540 ORTHO05D002672 1.5e-10 70.1 65 47.7
BcaB08g35970 Brassica carinata HOM05D002540 ORTHO05D002672 2.0e-10 69.7 76 46.1
HanXRQChr05g0160241 Helianthus annuus HOM05D002540 ORTHO05D002672 2.0e-10 69.7 67 52.2
Atru.chr2.3885 Acer truncatum HOM05D002540 ORTHO05D002672 2.6e-10 69.3 65 53.8
CSS0020481 Camellia sinensis var. sinensis HOM05D002540 ORTHO05D002672 2.6e-10 69.3 69 50.7
CSS0029249 Camellia sinensis var. sinensis HOM05D002540 ORTHO05D002672 2.6e-10 69.3 69 50.7
CANSAT01G0711 Cannabis sativa HOM05D002540 ORTHO05D002672 2.6e-10 69.3 110 33.6
Lsat_1_v5_gn_9_89201 Lactuca sativa HOM05D002540 ORTHO05D002672 2.6e-10 69.3 99 42.4
Ah.12g058290 Amaranthus hybridus HOM05D002540 ORTHO05D002672 3.3e-10 68.9 108 39.8
Thhalv10015852m.g Eutrema salsugineum HOM05D002540 ORTHO05D002672 3.3e-10 68.9 76 46.1
Carub.0007s1439 Capsella rubella HOM05D002540 ORTHO05D002672 4.4e-10 68.6 80 41.2
Sed0023567 Sechium edule HOM05D002540 ORTHO05D002672 4.4e-10 68.6 62 48.4
Zm00001eb033830 Zea mays HOM05D002540 ORTHO05D002672 4.4e-10 68.6 114 38.6
AT5G56050 Arabidopsis thaliana HOM05D002540 ORTHO05D002672 5.7e-10 68.2 83 43.4
BcaC09g50716 Brassica carinata HOM05D002540 ORTHO05D002672 5.7e-10 68.2 79 45.6
C01p22480 Brassica napus HOM05D002540 ORTHO05D002672 5.7e-10 68.2 79 45.6
BolC1t02179H Brassica oleracea HOM05D002540 ORTHO05D002672 5.7e-10 68.2 79 45.6
CARHR269420 Cardamine hirsuta HOM05D002540 ORTHO05D002672 5.7e-10 68.2 61 52.5
vmacro11620 Vaccinium macrocarpon HOM05D002540 ORTHO05D002672 5.7e-10 68.2 81 40.7
unitig_21.g20270 Utricularia gibba HOM05D002540 ORTHO05D002672 9.7e-10 67.4 88 45.5
ATR0751G089 Amborella trichopoda HOM05D002540 ORTHO05D002672 1.3e-09 67.0 97 43.3
AT4G26490 Arabidopsis thaliana HOM05D002540 ORTHO05D002672 1.3e-09 67.0 88 39.8
LjContig00081g0009254 Lotus japonicus HOM05D002540 ORTHO05D002672 1.3e-09 67.0 88 39.8
Thhalv10027581m.g Eutrema salsugineum HOM05D002540 ORTHO05D002672 1.7e-09 66.6 79 43.0
Actinidia10574 Actinidia chinensis HOM05D002540 ORTHO05D002672 2.2e-09 66.2 114 37.7
A01p17760 Brassica napus HOM05D002540 ORTHO05D002672 2.8e-09 65.9 79 44.3
BraA01t01731Z Brassica rapa HOM05D002540 ORTHO05D002672 2.8e-09 65.9 79 44.3
Medtr5g096680 Medicago truncatula HOM05D002540 ORTHO05D002672 3.7e-09 65.5 108 37.0
Carub.0008s1638 Capsella rubella HOM05D002540 ORTHO05D002672 6.3e-09 64.7 108 38.0
Sp7g24450 Schrenkiella parvula HOM05D002540 ORTHO05D002672 6.3e-09 64.7 79 41.8
AL5G15120 Arabidopsis lyrata HOM05D002540 ORTHO05D002672 8.2e-09 64.3 108 38.9
AL8G31630 Arabidopsis lyrata HOM05D002540 ORTHO05D002672 8.2e-09 64.3 61 49.2
Cc05_g15450 Coffea canephora HOM05D002540 ORTHO05D002672 1.8e-08 63.2 60 50.0
AL7G26430 Arabidopsis lyrata HOM05D002540 ORTHO05D002672 2.4e-08 62.8 64 45.3
CARHR234080 Cardamine hirsuta HOM05D002540 ORTHO05D002672 2.4e-08 62.8 79 40.5
PSO017G6151 Papaver somniferum HOM05D002540 ORTHO05D002672 2.4e-08 62.8 60 48.3
SGA_v2.0_scaffold168G38586 Striga asiatica HOM05D002540 ORTHO05D002672 3.1e-08 62.4 86 40.7
FAN22G0800 Fragaria x ananassa HOM05D002540 ORTHO05D002672 4.1e-08 62.0 65 47.7
Psat2g005760 Pisum sativum HOM05D002540 ORTHO05D002672 4.1e-08 62.0 62 48.4
arahy.Tifrunner.gnm1.ann1.5Z7E3S Arachis hypogaea HOM05D002540 ORTHO05D002672 5.3e-08 61.6 100 37.0
ClCG05G025920 Citrullus lanatus HOM05D002540 ORTHO05D002672 5.3e-08 61.6 104 34.6
HanXRQChr16g0529191 Helianthus annuus HOM05D002540 ORTHO05D002672 5.3e-08 61.6 56 51.8
Sed0006742 Sechium edule HOM05D002540 ORTHO05D002672 5.3e-08 61.6 116 32.8
AT3G26350 Arabidopsis thaliana HOM05D002540 ORTHO05D002672 7.0e-08 61.2 108 38.0
DCAR_007041 Daucus carota HOM05D002540 ORTHO05D002672 7.0e-08 61.2 59 49.2
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 9.1e-08 60.8 85 37.6
Migut.M01615 Erythranthe guttata HOM05D002540 ORTHO05D002672 9.1e-08 60.8 110 32.7
FAN17G1633 Fragaria x ananassa HOM05D002540 ORTHO05D002672 9.1e-08 60.8 59 50.8
Lsat_1_v5_gn_5_301 Lactuca sativa HOM05D002540 ORTHO05D002672 9.1e-08 60.8 67 46.3
PSO478G4230 Papaver somniferum HOM05D002540 ORTHO05D002672 9.1e-08 60.8 60 46.7
TPR.G1278 Trifolium pratense HOM05D002540 ORTHO05D002672 9.1e-08 60.8 62 43.5
HanXRQChr17g0569511 Helianthus annuus HOM05D002540 ORTHO05D002672 1.2e-07 60.5 67 44.8
Haze_12273 Corylus avellana HOM05D002540 ORTHO05D002672 1.5e-07 60.1 88 37.5
Gohir.A03G132800 Gossypium hirsutum HOM05D002540 ORTHO05D002672 1.5e-07 60.1 92 38.0
Oeu038644.1 Olea europaea HOM05D002540 ORTHO05D002672 1.5e-07 60.1 103 34.0
SalBow8G2302 Salvia bowleyana HOM05D002540 ORTHO05D002672 1.5e-07 60.1 56 50.0
SalBow8G4012 Salvia bowleyana HOM05D002540 ORTHO05D002672 1.5e-07 60.1 56 50.0
Carub.0005s0427 Capsella rubella HOM05D002540 ORTHO05D002672 2.0e-07 59.7 75 41.3
Cfa009238 Carpinus fangiana HOM05D002540 ORTHO05D002672 2.0e-07 59.7 96 38.5
Hma1.2p1_0815F.1_g222730 Hydrangea macrophylla HOM05D002540 ORTHO05D002672 2.6e-07 59.3 68 45.6
Nn3g16668 Nelumbo nucifera HOM05D002540 ORTHO05D002672 2.6e-07 59.3 59 44.1
Prupe.1G242600 Prunus persica HOM05D002540 ORTHO05D002672 2.6e-07 59.3 60 43.3
RcHm_v2.0_Chr4g0432721 Rosa chinensis HOM05D002540 ORTHO05D002672 2.6e-07 59.3 59 49.2
MD16G1103400 Malus domestica HOM05D002540 ORTHO05D002672 3.4e-07 58.9 60 45.0
Solyc05g013760.4 Solanum lycopersicum HOM05D002540 ORTHO05D002672 3.4e-07 58.9 59 47.5
Sopen05g008680 Solanum pennellii HOM05D002540 ORTHO05D002672 3.4e-07 58.9 59 47.5
MBI10_g08627_MAGBIO Magnolia biondii HOM05D002540 ORTHO05D002672 4.5e-07 58.5 75 40.0
Thhalv10004434m.g Eutrema salsugineum HOM05D002540 ORTHO05D002672 5.9e-07 58.2 76 43.4
Psat7g058800 Pisum sativum HOM05D002540 ORTHO05D002672 7.7e-07 57.8 99 38.4
Thecc.02G263800 Theobroma cacao HOM05D002540 ORTHO05D002672 7.7e-07 57.8 89 37.1
Aa31LG2G6160 Aethionema arabicum HOM05D002540 ORTHO05D002672 1.0e-06 57.4 64 43.8
CsaV3_5G030940 Cucumis sativus L. HOM05D002540 ORTHO05D002672 1.0e-06 57.4 77 37.7
CAN.G436.3 Capsicum annuum HOM05D002540 ORTHO05D002672 1.3e-06 57.0 59 45.8
MELO3C011935.2 Cucumis melo HOM05D002540 ORTHO05D002672 1.3e-06 57.0 77 37.7
PGSC0003DMG400011733 Solanum tuberosum HOM05D002540 ORTHO05D002672 1.3e-06 57.0 91 37.4
CARHR147360 Cardamine hirsuta HOM05D002540 ORTHO05D002672 1.7e-06 56.6 62 45.2
Glyma.05G173700 Glycine max HOM05D002540 ORTHO05D002672 1.7e-06 56.6 103 35.9
Glyma.08G131000 Glycine max HOM05D002540 ORTHO05D002672 1.7e-06 56.6 59 45.8
Medtr8g089695 Medicago truncatula HOM05D002540 ORTHO05D002672 1.7e-06 56.6 99 38.4
Rhsim12G0108200 Rhododendron simsii HOM05D002540 ORTHO05D002672 1.7e-06 56.6 83 36.1
Sp2g15500 Schrenkiella parvula HOM05D002540 ORTHO05D002672 1.7e-06 56.6 65 46.2
Aqoxy5G03701 Aquilegia oxysepala HOM05D002540 ORTHO05D002672 2.2e-06 56.2 60 41.7
Ciclev10032017m.g Citrus clementina HOM05D002540 ORTHO05D002672 2.2e-06 56.2 84 35.7
Lj6C814G17 Lonicera japonica HOM05D000273 ORTHO05D000198 2.2e-06 56.2 120 32.5
Gorai.005G176200 Gossypium raimondii HOM05D002540 ORTHO05D002672 2.9e-06 55.8 69 39.1
Actinidia37448 Actinidia chinensis HOM05D002540 ORTHO05D002672 3.8e-06 55.5 59 42.4
Gohir.D02G156900 Gossypium hirsutum HOM05D002540 ORTHO05D002672 3.8e-06 55.5 70 41.4
MSTRG.7020 Avicennia marina HOM05D002540 ORTHO05D002672 5.0e-06 55.1 80 35.0
A06p42070 Brassica napus HOM05D002540 ORTHO05D002672 5.0e-06 55.1 98 36.7
BolC7t44065H Brassica oleracea HOM05D002540 ORTHO05D002672 5.0e-06 55.1 98 36.7
BraA06t27124Z Brassica rapa HOM05D002540 ORTHO05D002672 5.0e-06 55.1 98 36.7
CSS0045039 Camellia sinensis var. sinensis HOM05D002540 ORTHO05D002672 5.0e-06 55.1 59 42.4
Nn4g22560 Nelumbo nucifera HOM05D002540 ORTHO05D002672 5.0e-06 55.1 84 36.9
Phvul.002G258800 Phaseolus vulgaris HOM05D002540 ORTHO05D002672 5.0e-06 55.1 101 36.6
SalBow2G1908 Salvia bowleyana HOM05D002540 ORTHO05D002672 5.0e-06 55.1 58 43.1
Cc11_g16000 Coffea canephora HOM05D002540 ORTHO05D002672 6.5e-06 54.7 85 38.8
VMungo0251G3089 Vigna mungo HOM05D002540 ORTHO05D002672 6.5e-06 54.7 90 35.6
C07p35410 Brassica napus HOM05D002540 ORTHO05D002672 8.5e-06 54.3 98 35.7
AUR62005507 Chenopodium quinoa HOM05D002540 ORTHO05D002672 8.5e-06 54.3 83 38.6
Migut.K00623 Erythranthe guttata HOM05D002540 ORTHO05D002672 8.5e-06 54.3 58 39.7
Eucgr.H02472 Eucalyptus grandis HOM05D002540 ORTHO05D002672 8.5e-06 54.3 66 39.4
MD13G1103200 Malus domestica HOM05D002540 ORTHO05D002672 8.5e-06 54.3 58 43.1
TWI18G0592 Tripterygium wilfordii HOM05D002540 ORTHO05D002672 8.5e-06 54.3 97 34.0


User provided reference genes

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