Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 8.1e-114 413.7 199 100.0
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 6.7e-84 314.3 163 94.5
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.1e-67 260.4 163 77.9
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 9.7e-67 257.3 163 77.3
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 5.3e-65 251.5 156 76.9
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 2.0e-64 249.6 164 72.6
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 4.5e-64 248.4 161 73.3
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.0e-63 247.3 163 74.2
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.3e-63 246.9 164 73.2
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.3e-63 246.9 164 73.2
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.3e-63 246.9 158 75.9
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.7e-63 246.5 153 77.1
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.7e-63 246.5 164 72.0
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.2e-63 246.1 163 70.6
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 2.2e-63 246.1 163 74.2
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 2.2e-63 246.1 160 73.8
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 5.0e-63 245.0 165 71.5
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 6.5e-63 244.6 163 73.0
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 6.5e-63 244.6 153 75.2
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.4e-62 243.4 164 71.3
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.5e-62 242.7 153 75.8
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 2.5e-62 242.7 164 70.7
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 3.2e-62 242.3 164 70.1
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 3.2e-62 242.3 159 72.3
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 4.2e-62 241.9 160 72.5
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 5.5e-62 241.5 156 72.4
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 5.5e-62 241.5 156 72.4
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.5e-62 241.5 156 72.4
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 9.4e-62 240.7 158 72.8
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.2e-61 240.4 156 72.4
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.2e-61 240.4 156 73.1
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.2e-61 240.4 161 72.7
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 1.6e-61 240.0 163 70.6
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.6e-61 240.0 154 72.7
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.7e-61 239.2 156 74.4
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.7e-61 239.2 156 70.5
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 2.7e-61 239.2 162 71.0
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 2.7e-61 239.2 158 70.9
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 3.6e-61 238.8 162 70.4
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 3.6e-61 238.8 161 71.4
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.6e-61 238.8 163 69.3
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 3.6e-61 238.8 156 72.4
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 4.6e-61 238.4 156 73.1
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 7.9e-61 237.7 159 71.1
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 7.9e-61 237.7 164 68.9
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 7.9e-61 237.7 164 68.3
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.0e-60 237.3 163 69.3
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.0e-60 237.3 156 72.4
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.0e-60 237.3 161 70.8
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.0e-60 237.3 164 70.1
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.4e-60 236.9 161 70.8
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 1.8e-60 236.5 158 70.9
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.3e-60 236.1 156 71.2
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 2.3e-60 236.1 163 69.9
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 2.3e-60 236.1 157 73.2
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 3.0e-60 235.7 156 71.2
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 3.0e-60 235.7 165 70.3
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 3.9e-60 235.3 155 71.0
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 3.9e-60 235.3 163 69.3
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 5.1e-60 235.0 156 73.7
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 5.1e-60 235.0 151 73.5
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 6.7e-60 234.6 179 65.9
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.8e-60 234.2 158 70.9
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 8.8e-60 234.2 157 72.6
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.1e-59 233.8 163 68.1
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.1e-59 233.8 158 70.9
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.5e-59 233.4 156 71.8
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.5e-59 233.4 162 69.8
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 1.5e-59 233.4 164 68.9
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.5e-59 233.4 163 68.1
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 2.0e-59 233.0 164 68.9
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 2.0e-59 233.0 156 70.5
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 2.0e-59 233.0 156 69.9
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 2.0e-59 233.0 156 71.8
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.6e-59 232.6 160 73.1
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 3.3e-59 232.3 156 73.7
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 4.4e-59 231.9 156 71.8
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 4.4e-59 231.9 163 69.9
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 4.4e-59 231.9 164 67.7
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 5.7e-59 231.5 156 69.2
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.7e-59 231.5 158 69.6
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 7.4e-59 231.1 158 69.6
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 7.4e-59 231.1 156 69.2
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 9.7e-59 230.7 170 67.6
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 9.7e-59 230.7 159 69.2
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 1.3e-58 230.3 156 70.5
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 1.3e-58 230.3 156 70.5
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 1.3e-58 230.3 169 66.9
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.7e-58 229.9 163 66.9
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.7e-58 229.9 165 69.1
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.7e-58 229.9 159 71.7
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 2.8e-58 229.2 153 70.6
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 2.8e-58 229.2 166 66.9
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 8.2e-58 227.6 164 66.5
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-57 227.3 162 66.0
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.4e-57 226.9 152 71.1
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.8e-57 226.5 187 62.0
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.8e-57 226.5 162 66.7
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 2.4e-57 226.1 156 69.2
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 9.1e-57 224.2 159 68.6
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.5e-56 223.4 172 64.0
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.5e-56 223.4 158 64.6
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.4e-56 222.2 160 66.2
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 4.5e-56 221.9 179 62.0
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 4.5e-56 221.9 155 68.4
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 7.7e-56 221.1 182 61.5
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 7.7e-56 221.1 172 64.5
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 1.7e-55 219.9 156 67.9
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.5e-55 218.0 187 59.9
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 6.5e-55 218.0 156 65.4
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 6.5e-55 218.0 158 65.2
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.1e-54 217.2 154 69.5
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.1e-54 217.2 153 68.6
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.4e-54 216.9 156 62.8
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 5.7e-51 204.9 153 63.4
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 2.2e-50 203.0 152 59.2
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 2.2e-50 203.0 201 53.2
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 4.8e-50 201.8 156 58.3
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.2e-48 197.2 184 53.3
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 5.9e-48 194.9 151 59.6
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.2e-45 187.2 156 59.0
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.8e-44 183.3 163 58.3
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.3e-44 183.0 151 62.9
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 2.2e-42 176.4 125 71.2
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 3.5e-40 169.1 120 65.8
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.0e-39 167.5 152 55.3
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 2.7e-37 159.5 97 75.3
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.0e-36 157.5 209 44.5
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 1.3e-34 150.6 116 64.7
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.7e-34 150.2 118 55.9
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.8e-34 148.7 207 44.0
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.4e-33 146.4 184 47.3
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 4.1e-33 145.6 189 42.9
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 5.9e-32 141.7 95 68.4
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 1.0e-31 141.0 88 72.7
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-31 140.2 105 62.9
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 2.9e-31 139.4 91 70.3
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 5.5e-30 135.2 188 42.6
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 1.4e-28 130.6 152 45.4
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.2e-27 127.5 144 50.7
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.4e-27 125.6 101 60.4
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 5.7e-27 125.2 259 36.7
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 3.7e-26 122.5 177 40.1
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.8e-25 120.2 156 45.5
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.8e-23 112.5 191 36.6
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 1.5e-22 110.5 84 65.5
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.7e-19 98.6 57 78.9
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.2e-18 96.7 77 61.0
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.1e-17 94.4 74 60.8
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 3.2e-17 92.8 78 59.0
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 9.2e-17 91.3 68 63.2
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 8.6e-15 84.7 91 48.4
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 5.6e-14 82.0 59 67.8
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 9.5e-14 81.3 59 64.4
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-12 77.8 49 71.4
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.1e-12 77.8 59 64.4
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 2.3e-12 76.6 111 36.9
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 5.8e-11 72.0 90 43.3
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.6e-06 55.5 39 61.5
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 9.5e-06 54.7 36 69.4


User provided reference genes

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