Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.5e-56 222.6 110 100.0
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 9.8e-37 156.8 81 98.8
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.3e-33 146.4 82 87.8
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 4.9e-28 127.9 81 76.5
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 1.1e-27 126.7 81 76.5
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 2.8e-23 112.1 83 67.5
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 1.4e-22 109.8 75 69.3
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 2.4e-22 109.0 78 64.1
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 4.0e-22 108.2 79 64.6
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 1.2e-21 106.7 97 56.7
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 1.5e-21 106.3 82 61.0
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 1.5e-21 106.3 79 60.8
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 1.5e-21 106.3 78 62.8
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 3.4e-21 105.1 78 61.5
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 3.4e-21 105.1 78 61.5
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 3.4e-21 105.1 79 63.3
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 3.4e-21 105.1 78 62.8
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 4.4e-21 104.8 78 62.8
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 4.4e-21 104.8 78 62.8
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 5.8e-21 104.4 79 62.0
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 5.8e-21 104.4 78 64.1
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 9.9e-21 103.6 103 55.3
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 1.7e-20 102.8 80 62.5
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 1.7e-20 102.8 73 68.5
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 2.2e-20 102.4 82 61.0
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.2e-20 102.4 82 61.0
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 3.8e-20 101.7 79 62.0
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 3.8e-20 101.7 80 60.0
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 6.4e-20 100.9 82 58.5
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 8.4e-20 100.5 78 64.1
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 8.4e-20 100.5 81 65.4
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 1.1e-19 100.1 78 62.8
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 1.1e-19 100.1 78 62.8
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 1.4e-19 99.8 101 51.5
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 1.4e-19 99.8 78 60.3
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 1.9e-19 99.4 82 64.6
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 1.9e-19 99.4 49 87.8
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 2.4e-19 99.0 104 54.8
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.4e-19 99.0 82 58.5
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 3.2e-19 98.6 79 60.8
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 3.2e-19 98.6 99 51.5
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 4.1e-19 98.2 101 55.4
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 4.1e-19 98.2 80 62.5
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 5.4e-19 97.8 79 55.7
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 5.4e-19 97.8 99 49.5
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 7.1e-19 97.4 82 59.8
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 7.1e-19 97.4 81 58.0
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 7.1e-19 97.4 102 52.9
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 7.1e-19 97.4 102 52.9
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 7.1e-19 97.4 78 61.5
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 7.1e-19 97.4 81 60.5
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 7.1e-19 97.4 82 59.8
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 1.2e-18 96.7 80 58.8
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 1.2e-18 96.7 81 60.5
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 1.2e-18 96.7 101 52.5
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 1.6e-18 96.3 80 58.8
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 1.6e-18 96.3 78 59.0
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 2.1e-18 95.9 75 57.3
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 2.1e-18 95.9 77 59.7
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 2.7e-18 95.5 104 52.9
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 2.7e-18 95.5 81 58.0
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 3.5e-18 95.1 104 51.9
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 3.5e-18 95.1 72 58.3
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 3.5e-18 95.1 60 68.3
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 7.8e-18 94.0 103 43.7
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 7.8e-18 94.0 81 59.3
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 7.8e-18 94.0 81 59.3
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 7.8e-18 94.0 102 52.0
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 7.8e-18 94.0 86 58.1
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 1.0e-17 93.6 79 60.8
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 1.0e-17 93.6 79 62.0
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 1.0e-17 93.6 75 58.7
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 1.7e-17 92.8 104 48.1
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 1.7e-17 92.8 104 49.0
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 1.7e-17 92.8 91 53.8
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 1.7e-17 92.8 91 53.8
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 2.3e-17 92.4 75 56.0
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 2.3e-17 92.4 98 50.0
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 3.0e-17 92.0 71 59.2
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 3.0e-17 92.0 81 59.3
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 3.0e-17 92.0 82 57.3
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 3.0e-17 92.0 101 48.5
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 3.9e-17 91.7 85 49.4
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 3.9e-17 91.7 63 63.5
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 3.9e-17 91.7 77 57.1
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 3.9e-17 91.7 91 52.7
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 5.1e-17 91.3 78 59.0
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 8.7e-17 90.5 107 46.7
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.1e-16 90.1 103 48.5
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 1.1e-16 90.1 50 82.0
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 1.5e-16 89.7 104 49.0
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 1.5e-16 89.7 83 60.2
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 1.5e-16 89.7 97 51.5
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 2.5e-16 89.0 97 48.5
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 3.3e-16 88.6 102 48.0
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 4.3e-16 88.2 81 56.8
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 9.6e-16 87.0 80 56.2
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 1.2e-15 86.7 77 59.7
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 2.1e-15 85.9 52 71.2
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 2.1e-15 85.9 78 50.0
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 2.8e-15 85.5 98 46.9
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 4.7e-15 84.7 80 52.5
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 8.1e-15 84.0 85 50.6
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.4e-14 82.4 58 62.1
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 3.1e-14 82.0 77 51.9
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 3.1e-14 82.0 101 44.6
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 4.0e-14 81.6 101 43.6
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 4.0e-14 81.6 101 43.6
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 9.0e-14 80.5 81 53.1
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 1.2e-13 80.1 82 52.4
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 7.6e-13 77.4 76 53.9
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 1.3e-12 76.6 99 44.4
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 3.8e-12 75.1 78 51.3
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 1.1e-11 73.6 90 42.2
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 1.4e-11 73.2 48 62.5
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 2.4e-11 72.4 45 73.3
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 3.2e-11 72.0 100 38.0
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 1.6e-10 69.7 41 73.2
HanXRQChr06g0182851 Helianthus annuus HOM05D005333 ORTHO05D005776 4.6e-10 68.2 75 42.7
AL5G13030 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 7.8e-10 67.4 55 61.8
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 1.0e-09 67.0 44 56.8
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 1.0e-09 67.0 43 65.1
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 6.6e-09 64.3 41 73.2
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 1.1e-08 63.5 66 50.0
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 5.6e-08 61.2 67 46.3
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 5.6e-08 61.2 67 46.3
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.6e-07 59.7 38 63.2
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 1.6e-07 59.7 38 63.2
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 2.1e-07 59.3 39 61.5
Gorai.009G350300 Gossypium raimondii HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 60.5
Solyc12g035850.1 Solanum lycopersicum HOM05D000216 ORTHO05D004083 8.1e-07 57.4 38 63.2
ATR0618G145 Amborella trichopoda HOM05D005333 ORTHO05D005776 1.1e-06 57.0 49 51.0
COL.COLO4_00391 Corchorus olitorius HOM05D006856 ORTHO05D008513 1.8e-06 56.2 38 60.5
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 2.4e-06 55.8 93 34.4
Medtr4g034810 Medicago truncatula HOM05D002824 ORTHO05D007162 5.3e-06 54.7 36 63.9
Gohir.A09G245566 Gossypium hirsutum HOM05D019283 ORTHO05D005776 6.9e-06 54.3 38 57.9


User provided reference genes

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