Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 4.4e-218 761.1 429 100.0
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.7e-100 370.5 448 55.1
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.7e-97 360.5 453 53.0
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 5.1e-97 359.0 448 54.0
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 9.6e-96 354.8 435 51.5
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 2.8e-95 353.2 483 51.8
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 3.6e-95 352.8 446 51.8
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 3.4e-93 346.3 461 54.7
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.5e-93 345.9 335 59.4
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 5.8e-93 345.5 381 54.3
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 2.2e-92 343.6 375 54.1
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.9e-92 343.2 436 54.8
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 8.4e-92 341.7 445 54.2
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 8.4e-92 341.7 437 55.1
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 9.3e-91 338.2 455 52.1
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 7.9e-90 335.1 448 51.6
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 3.0e-89 333.2 440 51.4
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 3.9e-89 332.8 443 49.4
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 1.5e-88 330.9 459 51.4
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 1.5e-88 330.9 441 53.1
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 3.3e-88 329.7 465 49.9
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 7.4e-88 328.6 429 52.0
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.3e-87 327.8 442 52.0
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.6e-87 327.4 451 51.7
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 6.2e-87 325.5 453 49.4
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 6.2e-87 325.5 334 56.3
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.8e-86 323.9 441 49.4
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 4.0e-86 322.8 361 54.3
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 1.2e-85 321.2 462 47.4
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 1.7e-84 317.4 462 47.4
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 3.8e-84 316.2 332 55.1
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.1e-83 314.7 382 50.8
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 2.5e-83 313.5 387 50.4
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 2.5e-83 313.5 333 56.5
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.6e-82 310.8 463 49.2
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.6e-82 310.8 322 55.3
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 3.5e-82 309.7 331 56.5
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 4.6e-82 309.3 441 47.6
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 2.3e-81 307.0 471 44.2
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 3.9e-81 306.2 469 49.3
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 5.1e-81 305.8 440 46.8
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 8.7e-81 305.1 339 52.8
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.9e-80 303.9 438 47.0
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 4.3e-80 302.8 334 54.8
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 3.7e-79 299.7 366 51.9
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 8.2e-79 298.5 464 45.5
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.1e-78 298.1 441 46.7
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 1.8e-78 297.4 284 58.1
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 5.3e-78 295.8 461 42.3
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 5.3e-78 295.8 383 48.3
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 6.9e-78 295.4 519 43.7
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 9.0e-78 295.0 436 50.2
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 9.0e-78 295.0 364 51.1
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 1.5e-77 294.3 426 46.9
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 1.5e-77 294.3 450 43.3
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.3e-76 291.2 355 50.1
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 2.9e-76 290.0 325 54.2
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 2.9e-76 290.0 345 52.2
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 6.5e-76 288.9 343 49.3
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 6.5e-76 288.9 440 49.8
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 1.4e-75 287.7 453 43.5
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 3.2e-75 286.6 345 49.6
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 3.2e-75 286.6 480 43.3
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 5.5e-75 285.8 448 49.3
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.2e-74 284.6 311 52.1
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 2.1e-74 283.9 386 49.0
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 2.7e-74 283.5 425 48.7
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 3.0e-73 280.0 465 42.4
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 5.1e-73 279.3 323 51.7
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 6.7e-73 278.9 493 39.8
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.5e-72 276.9 356 50.0
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 4.3e-72 276.2 314 51.6
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 4.3e-72 276.2 458 45.0
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.1e-70 271.6 354 48.9
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 5.3e-70 269.2 375 45.9
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 2.0e-69 267.3 382 46.6
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 5.9e-69 265.8 441 45.4
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 5.9e-69 265.8 375 45.9
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 7.7e-69 265.4 483 41.0
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.0e-68 265.0 450 45.3
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.7e-68 264.2 441 45.1
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.7e-68 264.2 441 44.4
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.5e-67 259.2 435 44.6
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.1e-66 257.3 341 48.4
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 2.7e-66 256.9 237 57.4
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 6.1e-66 255.8 237 57.8
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 1.8e-65 254.2 241 58.1
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 2.3e-65 253.8 306 47.7
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.3e-64 250.0 325 48.3
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 4.3e-64 249.6 221 63.3
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 9.7e-64 248.4 274 50.7
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.3e-63 248.1 508 35.8
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 2.8e-63 246.9 282 51.4
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 1.1e-62 245.0 237 55.7
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 4.1e-62 243.0 286 50.3
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 5.3e-62 242.7 273 51.3
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 9.1e-62 241.9 230 56.1
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 1.5e-61 241.1 234 56.8
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 2.6e-61 240.4 235 57.0
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 2.6e-61 240.4 235 57.0
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 3.4e-61 240.0 322 48.8
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 2.2e-60 237.3 447 40.7
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 2.9e-60 236.9 257 51.8
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 6.5e-60 235.7 338 51.2
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 8.5e-60 235.3 279 50.2
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 1.4e-59 234.6 418 43.3
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 1.9e-59 234.2 251 53.4
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 3.2e-59 233.4 190 64.7
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 7.2e-59 232.3 139 92.1
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 9.4e-59 231.9 251 53.8
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.7e-58 229.6 291 49.1
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 2.0e-56 224.2 427 41.9
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.8e-54 217.6 353 43.1
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.1e-51 208.4 337 42.4
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.7e-50 203.8 312 43.6
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 6.3e-47 192.6 298 46.6
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 8.2e-47 192.2 295 43.1
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.4e-46 191.4 317 41.3
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 9.1e-46 188.7 251 45.4
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 2.0e-45 187.6 231 50.6
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.5e-45 186.8 313 40.9
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.5e-40 171.4 372 36.3
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 4.4e-40 169.9 368 34.8
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 7.5e-40 169.1 294 40.1
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 1.6e-37 161.4 214 44.9
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 1.2e-34 151.8 190 49.5
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 4.7e-34 149.8 191 46.1
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 2.3e-33 147.5 433 31.2
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.5e-32 144.8 225 40.9
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 4.4e-32 143.3 103 70.9
CDE10G1123 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 8.3e-31 139.0 77 89.6
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 3.1e-30 137.1 136 60.3
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 2.9e-28 130.6 215 41.9
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 2.9e-28 130.6 153 52.3
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 3.3e-27 127.1 216 41.2
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 2.1e-26 124.4 159 42.8
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 6.1e-26 122.9 71 77.5
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.3e-25 120.9 71 76.1
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 6.8e-25 119.4 96 64.6
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.2e-24 118.6 96 62.5
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.0e-24 117.9 69 75.4
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 7.5e-24 115.9 70 77.1
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 2.9e-23 114.0 182 35.7
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 4.1e-22 110.2 190 43.2
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 9.2e-22 109.0 232 34.9
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 7.8e-21 105.9 88 56.8
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 1.2e-18 98.6 115 45.2
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 7.5e-16 89.4 252 32.9
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.5e-13 80.5 259 30.5
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 7.8e-13 79.3 99 39.4
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.9e-12 77.0 246 30.5
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 3.9e-12 77.0 174 32.2
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.0e-12 76.6 246 30.5
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.0e-12 76.6 246 30.5
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 7.3e-11 72.8 262 28.6
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 3.6e-10 70.5 89 49.4
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.5e-08 65.1 237 29.1
Cre01.g021750 Chlamydomonas reinhardtii HOM05D004030 ORTHO05D004952 1.1e-06 58.9 117 34.2
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-06 58.2 114 36.0
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.2e-06 57.4 74 43.2


User provided reference genes

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