Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 2159.4 1076 100.0
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1711.0 1086 79.7
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1691.0 1081 78.3
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1689.5 1084 77.9
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1687.9 1084 77.9
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1687.5 1084 77.9
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1676.0 1094 76.8
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1674.8 1103 76.7
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1674.1 1094 76.5
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1670.2 1090 76.4
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1665.2 1087 76.7
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1665.2 1110 75.3
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1086 76.7
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1661.4 1090 75.9
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1659.0 1098 75.8
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1657.9 1085 76.9
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1656.0 1079 76.1
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1654.8 1081 77.0
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1654.8 1086 75.9
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1654.4 1087 77.0
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1654.0 1096 76.4
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1650.2 1085 76.2
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1024 79.0
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1645.6 1089 75.8
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1645.2 1085 76.0
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1644.0 1087 75.3
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1643.6 1086 76.0
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1643.2 1091 75.7
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1087 75.7
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1085 75.5
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1639.8 1024 78.8
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1639.0 1088 75.3
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1636.7 1094 74.7
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1635.9 1088 74.5
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1635.5 1087 75.3
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1635.5 1089 74.8
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1630.9 1084 75.2
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1629.0 1078 75.3
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1627.1 1082 75.2
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1626.7 1086 74.9
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1626.3 1080 74.6
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1625.5 984 79.6
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1625.1 1081 75.5
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1620.9 1004 79.4
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1620.5 1084 75.3
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1084 75.2
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1084 75.3
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1617.1 1088 74.6
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1615.1 1081 74.7
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1615.1 1094 74.5
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1613.6 1085 74.8
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 1017 78.1
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1611.3 1020 78.1
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1610.1 1043 76.6
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1607.0 1117 72.6
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 1083 75.1
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1600.9 1128 71.9
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1598.9 1088 73.8
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1598.6 1083 74.0
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 1089 74.6
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1595.5 982 77.9
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1593.2 1112 72.8
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1592.4 1085 74.5
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1588.9 1075 72.7
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1588.2 1082 73.7
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1587.4 1075 72.6
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1584.3 1029 75.3
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1583.9 982 77.2
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1583.5 1004 77.1
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1581.2 1182 68.7
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1580.8 1007 75.8
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1580.1 1004 75.9
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1579.7 1042 74.6
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1578.1 1007 75.9
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1578.1 987 76.9
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1577.4 988 76.7
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1577.4 1074 73.1
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1575.5 1079 72.8
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1574.7 1008 75.6
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1573.9 987 76.5
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1573.1 1007 75.2
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1571.6 1075 72.0
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1571.6 1077 72.5
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1571.2 1008 75.5
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1570.4 999 76.1
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1570.1 1072 72.6
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1568.9 1083 73.9
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1568.5 1023 75.0
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1565.4 1079 71.8
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1565.1 1079 72.3
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1563.5 1079 72.0
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1562.7 1022 74.5
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1562.0 1008 75.6
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1561.6 1079 72.0
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1560.8 1118 70.9
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1560.4 1079 72.0
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1556.2 1077 73.4
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1549.6 1074 72.6
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1543.9 1073 71.5
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1542.7 1113 70.1
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1540.4 1072 71.0
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1534.6 1014 73.8
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1533.9 1199 67.0
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1525.0 1170 68.2
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1489.2 1012 72.6
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1483.8 969 74.9
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1469.9 1115 68.1
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1447.2 1015 69.2
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1443.7 1086 69.3
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1438.3 914 76.9
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1433.3 869 81.0
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1423.3 1009 71.0
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1407.5 1010 67.6
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1342.0 958 68.0
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1318.5 1104 63.9
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1316.6 1104 63.9
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1281.5 801 78.4
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1272.7 1058 61.6
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1200.3 846 72.3
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1172.9 1078 57.3
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1132.1 747 75.4
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1130.9 750 75.3
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1116.3 1000 56.1
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1114.0 981 55.0
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1103.6 722 74.2
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1086.6 989 55.2
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 9.5e-294 1013.8 738 68.8
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 3.8e-274 948.7 881 56.2
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.1e-273 947.2 885 58.8
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.5e-259 900.2 777 58.3
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 3.9e-255 885.6 579 73.6
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.2e-251 874.0 596 73.7
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.7e-234 817.0 970 44.5
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 7.0e-212 741.9 671 56.2
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.9e-197 693.3 646 57.0
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 3.7e-197 693.0 732 51.6
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.9e-197 692.6 447 78.1
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.7e-176 622.9 529 63.3
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.3e-173 614.8 414 74.4
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 3.3e-169 600.1 420 71.9
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 6.0e-163 579.3 506 62.6
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 3.4e-158 563.5 347 80.4
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 2.5e-153 547.4 407 67.1
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.7e-149 534.6 478 61.9
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.2e-147 528.5 393 64.4
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 9.1e-127 459.1 397 60.2
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.9e-125 454.1 309 73.1
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.8e-125 453.8 326 68.7
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 6.7e-122 443.0 410 60.0
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.1e-108 399.1 968 30.3
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.6e-107 395.2 957 29.3
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 9.4e-100 369.4 959 28.3
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 8.0e-99 366.3 282 67.0
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 1.9e-92 345.1 226 75.2
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.4e-87 328.9 896 28.8
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.8e-81 307.0 154 90.3
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 6.2e-59 233.8 866 24.5
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-54 219.5 222 52.3
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 2.5e-52 211.8 332 36.7
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 4.8e-51 207.6 312 42.9
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 5.6e-44 184.1 124 76.6
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.3e-43 183.0 192 53.6
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 4.0e-42 177.9 220 48.6
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-41 176.4 152 58.6
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.9e-40 171.8 151 57.0
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 1.2e-38 166.4 272 37.1
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 6.2e-35 154.1 461 26.7
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.1e-34 153.3 149 54.4
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 6.5e-32 144.1 125 62.4
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 7.1e-31 140.6 156 42.3
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 4.5e-25 121.3 422 24.6
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 2.5e-23 115.5 156 52.6
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.8e-21 109.4 105 52.4
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 5.7e-20 104.4 280 25.4
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 2.2e-19 102.4 74 62.2
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.3e-13 82.4 83 53.0
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.5e-12 79.0 58 65.5
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 7.4e-12 77.4 56 62.5
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 2.0e-09 69.3 45 73.3
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-07 63.5 79 46.8
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.1e-07 63.5 48 60.4
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 5.5e-07 61.2 91 41.8
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 4.7e-06 58.2 36 72.2


User provided reference genes

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