Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.4e-232 809.3 422 100.0
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 3.8e-198 694.9 389 92.8
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 4.2e-144 515.4 394 69.5
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 6.7e-142 508.1 395 68.1
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 1.9e-141 506.5 393 67.7
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 9.6e-141 504.2 387 69.3
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.3e-140 503.8 388 69.3
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 2.1e-140 503.1 394 69.5
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 1.4e-139 500.4 389 68.1
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 3.1e-139 499.2 394 66.5
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 4.0e-139 498.8 393 66.9
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 5.3e-139 498.4 387 69.0
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 6.9e-139 498.0 394 66.8
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 1.5e-138 496.9 394 66.0
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 3.4e-138 495.7 394 66.8
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 4.5e-138 495.4 394 67.8
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 4.5e-138 495.4 394 66.5
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 5.8e-138 495.0 394 67.0
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 7.6e-138 494.6 394 66.5
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 7.6e-138 494.6 394 66.2
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 7.6e-138 494.6 394 67.0
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 1.7e-137 493.4 392 66.1
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 2.2e-137 493.0 394 65.7
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 2.9e-137 492.7 394 66.0
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 2.9e-137 492.7 395 67.1
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 3.8e-137 492.3 394 65.7
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 8.4e-137 491.1 395 66.8
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 1.1e-136 490.7 394 66.5
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 1.1e-136 490.7 394 65.2
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 1.9e-136 490.0 394 66.2
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 1.9e-136 490.0 394 66.0
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 4.2e-136 488.8 394 66.2
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 4.2e-136 488.8 394 65.5
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 4.2e-136 488.8 394 64.5
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 3.5e-135 485.7 394 65.7
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 3.5e-135 485.7 392 65.6
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 3.5e-135 485.7 392 65.6
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 4.6e-135 485.3 394 65.7
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 4.6e-135 485.3 394 65.5
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 7.9e-135 484.6 394 65.5
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 1.0e-134 484.2 394 65.0
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 1.0e-134 484.2 394 65.2
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 1.8e-134 483.4 387 65.9
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 2.3e-134 483.0 389 65.6
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 1.5e-133 480.3 406 64.0
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 2.5e-133 479.6 392 64.5
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 3.3e-133 479.2 393 62.8
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 5.7e-133 478.4 394 65.5
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 7.4e-133 478.0 426 61.5
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.6e-132 476.9 394 65.2
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 2.8e-132 476.1 393 62.3
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 2.8e-132 476.1 394 64.7
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.8e-132 476.1 396 65.4
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 6.3e-132 474.9 394 64.2
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 1.4e-131 473.8 393 62.3
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 6.9e-131 471.5 396 64.9
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 3.4e-130 469.2 394 64.2
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 5.9e-130 468.4 395 63.5
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 2.9e-129 466.1 419 60.9
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 3.2e-128 462.6 394 62.9
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 2.1e-127 459.9 413 62.5
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 3.6e-127 459.1 394 63.5
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 1.4e-126 457.2 387 62.3
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 3.9e-126 455.7 394 63.7
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 3.9e-126 455.7 394 63.7
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 5.1e-126 455.3 394 61.4
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 6.7e-126 454.9 466 56.0
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 2.2e-121 439.9 396 60.6
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 8.5e-121 438.0 419 58.9
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 2.5e-120 436.4 428 57.0
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 1.0e-118 431.0 387 59.2
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 3.0e-118 429.5 407 57.5
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 5.1e-118 428.7 407 57.5
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 5.1e-118 428.7 415 57.6
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 6.7e-118 428.3 387 58.9
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 1.1e-117 427.6 387 57.9
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 1.5e-117 427.2 402 58.5
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 1.5e-117 427.2 402 58.5
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 2.0e-117 426.8 394 60.9
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 4.4e-117 425.6 419 57.5
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 9.7e-117 424.5 387 58.1
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 2.8e-116 422.9 387 58.4
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 1.1e-115 421.0 393 57.5
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 1.4e-115 420.6 388 59.0
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 1.8e-115 420.2 404 59.2
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 7.7e-114 414.8 391 57.5
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 1.0e-113 414.5 392 56.9
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.7e-113 413.7 402 58.7
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 9.4e-112 407.9 387 59.7
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 2.1e-111 406.8 387 56.6
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 2.1e-111 406.8 407 55.8
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 3.6e-111 406.0 407 55.5
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 1.4e-110 404.1 392 56.1
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 2.3e-110 403.3 421 53.4
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 3.0e-110 402.9 421 53.4
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 3.9e-110 402.5 387 56.3
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 6.7e-110 401.7 318 66.0
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 7.4e-109 398.3 406 53.7
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 1.7e-108 397.1 408 54.7
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 8.2e-108 394.8 463 51.8
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 1.1e-107 394.4 408 54.4
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 2.4e-107 393.3 392 55.9
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 1.2e-103 380.9 389 56.3
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 1.4e-102 377.5 387 54.8
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 6.7e-102 375.2 369 57.7
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 5.7e-101 372.1 439 51.5
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.2e-98 364.4 351 56.7
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 5.0e-97 359.0 380 54.7
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 8.5e-97 358.2 406 51.2
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 2.1e-95 353.6 397 52.1
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 2.0e-93 347.1 356 56.2
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 4.8e-92 342.4 382 53.7
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 8.3e-92 341.7 365 56.2
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 4.1e-91 339.3 426 48.6
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 5.7e-85 318.9 406 46.8
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.9e-80 303.9 403 44.4
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 5.8e-77 292.4 398 47.2
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 7.8e-74 282.0 392 42.6
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 2.3e-73 280.4 369 47.4
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 5.6e-72 275.8 203 66.5
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 9.5e-64 248.4 278 52.5
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 5.2e-62 242.7 385 41.0
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.9e-56 224.2 201 57.2
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 4.9e-52 209.5 137 73.0
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 5.6e-48 196.1 197 59.9
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.2e-47 194.9 197 58.4
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.6e-47 194.5 197 57.9
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 6.4e-44 182.6 194 53.6
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 1.4e-43 181.4 203 53.2
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.5e-42 176.8 109 78.0
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 7.8e-42 175.6 212 50.9
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 3.0e-41 173.7 434 31.1
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.9e-27 127.9 104 61.5
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 2.6e-21 107.5 165 43.6
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 1.1e-19 102.1 103 53.4
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.6e-15 88.2 85 54.1
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 2.5e-11 74.3 81 45.7
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 1.3e-07 62.0 52 63.5
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.3e-07 62.0 65 47.7


User provided reference genes

Program Settings