Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 4.7e-63 244.6 144 100.0
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 5.9e-58 227.6 137 99.3
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.9e-58 227.6 137 99.3
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.9e-58 227.6 137 99.3
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.9e-58 227.6 137 99.3
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 7.8e-58 227.3 137 98.5
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.8e-58 227.3 137 98.5
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 7.8e-58 227.3 137 98.5
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.8e-58 227.3 137 98.5
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 7.8e-58 227.3 137 98.5
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 7.8e-58 227.3 137 98.5
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 7.8e-58 227.3 137 98.5
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 1.3e-57 226.5 137 97.8
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 1.7e-57 226.1 137 97.8
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 2.3e-57 225.7 136 99.3
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 2.3e-57 225.7 137 97.8
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 2.3e-57 225.7 137 97.8
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 2.9e-57 225.3 137 97.8
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 2.9e-57 225.3 137 97.8
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 3.8e-57 224.9 137 97.1
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 3.8e-57 224.9 137 97.8
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 3.8e-57 224.9 137 97.8
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 3.8e-57 224.9 137 97.1
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 3.8e-57 224.9 137 97.1
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 3.8e-57 224.9 137 97.8
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 3.8e-57 224.9 137 97.1
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 3.8e-57 224.9 141 97.2
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 3.8e-57 224.9 137 97.8
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 5.0e-57 224.6 137 97.8
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 5.0e-57 224.6 137 97.1
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 5.0e-57 224.6 137 97.1
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 5.0e-57 224.6 137 97.1
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 5.0e-57 224.6 137 97.8
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 5.0e-57 224.6 137 97.8
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 5.0e-57 224.6 137 97.1
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.0e-57 224.6 137 97.8
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.0e-57 224.6 137 97.8
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 5.0e-57 224.6 137 97.8
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 6.6e-57 224.2 136 97.8
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 6.6e-57 224.2 136 97.8
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 6.6e-57 224.2 136 97.8
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 6.6e-57 224.2 137 97.1
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 6.6e-57 224.2 136 97.8
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 6.6e-57 224.2 136 97.8
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 6.6e-57 224.2 137 97.1
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 6.6e-57 224.2 136 97.8
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 6.6e-57 224.2 136 97.8
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 6.6e-57 224.2 136 97.8
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 8.6e-57 223.8 137 97.1
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 8.6e-57 223.8 136 97.8
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 8.6e-57 223.8 137 96.4
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 8.6e-57 223.8 137 97.1
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 8.6e-57 223.8 137 97.1
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 8.6e-57 223.8 137 97.1
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.1e-56 223.4 137 97.1
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 1.1e-56 223.4 137 97.1
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.5e-56 223.0 137 96.4
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.5e-56 223.0 137 97.1
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.5e-56 223.0 137 97.1
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 1.5e-56 223.0 137 97.1
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 1.5e-56 223.0 137 97.1
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 1.5e-56 223.0 137 97.1
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.5e-56 223.0 137 97.1
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 1.5e-56 223.0 137 97.1
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 1.9e-56 222.6 136 97.8
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 1.9e-56 222.6 137 97.1
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 1.9e-56 222.6 137 97.1
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 1.9e-56 222.6 136 97.8
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 1.9e-56 222.6 136 97.8
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 1.9e-56 222.6 136 97.8
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 1.9e-56 222.6 136 97.8
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.5e-56 222.2 136 97.8
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.5e-56 222.2 136 97.8
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 2.5e-56 222.2 136 97.8
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 2.5e-56 222.2 136 97.8
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 2.5e-56 222.2 137 96.4
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 2.5e-56 222.2 137 97.1
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.5e-56 222.2 136 97.8
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 2.5e-56 222.2 137 97.1
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 3.3e-56 221.9 137 95.6
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 3.3e-56 221.9 137 95.6
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 3.3e-56 221.9 136 97.8
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 4.3e-56 221.5 136 97.1
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 4.3e-56 221.5 136 97.1
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 4.3e-56 221.5 137 92.0
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 4.3e-56 221.5 136 97.1
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 5.6e-56 221.1 136 96.3
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 5.6e-56 221.1 136 97.1
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 5.6e-56 221.1 136 97.1
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 7.3e-56 220.7 137 96.4
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 7.3e-56 220.7 141 94.3
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 7.3e-56 220.7 137 96.4
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 9.5e-56 220.3 136 97.1
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 9.5e-56 220.3 134 98.5
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 9.5e-56 220.3 137 94.9
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 9.5e-56 220.3 137 94.9
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 9.5e-56 220.3 137 96.4
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 1.2e-55 219.9 137 95.6
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 2.1e-55 219.2 136 95.6
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 3.6e-55 218.4 136 96.3
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 3.6e-55 218.4 136 96.3
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 6.8e-54 214.2 140 92.9
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 2.4e-51 205.7 136 90.4
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.0e-49 200.3 139 89.2
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.3e-49 199.9 134 89.6
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.9e-48 196.1 192 57.3
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.6e-47 193.0 137 83.2
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 2.8e-47 192.2 126 93.7
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 3.6e-47 191.8 135 85.9
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 8.0e-47 190.7 137 73.7
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.4e-43 179.9 131 84.7
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 2.1e-42 176.0 136 79.4
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 1.0e-41 173.7 111 97.3
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.3e-41 173.3 110 98.2
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 3.0e-41 172.2 111 97.3
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 5.0e-41 171.4 113 94.7
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 5.4e-35 151.4 137 62.8
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.6e-34 148.3 152 56.6
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.0e-33 147.1 73 93.2
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 1.4e-27 126.7 60 95.0
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 5.1e-25 118.2 86 70.9
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 8.7e-25 117.5 109 58.7
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 1.1e-24 117.1 56 92.9
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 1.6e-23 113.2 52 98.1
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.4e-22 110.2 52 94.2
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 2.3e-17 92.8 78 64.1
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 1.6e-15 86.7 103 46.6
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 3.6e-15 85.5 41 97.6
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.8e-09 66.6 35 88.6
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 8.7e-09 64.3 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 9.6e-08 60.8 60 53.3


User provided reference genes

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