Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.0e-225 785.4 397 100.0
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 1.4e-186 656.4 388 84.8
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 1.7e-184 649.4 377 84.1
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.1e-183 646.7 368 86.7
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.5e-183 646.4 392 80.4
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 1.5e-183 646.4 391 80.8
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 5.6e-183 644.4 393 80.9
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 2.1e-182 642.5 392 82.4
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 3.6e-182 641.7 399 79.9
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 4.7e-182 641.3 387 81.7
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 1.1e-181 640.2 391 80.8
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.5e-180 636.3 390 82.6
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.6e-180 635.6 393 79.9
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 3.4e-180 635.2 394 80.7
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 3.4e-180 635.2 377 82.8
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 1.7e-179 632.9 390 80.5
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 3.8e-179 631.7 392 79.3
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.8e-179 631.7 393 79.4
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 3.8e-179 631.7 390 80.8
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 3.8e-179 631.7 393 80.2
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 6.4e-179 630.9 389 80.5
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 1.4e-178 629.8 392 79.1
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 1.9e-178 629.4 388 79.1
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 2.4e-178 629.0 391 79.3
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 1.2e-177 626.7 388 79.1
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.6e-177 626.3 388 79.6
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 2.7e-177 625.5 388 79.4
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 2.7e-177 625.5 389 79.7
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 3.5e-177 625.2 394 78.9
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 3.5e-177 625.2 389 80.2
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 4.6e-177 624.8 388 79.9
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.7e-176 622.9 393 78.1
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 3.9e-176 621.7 388 80.4
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 3.9e-176 621.7 392 78.3
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 6.6e-176 620.9 388 78.6
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 8.7e-176 620.5 390 81.0
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 8.7e-176 620.5 388 78.9
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 1.5e-175 619.8 389 77.4
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 1.5e-175 619.8 389 77.4
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 1.5e-175 619.8 388 78.6
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 3.3e-175 618.6 389 78.7
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 4.3e-175 618.2 388 78.4
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 9.6e-175 617.1 389 78.1
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 9.6e-175 617.1 389 78.4
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.6e-174 615.1 394 77.7
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 4.8e-174 614.8 388 78.6
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 6.2e-174 614.4 389 78.4
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 8.1e-174 614.0 387 79.6
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 1.4e-173 613.2 386 78.5
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 3.1e-173 612.1 364 81.3
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 4.0e-173 611.7 392 75.8
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.5e-172 609.8 389 77.1
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 2.0e-172 609.4 389 77.1
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 3.4e-172 608.6 392 75.3
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 3.4e-172 608.6 412 73.8
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 4.5e-172 608.2 390 77.7
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 5.8e-172 607.8 419 74.2
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 9.9e-172 607.1 390 76.2
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 1.3e-171 606.7 407 74.2
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.9e-171 604.7 320 95.6
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 8.4e-171 604.0 385 77.4
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 1.1e-170 603.6 393 77.4
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.9e-170 602.8 392 76.5
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 2.4e-170 602.4 389 76.1
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 2.4e-170 602.4 389 75.8
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.2e-170 602.1 394 76.9
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 3.2e-170 602.1 389 77.1
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 5.4e-170 601.3 394 75.4
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 7.1e-170 600.9 389 76.9
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 9.3e-170 600.5 388 76.3
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 7.9e-169 597.4 390 77.2
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 1.0e-168 597.0 391 76.0
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.8e-168 596.3 394 75.9
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.8e-168 596.3 377 77.7
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 2.3e-168 595.9 391 76.2
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 3.0e-168 595.5 391 75.7
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 3.0e-168 595.5 365 79.2
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 8.7e-168 594.0 391 75.7
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 1.1e-167 593.6 390 75.6
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 1.1e-167 593.6 391 75.4
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 1.1e-167 593.6 391 75.4
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 1.5e-167 593.2 390 75.1
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.5e-167 593.2 390 75.6
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 3.3e-167 592.0 390 74.9
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 5.6e-167 591.3 371 77.6
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 7.4e-167 590.9 391 75.4
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 7.4e-167 590.9 391 75.4
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 9.6e-167 590.5 388 75.8
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 1.6e-166 589.7 390 75.1
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 1.6e-166 589.7 396 74.2
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 2.1e-166 589.3 366 78.1
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 4.8e-166 588.2 390 74.6
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 4.8e-166 588.2 390 74.6
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 8.1e-166 587.4 386 74.4
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 8.1e-166 587.4 396 74.0
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.4e-165 586.6 390 74.9
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 1.4e-165 586.6 390 74.9
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.4e-165 586.6 446 69.7
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 1.8e-165 586.3 390 74.9
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 4.0e-165 585.1 391 74.2
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 1.2e-164 583.6 391 74.7
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 2.6e-164 582.4 385 75.6
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.7e-163 579.7 486 62.8
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.7e-163 579.7 360 79.7
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 2.9e-163 578.9 362 80.1
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 9.3e-162 573.9 395 73.7
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.5e-159 566.6 436 66.7
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.5e-159 566.6 369 73.2
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 7.4e-159 564.3 435 67.1
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 3.8e-155 552.0 542 56.3
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 1.1e-154 550.4 391 71.9
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 2.5e-154 549.3 410 67.6
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.4e-149 533.5 347 77.2
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 3.8e-139 498.8 310 78.4
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 5.3e-133 478.4 290 78.6
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 7.0e-133 478.0 301 77.4
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 5.9e-132 474.9 312 76.9
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 4.7e-121 438.7 385 58.4
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 1.5e-119 433.7 387 56.8
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 8.3e-118 427.9 365 55.9
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 4.1e-117 425.6 323 69.7
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 2.2e-115 419.9 259 80.7
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 8.3e-110 401.4 340 55.9
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 2.5e-98 363.2 349 51.9
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 4.9e-94 349.0 230 78.7
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 4.6e-84 315.8 289 50.9
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 4.9e-78 295.8 220 67.3
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.0e-75 288.1 346 43.9
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 1.4e-69 267.7 362 40.9
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 1.3e-62 244.6 228 61.4
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 3.2e-61 240.0 330 40.9
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 5.4e-61 239.2 218 62.8
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 1.6e-57 227.6 270 49.3
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.1e-56 224.9 138 79.7
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 7.9e-44 182.2 98 90.8
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 3.4e-39 166.8 83 97.6
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.4e-32 144.1 80 86.2
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.1e-32 143.3 82 85.4
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 6.5e-30 136.0 132 57.6
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 2.3e-19 100.9 105 49.5
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 2.3e-19 100.9 65 64.6
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 2.6e-18 97.4 76 63.2
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 3.3e-10 70.5 53 60.4
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 7.0e-08 62.8 34 85.3
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 4.5e-07 60.1 42 73.8
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 3.8e-06 57.0 37 67.6


User provided reference genes

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