Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.5e-46 188.0 97 100.0
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.5e-44 182.6 97 95.9
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.4e-39 166.0 97 84.5
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 1.9e-39 165.6 95 84.2
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 3.2e-39 164.9 97 83.5
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 4.2e-39 164.5 95 84.2
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 7.1e-39 163.7 95 85.3
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 7.1e-39 163.7 95 83.2
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 9.3e-39 163.3 95 86.3
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 9.3e-39 163.3 95 86.3
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 1.2e-38 162.9 95 83.2
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 1.2e-38 162.9 97 84.5
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.6e-38 162.5 95 84.2
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 1.6e-38 162.5 97 83.5
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 1.6e-38 162.5 95 83.2
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.6e-38 162.5 96 82.3
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 2.1e-38 162.2 95 84.2
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 2.7e-38 161.8 95 85.3
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 3.5e-38 161.4 95 83.2
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 3.5e-38 161.4 95 82.1
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 4.6e-38 161.0 95 82.1
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 4.6e-38 161.0 95 84.2
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 4.6e-38 161.0 97 81.4
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 7.8e-38 160.2 95 83.2
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 1.0e-37 159.8 95 82.1
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 1.0e-37 159.8 97 80.4
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.3e-37 159.5 97 80.4
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.3e-37 159.5 97 80.4
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.3e-37 159.5 97 80.4
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.3e-37 159.5 97 80.4
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 1.3e-37 159.5 95 81.1
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.3e-37 159.5 95 82.1
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.7e-37 159.1 97 82.5
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 1.7e-37 159.1 97 80.4
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.7e-37 159.1 97 80.4
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.7e-37 159.1 97 81.4
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 1.7e-37 159.1 94 81.9
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 1.7e-37 159.1 96 81.2
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.3e-37 158.7 95 81.1
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 2.3e-37 158.7 95 81.1
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 2.3e-37 158.7 94 80.9
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 3.0e-37 158.3 95 80.0
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 3.0e-37 158.3 94 80.9
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 3.0e-37 158.3 95 80.0
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 3.9e-37 157.9 94 80.9
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 3.9e-37 157.9 95 80.0
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 3.9e-37 157.9 95 80.0
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 3.9e-37 157.9 95 80.0
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 3.9e-37 157.9 95 81.1
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 5.1e-37 157.5 97 79.4
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 5.1e-37 157.5 97 79.4
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 5.1e-37 157.5 97 79.4
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 5.1e-37 157.5 97 79.4
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 5.1e-37 157.5 97 79.4
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 6.6e-37 157.1 96 80.2
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 8.7e-37 156.8 95 82.1
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 8.7e-37 156.8 97 79.4
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 8.7e-37 156.8 95 80.0
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 8.7e-37 156.8 94 80.9
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 8.7e-37 156.8 95 80.0
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.1e-36 156.4 95 80.0
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.1e-36 156.4 94 79.8
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-36 156.4 97 78.4
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-36 156.4 97 78.4
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 1.1e-36 156.4 97 78.4
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 1.1e-36 156.4 97 78.4
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.1e-36 156.4 95 81.1
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.5e-36 156.0 97 78.4
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.5e-36 156.0 94 79.8
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 1.5e-36 156.0 95 81.1
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 1.9e-36 155.6 95 80.0
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 1.9e-36 155.6 94 78.7
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 2.5e-36 155.2 94 78.7
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 2.5e-36 155.2 95 78.9
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 2.5e-36 155.2 95 78.9
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 2.5e-36 155.2 95 80.0
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 4.3e-36 154.5 95 81.1
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.3e-36 154.5 95 81.1
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.3e-36 154.5 95 81.1
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.3e-36 154.5 95 81.1
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.3e-36 154.5 95 81.1
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 4.3e-36 154.5 94 79.8
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 4.3e-36 154.5 97 76.3
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 5.6e-36 154.1 97 76.3
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 5.6e-36 154.1 97 76.3
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 5.6e-36 154.1 97 76.3
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 5.6e-36 154.1 97 76.3
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 5.6e-36 154.1 95 78.9
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 7.3e-36 153.7 95 77.9
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 7.3e-36 153.7 94 78.7
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 7.3e-36 153.7 95 81.1
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 9.6e-36 153.3 95 81.1
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 1.3e-35 152.9 94 78.7
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.6e-35 152.5 97 74.2
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.6e-35 152.5 95 77.9
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.6e-35 152.5 94 80.9
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.1e-35 152.1 95 80.0
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 2.1e-35 152.1 95 80.0
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 2.1e-35 152.1 95 76.8
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 2.1e-35 152.1 96 78.1
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 2.8e-35 151.8 95 76.8
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 2.8e-35 151.8 94 77.7
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 2.8e-35 151.8 95 75.8
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 2.8e-35 151.8 95 76.8
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.8e-35 151.8 97 74.2
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 2.8e-35 151.8 95 76.8
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 3.6e-35 151.4 95 78.9
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 4.8e-35 151.0 95 78.9
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 6.2e-35 150.6 96 74.0
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 6.2e-35 150.6 96 74.0
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 6.2e-35 150.6 96 74.0
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 6.2e-35 150.6 93 79.6
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 6.2e-35 150.6 93 80.6
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 8.1e-35 150.2 95 80.0
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.1e-34 149.8 95 78.9
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.8e-34 149.1 95 76.8
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.8e-34 149.1 95 76.8
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 4.0e-34 147.9 97 74.2
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 4.0e-34 147.9 95 77.9
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 5.3e-34 147.5 90 82.2
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 5.3e-34 147.5 95 75.8
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 5.8e-33 144.1 95 74.7
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 5.8e-33 144.1 108 67.6
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 1.7e-32 142.5 95 72.6
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 5.4e-31 137.5 138 55.1
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 9.3e-31 136.7 90 72.2
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.2e-30 136.3 90 74.4
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 1.6e-30 136.0 136 56.6
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 6.0e-30 134.0 125 60.8
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.8e-29 132.5 110 64.5
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 2.3e-29 132.1 76 81.6
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 1.1e-26 123.2 89 68.5
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 2.2e-24 115.5 95 56.8
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 5.5e-23 110.9 66 78.8
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 4.6e-22 107.8 93 57.0
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 3.9e-21 104.8 94 59.6
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 2.0e-17 92.4 92 53.3
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 4.9e-16 87.8 56 82.1
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 6.5e-16 87.4 88 58.0
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.4e-15 86.3 63 63.5
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 3.2e-15 85.1 51 88.2
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 3.5e-14 81.6 55 76.4
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 6.0e-14 80.9 92 45.7
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 2.3e-13 79.0 91 47.3
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 5.1e-13 77.8 49 79.6
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 4.3e-12 74.7 53 71.7
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.2e-11 72.4 67 58.2
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.2e-09 66.6 35 80.0
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.0e-09 65.9 66 53.0
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 7.6e-09 63.9 52 55.8
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 3.8e-08 61.6 35 71.4
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 3.8e-08 61.6 73 46.6
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 3.8e-08 61.6 67 49.3
Ca_31319_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 4.2e-07 58.2 72 45.8
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 9.3e-07 57.0 88 35.2
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 2.7e-06 55.5 90 41.1
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.6e-06 54.7 30 90.0


User provided reference genes

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