Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 0.0e+00 1314.3 733 100.0
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 3.1e-211 739.2 799 56.3
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 2.1e-207 726.5 766 56.3
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 3.5e-207 725.7 767 54.0
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 1.2e-202 710.7 790 53.0
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 4.5e-202 708.8 777 55.5
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 1.9e-200 703.4 767 55.3
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 4.2e-200 702.2 788 52.8
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 6.0e-199 698.4 767 54.9
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 3.0e-198 696.0 772 59.6
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 3.0e-198 696.0 762 54.7
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 1.5e-197 693.7 770 52.7
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 9.6e-197 691.0 790 49.7
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 2.8e-196 689.5 771 50.5
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 1.4e-195 687.2 808 48.8
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 6.9e-195 684.9 772 49.5
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 1.5e-194 683.7 786 48.7
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 3.4e-194 682.6 815 51.7
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 3.8e-193 679.1 786 54.3
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.8e-193 679.1 765 49.8
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 3.8e-193 679.1 783 55.3
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 1.1e-192 677.6 765 49.8
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 1.4e-192 677.2 826 52.8
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 5.5e-192 675.2 773 53.8
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 2.1e-191 673.3 766 50.7
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 6.1e-191 671.8 742 51.6
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 7.9e-191 671.4 800 50.0
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 1.0e-190 671.0 779 53.3
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 1.0e-190 671.0 765 53.7
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 1.8e-190 670.2 753 50.6
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 5.1e-190 668.7 758 49.6
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 8.7e-190 667.9 767 50.1
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 1.5e-189 667.2 764 53.1
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 1.5e-189 667.2 766 56.8
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 1.9e-189 666.8 788 56.5
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 1.9e-189 666.8 759 50.9
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 2.5e-189 666.4 770 57.3
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 7.4e-189 664.8 790 52.9
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 1.3e-188 664.1 704 57.5
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 3.7e-188 662.5 764 56.3
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 3.7e-188 662.5 775 55.4
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 6.3e-188 661.8 799 48.1
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 1.4e-187 660.6 792 49.7
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 1.8e-187 660.2 803 50.9
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 2.4e-187 659.8 785 54.3
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 3.1e-187 659.4 758 51.1
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 3.1e-187 659.4 784 51.5
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 4.1e-187 659.1 762 57.0
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 4.1e-187 659.1 785 48.3
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 5.3e-187 658.7 768 56.9
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 6.9e-187 658.3 768 51.8
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 1.5e-186 657.1 763 55.3
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 1.5e-186 657.1 763 55.2
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 2.0e-186 656.8 799 50.9
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 4.5e-186 655.6 788 48.0
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 1.7e-185 653.7 781 47.6
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 6.5e-185 651.7 760 56.8
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 8.5e-185 651.4 766 56.5
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 8.5e-185 651.4 766 56.5
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 1.9e-184 650.2 792 48.0
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 2.5e-184 649.8 847 48.6
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 4.2e-184 649.0 763 54.8
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 4.2e-184 649.0 783 49.6
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 5.5e-184 648.7 772 48.3
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.6e-183 647.1 808 50.7
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 3.6e-183 646.0 764 52.4
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 3.6e-183 646.0 859 48.1
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 4.6e-183 645.6 812 51.8
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 1.0e-182 644.4 763 51.0
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 1.0e-182 644.4 763 51.0
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 1.4e-182 644.0 758 47.6
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 1.8e-182 643.7 776 47.8
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 2.3e-182 643.3 767 46.9
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 3.0e-182 642.9 765 50.8
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 3.0e-182 642.9 772 52.2
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 3.9e-182 642.5 767 56.3
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.9e-182 642.5 765 47.2
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 5.1e-182 642.1 777 47.2
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 8.8e-182 641.3 783 49.3
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 2.0e-181 640.2 782 50.0
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 2.8e-180 636.3 776 47.6
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 3.7e-180 636.0 749 55.1
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 4.8e-180 635.6 782 49.0
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 1.1e-179 634.4 770 47.0
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 1.2e-178 630.9 768 50.7
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 1.5e-178 630.6 765 52.4
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 1.0e-177 627.9 814 51.2
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 1.3e-177 627.5 755 51.1
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 1.3e-177 627.5 738 52.2
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 2.2e-177 626.7 740 53.8
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 2.2e-177 626.7 820 46.5
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 6.7e-174 615.1 735 51.2
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 2.0e-173 613.6 764 45.7
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 9.7e-173 611.3 752 51.3
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 2.8e-172 609.8 743 56.3
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 2.8e-172 609.8 796 46.5
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 1.8e-171 607.1 784 46.6
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 3.1e-171 606.3 803 47.1
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 1.0e-169 601.3 738 48.8
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 1.7e-169 600.5 778 49.2
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 3.8e-169 599.4 446 67.7
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 1.2e-167 594.3 773 50.6
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 1.5e-165 587.4 753 51.7
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 4.4e-165 585.9 730 45.5
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 5.7e-165 585.5 778 44.9
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 1.5e-160 570.9 446 64.3
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 3.2e-160 569.7 684 48.0
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 4.2e-160 569.3 509 58.3
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 6.1e-159 565.5 770 49.7
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 4.0e-158 562.8 705 47.7
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 3.4e-157 559.7 465 61.3
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 1.0e-150 538.1 763 49.3
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 4.3e-144 516.2 710 45.9
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 3.5e-138 496.5 770 44.4
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.8e-134 484.2 762 39.8
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 1.8e-134 484.2 762 39.8
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 1.7e-132 477.6 425 59.3
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 1.6e-130 471.1 380 61.6
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.2e-127 461.5 397 59.4
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.0e-117 427.6 746 36.9
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 3.0e-113 413.7 721 37.2
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 1.2e-109 401.7 398 54.8
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 1.2e-106 391.7 778 36.2
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 4.9e-100 369.8 279 64.9
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 2.5e-96 357.5 514 40.3
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 8.4e-92 342.4 279 59.9
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 1.2e-90 338.6 279 57.7
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 2.1e-87 327.8 492 49.0
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 1.8e-86 324.7 496 44.8
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 2.1e-66 258.1 313 49.2
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 1.5e-64 251.9 201 61.2
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 2.1e-50 204.9 392 37.0
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 1.8e-41 175.3 169 51.5
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 9.8e-40 169.5 142 59.2
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 2.2e-39 168.3 159 52.2
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 2.4e-38 164.9 153 49.0
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 3.1e-30 137.9 104 62.5
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 1.7e-20 105.5 95 54.7
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 5.0e-20 104.0 100 49.0
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 3.6e-18 97.8 188 32.4
Gohir.A08G093462 Gossypium hirsutum HOM05D003588 ORTHO05D004252 3.6e-18 97.8 108 49.1
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 1.1e-11 76.3 71 50.7
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 4.3e-11 74.3 105 42.9
CDE02G3249 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 1.1e-09 69.7 36 94.4
AagrBONN_evm.TU.Sc2ySwM_228.5767 Anthoceros agrestis HOM05D003588 ORTHO05D004252 2.3e-09 68.6 71 49.3
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 8.9e-09 66.6 55 54.5
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 7.5e-08 63.5 54 55.6
MCO16G648 Micromonas commoda HOM05D003588 ORTHO05D004252 3.7e-07 61.2 101 34.7
Lsat_1_v5_gn_9_96101 Lactuca sativa HOM05D003588 ORTHO05D004252 6.4e-07 60.5 91 42.9
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 4.1e-06 57.8 46 52.2


User provided reference genes

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