Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 5.7e-311 1070.1 553 100.0
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.1e-232 810.1 580 73.8
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.4e-224 783.1 580 70.9
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 2.0e-223 779.2 565 72.7
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 9.4e-221 770.4 581 69.7
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.6e-220 768.5 572 70.3
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 6.1e-220 767.7 582 70.3
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.0e-219 766.9 581 69.4
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 1.4e-219 766.5 581 69.7
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.3e-219 765.8 572 70.5
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 2.3e-219 765.8 580 70.0
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 3.0e-219 765.4 572 70.3
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 3.0e-219 765.4 581 69.7
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 5.2e-219 764.6 573 70.3
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 3.4e-218 761.9 581 68.3
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 3.4e-218 761.9 581 69.0
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 4.4e-218 761.5 581 69.2
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 5.7e-218 761.1 572 69.6
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 7.5e-218 760.8 572 69.8
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 9.8e-218 760.4 579 69.8
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.8e-217 758.8 581 68.8
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 4.8e-217 758.1 572 69.4
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 6.3e-217 757.7 581 68.3
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.1e-216 756.9 579 69.8
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.1e-216 756.9 566 71.2
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.8e-216 756.1 571 69.4
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.1e-216 755.4 581 68.5
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 4.1e-216 755.0 574 69.2
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 5.4e-216 754.6 569 70.5
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 7.0e-216 754.2 571 69.2
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 9.1e-216 753.8 574 69.7
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 9.1e-216 753.8 448 88.8
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.2e-215 753.4 574 69.5
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 1.2e-215 753.4 582 68.6
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 2.0e-215 752.7 568 69.9
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 3.5e-215 751.9 581 68.0
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 7.7e-215 750.7 578 68.9
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.3e-214 750.0 562 69.9
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 2.9e-214 748.8 578 69.6
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 5.0e-214 748.0 572 68.7
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 8.6e-214 747.3 580 68.4
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.9e-213 746.1 574 69.2
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.3e-213 745.3 568 70.1
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 5.5e-213 744.6 581 66.8
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 7.2e-213 744.2 570 69.5
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 7.2e-213 744.2 579 68.4
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 9.5e-213 743.8 588 66.5
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.2e-212 743.4 557 70.2
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 2.8e-212 742.3 580 67.6
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 3.6e-212 741.9 566 68.6
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 4.7e-212 741.5 564 69.3
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 8.0e-212 740.7 568 69.7
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 8.0e-212 740.7 568 69.5
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.0e-211 740.3 568 69.7
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.4e-211 740.0 566 69.6
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 3.0e-211 738.8 572 69.4
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 5.2e-211 738.0 573 66.8
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 5.2e-211 738.0 572 68.4
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 6.8e-211 737.6 579 66.8
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 6.8e-211 737.6 571 68.1
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 6.8e-211 737.6 578 67.5
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 8.9e-211 737.3 580 67.6
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.2e-210 736.9 581 66.8
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.5e-210 736.5 580 67.2
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.5e-210 736.5 580 67.2
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.5e-210 736.5 580 67.1
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 2.6e-210 735.7 580 67.6
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.6e-210 735.7 571 67.6
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 4.4e-210 734.9 584 67.5
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.8e-210 733.8 564 67.9
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 2.2e-209 732.6 566 69.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 2.8e-209 732.3 580 66.6
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 2.8e-209 732.3 581 66.6
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 2.8e-209 732.3 577 67.9
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 4.9e-209 731.5 571 68.7
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 6.3e-209 731.1 581 67.5
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 8.3e-209 730.7 581 66.3
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 1.1e-208 730.3 579 66.5
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.1e-208 730.3 581 66.6
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.4e-208 729.2 575 66.6
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 2.4e-208 729.2 584 66.3
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 4.1e-208 728.4 571 67.4
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 4.1e-208 728.4 584 66.3
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 5.4e-208 728.0 573 67.2
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 5.4e-208 728.0 570 68.4
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 5.4e-208 728.0 578 66.3
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 5.4e-208 728.0 602 64.5
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 5.4e-208 728.0 584 66.1
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 7.0e-208 727.6 576 67.0
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 9.2e-208 727.2 576 67.5
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.2e-207 726.9 579 67.5
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.7e-207 725.7 577 66.9
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 3.5e-207 725.3 680 58.4
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 3.5e-207 725.3 575 68.0
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 5.9e-207 724.5 545 70.5
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 1.3e-206 723.4 582 66.3
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.7e-206 723.0 574 67.4
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 6.6e-206 721.1 570 67.5
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 8.6e-206 720.7 567 67.7
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.1e-205 720.3 579 67.2
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.5e-205 719.9 594 65.5
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.3e-205 718.4 580 67.4
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.2e-204 716.8 579 66.1
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 1.2e-204 716.8 567 66.7
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.2e-204 716.8 509 72.1
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.6e-204 716.5 553 69.3
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.0e-203 711.8 558 69.0
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 6.8e-203 711.1 580 66.4
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 2.2e-201 706.1 671 58.3
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.9e-200 703.0 568 65.8
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 3.2e-200 702.2 575 66.4
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 7.8e-199 697.6 576 64.2
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 5.6e-197 691.4 575 63.8
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 3.6e-196 688.7 566 64.1
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.4e-195 686.8 579 62.5
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.8e-195 686.4 513 69.6
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 8.3e-193 677.6 579 63.9
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.7e-191 672.5 522 69.2
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 5.2e-187 658.3 547 64.9
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 1.7e-182 643.3 555 62.3
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.1e-172 609.8 478 68.4
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 9.6e-165 584.3 496 63.5
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 4.0e-163 578.9 566 56.5
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 7.9e-159 564.7 533 59.5
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 9.6e-157 557.8 433 69.7
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 4.2e-144 515.8 365 73.4
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 3.5e-143 512.7 507 59.2
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 5.3e-131 472.2 526 50.4
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 5.7e-125 452.2 372 65.1
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 4.4e-117 426.0 290 75.5
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 3.1e-115 419.9 560 49.5
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 2.9e-105 386.7 515 46.4
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.2e-103 381.3 251 76.5
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.6e-103 379.8 401 56.6
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 4.4e-93 346.3 378 52.6
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 7.5e-93 345.5 315 62.2
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.5e-88 331.3 232 72.4
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.6e-77 293.9 184 81.5
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.9e-67 261.2 229 64.6
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 6.2e-63 246.1 241 53.9
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 1.2e-58 231.9 249 46.6
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 2.8e-55 220.7 210 57.1
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 8.1e-47 192.6 262 44.3
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 9.9e-45 185.7 115 77.4
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 4.2e-35 153.7 128 60.2
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 3.1e-30 137.5 137 55.5
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.9e-29 133.3 177 50.3
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 3.4e-21 107.5 94 55.3
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 9.4e-19 99.4 92 53.3
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 9.7e-16 89.4 52 84.6
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 9.7e-16 89.4 52 84.6
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.3e-15 89.0 53 73.6
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 1.4e-14 85.5 158 39.9
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 5.9e-13 80.1 65 63.1
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 3.8e-12 77.4 86 47.7
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 9.7e-08 62.8 30 86.7
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 9.7e-08 62.8 30 86.7
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 1.7e-07 62.0 57 52.6
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.8e-06 58.5 36 77.8


User provided reference genes

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