Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1939.9 982 100.0
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 0.0e+00 1586.2 951 85.5
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1346.3 981 66.9
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1345.5 977 66.4
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1345.5 977 67.2
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1342.8 983 66.6
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1338.9 977 66.7
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1338.2 979 67.3
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1334.3 980 66.5
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1328.2 982 65.8
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1324.3 979 65.9
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1319.7 984 65.8
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1319.3 977 64.8
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1318.9 978 65.7
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1318.1 979 66.7
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1317.4 954 66.8
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1312.7 984 64.6
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1312.4 979 66.5
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1310.8 978 64.9
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1307.7 979 64.6
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1303.9 978 65.0
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1298.1 978 64.0
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1297.7 977 64.1
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1295.0 978 63.6
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1294.6 978 63.5
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1294.6 978 64.2
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1294.6 982 65.0
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1291.9 991 65.2
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1291.9 977 63.3
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1291.6 984 63.1
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1289.2 980 64.8
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1288.1 979 64.7
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1286.9 978 63.5
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1286.6 978 63.4
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1285.8 980 64.7
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1283.5 979 63.6
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1282.7 981 63.8
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1282.3 979 64.1
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1282.3 978 63.5
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1281.5 986 64.1
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1281.5 980 64.1
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1280.4 983 63.7
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1279.2 978 63.0
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1278.8 980 64.4
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1278.1 983 64.5
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1276.5 979 64.5
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1276.2 979 63.7
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1275.4 978 62.9
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1273.1 978 63.1
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1273.1 979 64.4
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1272.7 979 63.5
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1272.3 964 65.6
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1271.9 964 65.7
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1271.9 978 63.3
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1271.9 979 63.3
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1271.5 964 65.7
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1271.5 978 63.4
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1271.1 977 64.2
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1271.1 1007 62.9
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1270.8 981 63.7
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1269.6 985 62.9
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1268.1 980 63.6
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1268.1 1000 63.2
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1267.3 979 63.7
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1266.5 978 63.1
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1265.0 980 63.5
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1263.8 977 62.0
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1263.8 985 64.7
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1261.9 964 64.2
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1260.0 986 64.4
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1256.1 980 64.0
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1255.4 978 62.5
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 0.0e+00 1252.3 965 63.0
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1250.0 1005 61.5
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1249.2 982 63.0
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1248.8 955 63.9
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1245.7 978 62.1
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1241.9 979 62.3
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1240.3 978 61.9
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1239.9 980 61.9
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1238.4 978 61.8
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1236.1 1076 58.5
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1233.4 1075 58.4
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1232.2 984 61.3
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1231.1 978 61.3
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1230.3 984 61.0
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1230.3 984 61.0
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 0.0e+00 1230.3 985 61.3
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1229.5 978 61.5
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1227.2 978 61.6
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 0.0e+00 1226.8 978 60.6
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1226.1 978 60.9
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1225.7 999 60.3
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1225.3 979 61.3
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1224.5 978 60.9
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 0.0e+00 1224.5 964 61.2
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 0.0e+00 1221.8 984 60.2
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1221.5 965 62.0
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1220.3 965 62.0
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1219.1 964 61.1
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1218.8 984 60.6
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1218.4 984 60.4
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1218.0 987 60.4
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1217.6 998 60.2
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1217.6 988 61.0
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1211.8 979 59.8
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1210.3 984 59.9
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 0.0e+00 1208.7 983 59.9
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 0.0e+00 1208.4 964 60.6
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1199.9 1006 59.8
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1199.9 977 59.3
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1199.5 977 59.2
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1181.0 953 60.4
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1173.3 999 58.3
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1164.4 900 64.3
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1160.2 968 59.7
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 0.0e+00 1159.4 977 57.6
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 0.0e+00 1130.2 1006 56.2
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1123.2 984 57.0
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1112.4 978 57.3
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1100.9 847 62.7
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1092.0 893 60.4
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.2e-306 1056.6 846 59.1
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 8.1e-300 1033.9 878 58.8
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 2.1e-295 1019.2 808 62.0
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.4e-288 996.5 979 51.1
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 2.7e-287 992.3 1002 51.0
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 6.1e-247 858.2 953 47.1
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.0e-237 826.6 541 73.2
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 2.6e-237 826.2 658 61.1
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.3e-225 787.3 681 54.6
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 1.4e-214 750.7 884 44.1
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 2.1e-202 710.3 658 54.7
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.4e-195 686.8 530 64.3
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.1e-170 604.0 806 43.2
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.0e-157 560.8 362 73.8
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 1.7e-151 541.2 909 38.1
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 9.7e-136 488.8 296 80.1
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-134 485.3 848 35.3
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 6.5e-132 476.1 296 77.7
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 5.7e-128 463.0 416 55.3
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 6.3e-127 459.5 282 79.1
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 2.9e-116 424.1 1049 29.1
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.9e-111 407.5 256 75.0
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 4.6e-109 400.2 1002 30.4
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 3.2e-94 350.9 667 37.8
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 6.0e-93 346.7 315 54.9
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 9.3e-78 296.2 428 38.3
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 3.2e-70 271.2 375 39.7
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 8.1e-66 256.5 362 40.9
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.3e-63 249.2 319 42.9
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.1e-58 231.9 257 46.3
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 3.4e-56 224.6 147 77.6
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.0e-55 223.0 251 47.8
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 2.5e-54 218.4 185 56.8
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 2.8e-50 204.9 127 74.0
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 2.4e-49 201.8 125 74.4
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 4.5e-48 197.6 1031 23.3
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.7e-45 188.3 125 71.2
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 2.0e-43 182.2 105 81.0
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 2.8e-42 178.3 139 60.4
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 8.5e-39 166.8 200 50.0
BolC3t13097H Brassica oleracea HOM05D003951 ORTHO05D020105 3.9e-36 157.9 91 76.9
BcaB01g05472 Brassica carinata HOM05D003951 ORTHO05D020105 8.8e-36 156.8 91 76.9
C03p05850 Brassica napus HOM05D003951 ORTHO05D020105 8.8e-36 156.8 91 76.9
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 5.2e-28 131.0 84 72.6
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 7.2e-22 110.5 396 25.8
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 7.5e-19 100.5 80 58.8
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 8.3e-18 97.1 62 72.6
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 3.1e-17 95.1 63 71.4
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 9.1e-17 93.6 121 47.1
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 9.1e-17 93.6 121 47.1
CiPaw.07G205500 Carya illinoinensis HOM05D003951 ORTHO05D020105 7.7e-16 90.5 64 65.6
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 7.7e-16 90.5 82 53.7
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 1.3e-15 89.7 52 76.9
Nn3g18130 Nelumbo nucifera HOM05D003951 ORTHO05D020105 1.7e-15 89.4 68 61.8
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 3.2e-14 85.1 122 41.0
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 6.1e-13 80.9 60 66.7
SHI18664 Sapria himalayana HOM05D003951 ORTHO05D020105 2.3e-12 79.0 143 34.3
Psat6g121680 Pisum sativum HOM05D000840 ORTHO05D000670 3.0e-12 78.6 45 75.6
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 5.7e-11 74.3 60 61.7
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.3e-10 73.2 60 61.7


User provided reference genes

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