Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.3e-133 478.0 247 100.0
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.2e-105 386.0 247 81.0
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 2.6e-61 239.6 258 52.3
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 5.8e-61 238.4 227 58.6
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 2.2e-60 236.5 244 55.3
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 6.4e-60 235.0 252 52.4
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 8.3e-60 234.6 245 52.7
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 2.7e-58 229.6 258 55.0
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 3.5e-58 229.2 245 54.3
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 6.0e-58 228.4 253 51.4
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 1.7e-57 226.9 235 55.7
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.3e-57 226.5 238 54.6
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 3.9e-57 225.7 257 51.4
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 6.6e-57 224.9 243 53.5
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 6.6e-57 224.9 234 55.1
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 8.6e-57 224.6 245 55.1
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 2.5e-56 223.0 244 49.6
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 3.3e-56 222.6 232 54.7
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 4.3e-56 222.2 242 50.8
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 7.3e-56 221.5 246 50.0
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 2.8e-55 219.5 266 50.8
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 8.1e-55 218.0 243 52.7
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.4e-54 217.2 260 48.1
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 1.8e-54 216.9 248 49.6
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 3.1e-54 216.1 248 50.8
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 4.0e-54 215.7 246 48.0
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 6.8e-54 214.9 251 52.2
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 8.9e-54 214.5 260 48.5
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 3.4e-53 212.6 256 48.0
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 4.4e-53 212.2 256 47.7
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 4.4e-53 212.2 263 50.6
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 5.8e-53 211.8 255 51.8
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 7.6e-53 211.5 252 50.0
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 9.9e-53 211.1 258 50.0
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 1.3e-52 210.7 246 51.2
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 2.2e-52 209.9 252 49.6
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 2.2e-52 209.9 256 48.4
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.9e-52 209.5 255 49.4
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 2.9e-52 209.5 240 53.8
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 4.9e-52 208.8 260 48.1
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 6.4e-52 208.4 254 47.6
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 1.1e-51 207.6 254 47.6
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 1.4e-51 207.2 255 48.2
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 1.4e-51 207.2 249 47.8
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 1.9e-51 206.8 240 50.4
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.9e-51 206.8 248 46.8
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 2.4e-51 206.5 270 47.4
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 3.2e-51 206.1 253 50.2
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 3.2e-51 206.1 253 49.8
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 7.1e-51 204.9 256 50.0
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 7.1e-51 204.9 252 49.6
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 7.1e-51 204.9 277 45.8
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 9.2e-51 204.5 249 47.0
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 1.2e-50 204.1 247 47.8
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 2.1e-50 203.4 255 49.0
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 2.1e-50 203.4 249 45.4
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 6.0e-50 201.8 282 43.3
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 7.8e-50 201.4 249 45.4
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 1.0e-49 201.1 252 49.2
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 2.3e-49 199.9 253 49.0
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 3.0e-49 199.5 230 53.9
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 5.1e-49 198.7 267 44.6
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 5.1e-49 198.7 246 47.2
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 6.6e-49 198.4 276 46.0
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 6.6e-49 198.4 248 50.0
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 6.6e-49 198.4 239 51.0
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 8.6e-49 198.0 256 44.5
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 4.3e-48 195.7 275 44.4
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.3e-48 194.9 272 46.0
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 1.2e-47 194.1 255 44.3
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.8e-46 190.3 224 50.9
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 2.4e-46 189.9 220 50.0
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 3.1e-46 189.5 246 45.5
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 1.2e-45 187.6 286 43.0
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 1.5e-45 187.2 264 45.5
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 2.0e-45 186.8 252 46.4
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.6e-45 184.9 266 45.1
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-44 183.7 215 48.8
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 2.2e-44 183.3 223 48.9
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 4.9e-44 182.2 217 47.9
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 4.9e-44 182.2 221 47.5
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 4.9e-44 182.2 251 43.4
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 4.9e-44 182.2 261 45.2
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 4.9e-44 182.2 230 46.5
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.1e-43 181.0 197 50.8
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.1e-43 181.0 217 51.6
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 1.1e-43 181.0 278 42.8
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 1.4e-43 180.6 218 47.7
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 1.9e-43 180.3 217 51.2
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 4.2e-43 179.1 265 42.3
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 5.4e-43 178.7 222 50.5
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 7.1e-43 178.3 290 40.0
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 9.3e-43 177.9 230 46.5
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 2.1e-42 176.8 240 43.3
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 2.1e-42 176.8 214 50.0
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 3.5e-42 176.0 229 44.5
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 3.5e-42 176.0 251 44.2
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 1.0e-41 174.5 226 46.9
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 1.0e-41 174.5 226 46.0
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.3e-41 174.1 228 47.4
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-41 173.7 227 45.8
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 2.3e-41 173.3 228 45.6
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 2.3e-41 173.3 225 48.4
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 5.1e-41 172.2 275 44.4
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 5.6e-40 168.7 194 50.0
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 7.3e-40 168.3 256 44.1
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 7.3e-40 168.3 239 46.9
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 3.6e-39 166.0 202 47.5
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 1.8e-38 163.7 219 48.4
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 4.0e-38 162.5 230 46.1
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 2.0e-37 160.2 240 40.4
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 3.4e-37 159.5 234 44.4
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 9.9e-37 157.9 126 61.9
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.9e-36 156.4 222 44.1
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 4.9e-36 155.6 232 44.8
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 8.4e-36 154.8 114 64.9
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 8.4e-36 154.8 226 45.1
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.1e-35 154.5 237 45.1
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 3.2e-35 152.9 229 41.0
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-34 151.0 232 42.2
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.6e-34 150.6 247 40.1
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.9e-34 148.3 101 69.3
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 2.3e-33 146.7 192 44.8
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 8.7e-33 144.8 233 43.3
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.9e-32 143.7 248 40.7
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.9e-32 143.7 230 40.0
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.1e-30 137.9 101 61.4
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 4.0e-30 136.0 132 56.1
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.3e-28 131.0 117 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 6.4e-28 128.6 249 35.3
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 6.4e-28 128.6 252 36.1
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 2.4e-27 126.7 252 37.7
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 6.0e-26 122.1 284 31.0
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 1.3e-25 120.9 100 57.0
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 3.9e-25 119.4 100 58.0
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 1.9e-24 117.1 100 56.0
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 1.9e-24 117.1 100 56.0
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 3.7e-23 112.8 211 36.5
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 4.8e-23 112.5 310 28.7
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 6.2e-23 112.1 244 35.7
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 3.1e-22 109.8 95 58.9
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 3.4e-21 106.3 86 60.5
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 5.8e-21 105.5 107 51.4
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 2.9e-20 103.2 92 55.4
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 8.4e-20 101.7 92 53.3
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 2.5e-19 100.1 264 33.0
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 3.2e-19 99.8 92 52.2
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 1.2e-18 97.8 222 34.7
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 3.5e-18 96.3 86 55.8
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 3.0e-17 93.2 77 57.1
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 1.3e-15 87.8 161 38.5
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.4e-13 79.7 71 54.9
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 2.9e-12 76.6 100 45.0
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 5.1e-09 65.9 78 51.3
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 6.3e-07 58.9 65 47.7


User provided reference genes

Program Settings