Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.3e-134 482.3 245 100.0
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 4.2e-120 434.9 246 91.5
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.1e-75 287.3 267 61.8
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 7.7e-74 281.2 250 64.0
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 7.7e-74 281.2 250 64.0
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.0e-73 278.5 233 64.8
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 8.5e-73 277.7 247 61.5
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 9.4e-72 274.2 255 60.0
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 9.4e-72 274.2 249 59.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.7e-71 272.7 247 61.1
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.4e-70 270.4 248 60.1
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 5.2e-70 268.5 243 61.7
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 5.2e-70 268.5 247 59.1
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.7e-70 268.1 249 59.4
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 6.7e-70 268.1 252 57.9
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 6.7e-70 268.1 248 59.3
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.2e-69 267.3 249 58.6
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.5e-69 266.9 248 59.7
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.0e-69 266.5 249 59.8
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 4.4e-69 265.4 252 59.9
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.4e-69 265.4 249 57.8
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 5.7e-69 265.0 252 59.1
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.7e-69 265.0 250 59.2
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.3e-68 263.8 252 59.5
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.3e-68 263.8 250 57.2
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.7e-68 263.5 252 58.7
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.7e-68 263.5 248 58.9
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.2e-68 263.1 250 59.2
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.8e-68 262.7 250 57.6
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.7e-68 262.3 250 58.4
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 3.7e-68 262.3 259 57.9
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 3.7e-68 262.3 248 58.9
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 4.8e-68 261.9 247 58.3
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 6.3e-68 261.5 252 57.5
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 8.2e-68 261.2 247 59.9
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.1e-67 260.8 250 56.0
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.1e-67 260.8 250 58.0
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.4e-67 260.4 255 55.3
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.8e-67 260.0 252 58.3
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 2.4e-67 259.6 250 56.4
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 3.1e-67 259.2 252 58.3
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 4.1e-67 258.8 251 57.0
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 5.3e-67 258.5 252 57.9
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 9.1e-67 257.7 250 57.2
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.2e-66 257.3 248 59.3
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.2e-66 257.3 248 58.1
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.6e-66 256.9 248 58.1
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 2.7e-66 256.1 248 58.9
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 2.7e-66 256.1 254 57.9
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 4.5e-66 255.4 250 56.4
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.5e-66 255.4 247 58.7
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 4.5e-66 255.4 259 56.8
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 4.5e-66 255.4 243 59.3
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 5.9e-66 255.0 249 55.8
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 7.7e-66 254.6 236 58.9
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.0e-65 254.2 247 58.3
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.0e-65 254.2 249 56.6
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.0e-65 254.2 253 57.7
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-65 253.8 249 56.6
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-65 253.8 249 56.6
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-65 253.8 249 56.6
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-65 253.8 249 56.6
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-65 253.8 250 56.0
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.3e-65 253.8 241 56.4
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.2e-65 253.1 250 56.0
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.2e-65 253.1 254 57.1
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.9e-65 252.7 249 56.6
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.9e-65 252.7 250 56.0
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.8e-65 252.3 235 59.6
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.8e-65 252.3 235 59.6
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 8.5e-65 251.1 250 55.6
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 8.5e-65 251.1 257 52.1
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.1e-64 250.8 245 53.5
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.5e-64 250.4 246 54.9
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 4.2e-64 248.8 250 56.4
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.2e-64 248.8 247 55.9
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 7.2e-64 248.1 245 55.5
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 9.4e-64 247.7 248 54.8
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.2e-63 247.3 231 58.9
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.2e-63 247.3 259 54.8
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.6e-63 246.9 250 57.2
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 2.1e-63 246.5 247 53.0
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 2.1e-63 246.5 247 54.3
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.1e-63 246.5 246 53.7
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.7e-63 246.1 246 53.7
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 3.6e-63 245.7 248 56.0
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.6e-63 245.7 246 52.8
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 4.7e-63 245.4 242 53.3
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 4.7e-63 245.4 267 52.4
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 6.1e-63 245.0 248 53.2
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 6.1e-63 245.0 241 56.4
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 6.1e-63 245.0 252 56.7
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 8.0e-63 244.6 244 52.9
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 8.0e-63 244.6 227 58.6
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 8.0e-63 244.6 253 53.0
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.0e-62 244.2 248 56.9
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.8e-62 243.4 249 53.4
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.3e-62 243.0 249 53.4
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.3e-62 243.0 244 52.5
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 2.3e-62 243.0 242 56.2
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 3.0e-62 242.7 215 60.0
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 4.0e-62 242.3 245 53.5
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 5.2e-62 241.9 242 55.0
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 5.2e-62 241.9 261 53.6
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 8.8e-62 241.1 263 55.9
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.2e-61 240.7 245 53.9
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.0e-61 240.0 246 52.0
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 2.0e-61 240.0 259 52.1
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 2.6e-61 239.6 251 52.2
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 7.5e-61 238.0 251 52.6
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 9.8e-61 237.7 248 55.2
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.7e-60 236.9 244 55.3
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.8e-60 236.1 244 52.0
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.8e-60 236.1 230 57.0
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 4.8e-60 235.3 250 52.4
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 6.3e-60 235.0 253 54.2
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 8.3e-60 234.6 246 52.0
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.3e-60 234.6 248 51.6
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 3.1e-59 232.6 244 52.0
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 3.1e-59 232.6 244 52.0
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 3.1e-59 232.6 244 52.0
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 5.4e-59 231.9 252 52.4
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.0e-58 229.9 255 52.9
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.0e-57 227.6 237 54.0
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.3e-57 227.3 244 50.8
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.9e-57 226.1 223 57.4
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 6.5e-57 224.9 315 43.2
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.5e-56 223.8 245 50.6
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 3.2e-56 222.6 226 55.8
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.2e-55 220.7 212 54.2
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 6.1e-55 218.4 205 58.0
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 8.0e-55 218.0 323 42.7
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.0e-54 217.6 240 51.2
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.0e-53 213.4 241 51.5
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.3e-52 210.7 228 52.6
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 9.2e-51 204.5 221 52.0
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 4.5e-50 202.2 259 46.3
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 2.3e-49 199.9 246 48.4
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 9.5e-48 194.5 148 66.2
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.6e-47 193.7 143 66.4
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 1.8e-46 190.3 287 43.2
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 4.0e-46 189.1 139 66.9
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 8.9e-46 188.0 317 39.1
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 2.9e-44 183.0 246 46.7
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 9.2e-43 177.9 243 44.9
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.7e-41 173.7 207 47.8
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.0e-41 172.9 163 54.6
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.0e-41 172.2 163 54.0
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.4e-38 164.1 112 68.8
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 3.4e-37 159.5 119 68.1
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.9e-35 153.7 191 50.8
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.2e-31 141.0 292 36.3
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.1e-30 137.9 183 41.5
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.6e-26 122.5 91 64.8
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.8e-23 113.2 91 58.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 6.0e-18 95.5 121 37.2
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.3e-17 94.4 129 45.7
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.3e-17 93.6 128 42.2
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.1e-16 91.3 72 63.9
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.1e-14 83.2 128 46.1
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 4.4e-13 79.3 96 49.0
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.9e-11 73.9 106 41.5
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.7e-09 67.4 130 40.8
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 3.0e-09 66.6 120 41.7
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.5e-08 64.3 81 45.7
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 7.3e-08 62.0 74 48.6
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.3e-07 61.2 74 50.0
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 4.8e-07 59.3 150 30.7


User provided reference genes

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