Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1093 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 3.1e-60 235.0 121 100.0
CDE08G1224 Ceratophyllum demersum HOM05D003424 ORTHO05D004025 1.2e-56 223.0 118 98.3
Atru.chr1.1209 Acer truncatum HOM05D003424 ORTHO05D004025 6.5e-50 200.7 120 84.2
MELO3C026327.2 Cucumis melo HOM05D003424 ORTHO05D004025 6.5e-50 200.7 120 83.3
CsaV3_4G027730 Cucumis sativus L. HOM05D003424 ORTHO05D004025 6.5e-50 200.7 120 83.3
PGR004G2306 Punica granatum HOM05D003424 ORTHO05D004025 1.9e-49 199.1 120 83.3
Lalb_Chr08g0235171 Lupinus albus HOM05D003424 ORTHO05D004025 5.5e-49 197.6 120 80.8
Lalb_Chr08g0235181 Lupinus albus HOM05D003424 ORTHO05D004025 5.5e-49 197.6 120 80.8
Dinv39664 Davidia involucrata HOM05D003424 ORTHO05D004025 7.2e-49 197.2 120 82.5
Manes.09G010300 Manihot esculenta HOM05D003424 ORTHO05D004025 7.2e-49 197.2 120 80.8
Manes.09G010401 Manihot esculenta HOM05D003424 ORTHO05D004025 7.2e-49 197.2 120 80.8
ATR0329G046 Amborella trichopoda HOM05D003424 ORTHO05D004025 9.4e-49 196.8 120 80.0
Manes.03G083194 Manihot esculenta HOM05D003424 ORTHO05D004025 9.4e-49 196.8 120 80.8
Manes.03G083290 Manihot esculenta HOM05D003424 ORTHO05D004025 9.4e-49 196.8 120 80.8
Manes.03G083322 Manihot esculenta HOM05D003424 ORTHO05D004025 9.4e-49 196.8 120 80.8
TAR623G1380 Trochodendron aralioides HOM05D003424 ORTHO05D004025 9.4e-49 196.8 120 83.3
Potri.006G047600 Populus trichocarpa HOM05D003424 ORTHO05D004025 1.2e-48 196.4 120 80.8
Sed0005407 Sechium edule HOM05D003424 ORTHO05D004025 1.2e-48 196.4 120 81.7
MD12G1083100 Malus domestica HOM05D003424 ORTHO05D004025 2.1e-48 195.7 120 80.8
SEGI_12156 Sequoiadendron giganteum HOM05D003424 ORTHO05D004025 2.1e-48 195.7 120 82.5
COL.COLO4_36514 Corchorus olitorius HOM05D003424 ORTHO05D004025 2.7e-48 195.3 120 80.0
Prupe.7G052700 Prunus persica HOM05D003424 ORTHO05D004025 2.7e-48 195.3 120 80.0
Hund15356 Selenicereus undatus HOM05D003424 ORTHO05D004025 2.7e-48 195.3 120 79.2
arahy.Tifrunner.gnm1.ann1.MH7EBB Arachis hypogaea HOM05D003424 ORTHO05D004025 3.6e-48 194.9 120 81.7
arahy.Tifrunner.gnm1.ann1.ZS3MQE Arachis hypogaea HOM05D003424 ORTHO05D004025 3.6e-48 194.9 120 81.7
Phvul.007G250100 Phaseolus vulgaris HOM05D003424 ORTHO05D004025 3.6e-48 194.9 120 80.8
Sabra16G0048600 Salix brachista HOM05D003424 ORTHO05D004025 3.6e-48 194.9 120 80.8
Hma1.2p1_0110F.1_g052940 Hydrangea macrophylla HOM05D003424 ORTHO05D004025 4.7e-48 194.5 118 82.2
MD14G1078200 Malus domestica HOM05D003424 ORTHO05D004025 4.7e-48 194.5 120 79.2
Mapoly0007s0188 Marchantia polymorpha HOM05D003424 ORTHO05D004025 4.7e-48 194.5 120 80.8
Glyma.02G187100 Glycine max HOM05D003424 ORTHO05D004025 6.1e-48 194.1 120 80.8
RcHm_v2.0_Chr3g0483891 Rosa chinensis HOM05D003424 ORTHO05D004025 6.1e-48 194.1 120 80.0
Lalb_Chr23g0274141 Lupinus albus HOM05D003424 ORTHO05D004025 8.0e-48 193.7 120 78.3
TWI77G0522 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 8.0e-48 193.7 120 79.2
HPP92_006701 Vanilla planifolia HOM05D003424 ORTHO05D004025 8.0e-48 193.7 120 81.7
CiPaw.09G040700 Carya illinoinensis HOM05D003424 ORTHO05D004025 1.0e-47 193.4 120 80.0
Hund12364 Selenicereus undatus HOM05D003424 ORTHO05D004025 1.0e-47 193.4 120 78.3
Sc19g0008510 Simmondsia chinensis HOM05D003424 ORTHO05D004025 1.0e-47 193.4 120 78.3
Pp3c8_15010 Physcomitrium patens HOM05D003424 ORTHO05D004025 1.4e-47 193.0 120 80.0
Potri.016G043800 Populus trichocarpa HOM05D003424 ORTHO05D004025 1.8e-47 192.6 120 80.0
Sabra06G0033100 Salix brachista HOM05D003424 ORTHO05D004025 1.8e-47 192.6 120 79.2
ClCG04G003770 Citrullus lanatus HOM05D003424 ORTHO05D004025 2.3e-47 192.2 130 76.2
Gohir.A11G309600 Gossypium hirsutum HOM05D003424 ORTHO05D004025 2.3e-47 192.2 120 78.3
Lj5g0010982 Lotus japonicus HOM05D003424 ORTHO05D004025 2.3e-47 192.2 120 79.2
Glyma.10G106100 Glycine max HOM05D003424 ORTHO05D004025 3.0e-47 191.8 120 79.2
Lsat_1_v5_gn_8_117161 Lactuca sativa HOM05D003424 ORTHO05D004025 3.0e-47 191.8 120 79.2
THA.LOC104801979 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 3.0e-47 191.8 120 78.3
vmacro09050 Vaccinium macrocarpon HOM05D003424 ORTHO05D004025 3.0e-47 191.8 120 79.2
Duzib093G1716 Durio zibethinus HOM05D003424 ORTHO05D004025 5.2e-47 191.0 120 77.5
VMungo0720G2843 Vigna mungo HOM05D003424 ORTHO05D004025 5.2e-47 191.0 120 79.2
CiPaw.10G035800 Carya illinoinensis HOM05D003424 ORTHO05D004025 6.8e-47 190.7 120 78.3
FvH4_6g24580 Fragaria vesca HOM05D003424 ORTHO05D004025 6.8e-47 190.7 120 79.2
Gohir.D11G325000 Gossypium hirsutum HOM05D003424 ORTHO05D004025 6.8e-47 190.7 120 78.3
Gorai.007G355800 Gossypium raimondii HOM05D003424 ORTHO05D004025 6.8e-47 190.7 120 78.3
HanXRQChr08g0229101 Helianthus annuus HOM05D003424 ORTHO05D004025 6.8e-47 190.7 120 78.3
BcaC07g40060 Brassica carinata HOM05D003424 ORTHO05D004025 8.8e-47 190.3 118 79.7
Eucgr.A02306 Eucalyptus grandis HOM05D003424 ORTHO05D004025 8.8e-47 190.3 119 79.0
TWI53G0167 Tripterygium wilfordii HOM05D003424 ORTHO05D004025 8.8e-47 190.3 120 78.3
Aa31LG10G12160 Aethionema arabicum HOM05D003424 ORTHO05D004025 1.2e-46 189.9 118 78.0
Thecc.05G303700 Theobroma cacao HOM05D003424 ORTHO05D004025 1.2e-46 189.9 120 76.7
HanXRQChr09g0258441 Helianthus annuus HOM05D003424 ORTHO05D004025 1.5e-46 189.5 120 77.5
BcaB02g08321 Brassica carinata HOM05D003424 ORTHO05D004025 2.0e-46 189.1 118 78.8
A04p03210 Brassica napus HOM05D003424 ORTHO05D004025 2.0e-46 189.1 118 78.8
A09p50210 Brassica napus HOM05D003424 ORTHO05D004025 2.0e-46 189.1 118 78.8
C04p35090 Brassica napus HOM05D003424 ORTHO05D004025 2.0e-46 189.1 118 78.8
BolC4t25065H Brassica oleracea HOM05D003424 ORTHO05D004025 2.0e-46 189.1 118 78.8
BraA04t16043Z Brassica rapa HOM05D003424 ORTHO05D004025 2.0e-46 189.1 118 78.8
BraA09t40471Z Brassica rapa HOM05D003424 ORTHO05D004025 2.0e-46 189.1 118 78.8
Carub.0005s2414 Capsella rubella HOM05D003424 ORTHO05D004025 2.0e-46 189.1 119 80.7
Cfa016772 Carpinus fangiana HOM05D003424 ORTHO05D004025 2.0e-46 189.1 120 77.5
Haze_19783 Corylus avellana HOM05D003424 ORTHO05D004025 2.0e-46 189.1 120 77.5
Gohir.D11G324900 Gossypium hirsutum HOM05D003424 ORTHO05D004025 2.0e-46 189.1 120 77.5
Gorai.007G355700 Gossypium raimondii HOM05D003424 ORTHO05D004025 2.0e-46 189.1 120 77.5
Pp3c24_6740 Physcomitrium patens HOM05D003424 ORTHO05D004025 2.0e-46 189.1 120 79.2
Sp5g05310 Schrenkiella parvula HOM05D003424 ORTHO05D004025 2.0e-46 189.1 118 78.8
Actinidia17671 Actinidia chinensis HOM05D003424 ORTHO05D004025 2.6e-46 188.7 120 77.5
AL5G38830 Arabidopsis lyrata HOM05D003424 ORTHO05D004025 2.6e-46 188.7 118 78.8
BolC8t50881H Brassica oleracea HOM05D003424 ORTHO05D004025 3.4e-46 188.3 118 78.8
ECA232G2680 Erigeron canadensis HOM05D003424 ORTHO05D004025 3.4e-46 188.3 120 77.5
THA.LOC104824428 Tarenaya hassleriana HOM05D003424 ORTHO05D004025 4.4e-46 188.0 120 75.8
BcaC07g40058 Brassica carinata HOM05D003424 ORTHO05D004025 7.5e-46 187.2 118 78.0
C08p32690 Brassica napus HOM05D003424 ORTHO05D004025 7.5e-46 187.2 118 78.0
Duzib128G0558 Durio zibethinus HOM05D003424 ORTHO05D004025 7.5e-46 187.2 120 75.8
CARHR167490 Cardamine hirsuta HOM05D003424 ORTHO05D004025 1.3e-45 186.4 118 78.8
QL07p003998 Quercus lobata HOM05D003424 ORTHO05D004025 1.3e-45 186.4 120 75.8
AUR62026108 Chenopodium quinoa HOM05D003424 ORTHO05D004025 1.7e-45 186.0 120 74.2
FAN02G1912 Fragaria x ananassa HOM05D003424 ORTHO05D004025 1.7e-45 186.0 120 77.5
FAN14G2785 Fragaria x ananassa HOM05D003424 ORTHO05D004025 1.7e-45 186.0 120 77.5
Cfa000245 Carpinus fangiana HOM05D003424 ORTHO05D004025 2.8e-45 185.3 120 75.8
Thhalv10005924m.g Eutrema salsugineum HOM05D003424 ORTHO05D004025 2.8e-45 185.3 118 77.1
AUR62024517 Chenopodium quinoa HOM05D003424 ORTHO05D004025 3.7e-45 184.9 120 73.3
Nn2g15108 Nelumbo nucifera HOM05D003424 ORTHO05D004025 3.7e-45 184.9 118 82.2
Psat6g117080 Pisum sativum HOM05D003424 ORTHO05D004025 3.7e-45 184.9 120 75.0
CANSAT80G0981 Cannabis sativa HOM05D003424 ORTHO05D004025 4.8e-45 184.5 120 75.0
CANSAT80G2233 Cannabis sativa HOM05D003424 ORTHO05D004025 4.8e-45 184.5 120 75.0
Peaxi162Scf00069g01214 Petunia axillaris HOM05D003424 ORTHO05D004025 4.8e-45 184.5 120 75.0
Pp3c20_5690 Physcomitrium patens HOM05D003424 ORTHO05D004025 4.8e-45 184.5 119 76.5
Ciclev10004983m.g Citrus clementina HOM05D003424 ORTHO05D004025 6.3e-45 184.1 121 76.0
AT3G57290 Arabidopsis thaliana HOM05D003424 ORTHO05D004025 8.3e-45 183.7 118 76.3
Cfa017072 Carpinus fangiana HOM05D003424 ORTHO05D004025 8.3e-45 183.7 120 75.0
Aa31LG1G23570 Aethionema arabicum HOM05D003424 ORTHO05D004025 1.1e-44 183.3 118 76.3
Haze_21124 Corylus avellana HOM05D003424 ORTHO05D004025 1.1e-44 183.3 120 75.0
Medtr2g079780 Medicago truncatula HOM05D003424 ORTHO05D004025 1.1e-44 183.3 120 74.2
DCAR_020512 Daucus carota HOM05D003424 ORTHO05D004025 1.4e-44 183.0 120 76.7
CAN.G1656.4 Capsicum annuum HOM05D003424 ORTHO05D004025 1.8e-44 182.6 117 76.9
Lj1C1124G13 Lonicera japonica HOM05D003424 ORTHO05D004025 2.4e-44 182.2 120 75.0
Nitab4.5_0000364g0010 Nicotiana tabacum HOM05D003424 ORTHO05D004025 3.1e-44 181.8 117 76.9
EL10Ac3g07146 Beta vulgaris HOM05D003424 ORTHO05D004025 4.1e-44 181.4 120 75.0
Ah.04g164170 Amaranthus hybridus HOM05D003424 ORTHO05D004025 5.4e-44 181.0 120 74.2
Aqoxy2G00237 Aquilegia oxysepala HOM05D003424 ORTHO05D004025 7.0e-44 180.6 120 74.2
Migut.J01716 Erythranthe guttata HOM05D003424 ORTHO05D004025 7.0e-44 180.6 117 76.9
Sp4g23800 Schrenkiella parvula HOM05D003424 ORTHO05D004025 7.0e-44 180.6 118 75.4
Ca_12264_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 9.1e-44 180.3 120 73.3
Ca_30550_v3 Cicer arietinum L. HOM05D003424 ORTHO05D004025 9.1e-44 180.3 120 73.3
Nitab4.5_0000677g0120 Nicotiana tabacum HOM05D003424 ORTHO05D004025 9.1e-44 180.3 117 76.1
MSTRG.6406 Avicennia marina HOM05D003424 ORTHO05D004025 1.6e-43 179.5 117 76.9
Medtr1g051820 Medicago truncatula HOM05D003424 ORTHO05D004025 1.6e-43 179.5 120 74.2
Psat5g246160 Pisum sativum HOM05D003424 ORTHO05D004025 2.0e-43 179.1 117 74.4
SalBow6G0750 Salvia bowleyana HOM05D003424 ORTHO05D004025 2.0e-43 179.1 119 74.8
Rhsim04G0106600 Rhododendron simsii HOM05D003424 ORTHO05D004025 3.5e-43 178.3 148 64.2
Migut.K00104 Erythranthe guttata HOM05D003424 ORTHO05D004025 1.0e-42 176.8 119 72.3
FAN05G4136 Fragaria x ananassa HOM05D003424 ORTHO05D004025 1.7e-42 176.0 143 65.7
PGSC0003DMG400029829 Solanum tuberosum HOM05D003424 ORTHO05D004025 1.9e-41 172.6 119 72.3
TAR633G0793 Trochodendron aralioides HOM05D003424 ORTHO05D004025 1.9e-41 172.6 117 74.4
Solyc10g079880.2 Solanum lycopersicum HOM05D003424 ORTHO05D004025 2.5e-41 172.2 119 71.4
Sopen10g030490 Solanum pennellii HOM05D003424 ORTHO05D004025 2.5e-41 172.2 119 71.4
Manes.03G083338 Manihot esculenta HOM05D003424 ORTHO05D004025 3.2e-41 171.8 108 79.6
Zm00001eb095240 Zea mays HOM05D003424 ORTHO05D004025 4.2e-41 171.4 120 70.8
CBR_g48694 Chara braunii HOM05D003424 ORTHO05D004025 2.1e-40 169.1 120 67.5
Zm00001eb303380 Zea mays HOM05D003424 ORTHO05D004025 1.0e-39 166.8 120 69.2
Os07g0222300 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 1.4e-39 166.4 120 69.2
SGA_v2.0_scaffold105G30370 Striga asiatica HOM05D003424 ORTHO05D004025 1.4e-39 166.4 135 66.7
SMO223G0020 Selaginella moellendorffii HOM05D003424 ORTHO05D004025 4.1e-36 154.8 120 64.2
PSO675G7866 Papaver somniferum HOM05D003424 ORTHO05D004025 1.7e-34 149.4 116 64.7
PSO675G6801 Papaver somniferum HOM05D003424 ORTHO05D004025 1.9e-33 146.0 116 62.1
Nn7g36420 Nelumbo nucifera HOM05D003424 ORTHO05D004025 5.6e-33 144.4 105 77.1
Oeu042058.1 Olea europaea HOM05D002157 ORTHO05D002197 2.2e-29 132.5 135 55.6
Zm00001eb131780 Zea mays HOM05D003424 ORTHO05D004025 2.0e-27 125.9 85 75.3
A06p18120 Brassica napus HOM05D003424 ORTHO05D004025 2.7e-27 125.6 105 63.8
A10p04150 Brassica napus HOM05D003424 ORTHO05D004025 2.7e-27 125.6 105 63.8
BraA04t18461Z Brassica rapa HOM05D003424 ORTHO05D004025 2.7e-27 125.6 105 63.8
Cre12.g498100 Chlamydomonas reinhardtii HOM05D003424 ORTHO05D004025 2.7e-27 125.6 119 51.3
A08p12660 Brassica napus HOM05D003424 ORTHO05D004025 1.0e-26 123.6 105 63.8
Manes.03G083210 Manihot esculenta HOM05D003424 ORTHO05D004025 9.5e-25 117.1 71 80.3
Os07g0167000 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 2.8e-24 115.5 109 58.7
Gohir.A11G309500 Gossypium hirsutum HOM05D003424 ORTHO05D004025 6.2e-24 114.4 71 77.5
HanXRQChr01g0012641 Helianthus annuus HOM05D003424 ORTHO05D004025 2.0e-22 109.4 73 72.6
GSVIVG01005045001 Vitis vinifera HOM05D003424 ORTHO05D004025 2.0e-22 109.4 66 80.3
Cpa.g.sc182.25 Carica papaya HOM05D003424 ORTHO05D004025 2.6e-22 109.0 66 80.3
Os07g0503700 Oryza sativa ssp. japonica HOM05D003424 ORTHO05D004025 2.2e-21 105.9 129 49.6
MCO16G302 Micromonas commoda HOM05D003424 ORTHO05D004025 8.3e-21 104.0 117 44.4
BcaB02g07613 Brassica carinata HOM05D003424 ORTHO05D004025 5.4e-20 101.3 65 78.5
Haze_26473 Corylus avellana HOM05D003424 ORTHO05D004025 7.0e-20 100.9 109 41.3
Cc00_g29150 Coffea canephora HOM05D003424 ORTHO05D004025 7.8e-19 97.4 66 68.2
Cc06_g18160 Coffea canephora HOM05D003424 ORTHO05D004025 7.8e-19 97.4 66 68.2
Cc06_g18170 Coffea canephora HOM05D003424 ORTHO05D004025 7.8e-19 97.4 66 68.2
HanXRQChr12g0369171 Helianthus annuus HOM05D003424 ORTHO05D004025 3.9e-18 95.1 59 76.3
PRCOL_00006598 Prasinoderma coloniale HOM05D003424 ORTHO05D004025 5.0e-18 94.7 104 43.3
BcaC05g25358 Brassica carinata HOM05D000306 ORTHO05D005993 6.6e-18 94.4 105 52.4
BcaC08g43477 Brassica carinata HOM05D000306 ORTHO05D005993 6.6e-18 94.4 105 52.4
C06p08630 Brassica napus HOM05D000306 ORTHO05D005993 6.6e-18 94.4 105 52.4
BolC1t03728H Brassica oleracea HOM05D000306 ORTHO05D005993 6.6e-18 94.4 105 53.3
BraA02t08063Z Brassica rapa HOM05D000306 ORTHO05D005993 6.6e-18 94.4 105 52.4
C05p43000 Brassica napus HOM05D000306 ORTHO05D005993 8.6e-18 94.0 105 52.4
BolC5t33031H Brassica oleracea HOM05D003424 ORTHO05D005993 8.6e-18 94.0 105 52.4
Gorai.007G170700 Gossypium raimondii HOM05D003424 ORTHO05D004025 8.6e-18 94.0 61 73.8
C01p37640 Brassica napus HOM05D000306 ORTHO05D005993 9.5e-17 90.5 105 51.4
Sed0024607 Sechium edule HOM05D003424 ORTHO05D004025 1.1e-15 87.0 79 60.8
BolC2t10025H Brassica oleracea HOM05D003424 ORTHO05D005993 5.2e-15 84.7 98 52.0
Cfa022230 Carpinus fangiana HOM05D003424 ORTHO05D004025 2.6e-14 82.4 116 39.7
Gohir.A09G048100 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.7e-13 79.7 50 76.0
Gohir.A11G217200 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.7e-13 79.7 50 76.0
Gohir.D07G001450 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.7e-13 79.7 50 76.0
Gohir.D07G228450 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.7e-13 79.7 50 76.0
Gohir.D11G130650 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.7e-13 79.7 50 76.0
Gohir.D07G177400 Gossypium hirsutum HOM05D003424 ORTHO05D004025 6.4e-13 77.8 50 74.0
Gohir.D06G106300 Gossypium hirsutum HOM05D003424 ORTHO05D004025 8.3e-13 77.4 50 74.0
Gorai.010G177900 Gossypium raimondii HOM05D003424 ORTHO05D004025 8.3e-13 77.4 50 72.0
TPR.G29633 Trifolium pratense HOM05D003424 ORTHO05D004025 8.3e-13 77.4 54 66.7
Gohir.A09G249400 Gossypium hirsutum HOM05D003424 ORTHO05D004025 1.4e-12 76.6 50 74.0
Psat1g148120 Pisum sativum HOM05D003919 ORTHO05D002405 1.5e-09 66.6 96 42.7
BcaC05g28220 Brassica carinata HOM05D000306 ORTHO05D005993 4.3e-09 65.1 85 47.1
BcaC03g16218 Brassica carinata HOM05D000306 ORTHO05D005993 1.6e-08 63.2 57 59.6
A01p31850 Brassica napus HOM05D001713 ORTHO05D001669 3.6e-08 62.0 54 61.1
Psat4g047240 Pisum sativum HOM05D003424 ORTHO05D004025 3.1e-07 58.9 50 60.0
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 5.2e-07 58.2 36 75.0


User provided reference genes

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