Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 4.5e-169 597.8 297 100.0
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 2.4e-90 336.3 297 60.9
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 3.5e-89 332.4 291 59.8
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.3e-88 330.5 296 57.4
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.8e-85 320.1 278 60.4
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 6.9e-85 318.2 276 62.3
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 2.0e-84 316.6 290 56.6
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 4.5e-84 315.5 270 59.3
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 4.5e-84 315.5 264 62.5
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 3.8e-83 312.4 290 57.2
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 3.8e-83 312.4 270 59.6
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 3.8e-83 312.4 290 57.6
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.4e-82 310.5 296 55.7
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 1.4e-82 310.5 292 57.9
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 3.2e-82 309.3 278 58.6
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 3.2e-82 309.3 270 59.3
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 4.2e-82 308.9 299 57.2
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 4.2e-82 308.9 304 54.6
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 9.3e-82 307.8 278 58.3
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 9.3e-82 307.8 232 65.5
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 2.1e-81 306.6 292 55.5
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 2.1e-81 306.6 299 56.2
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 2.1e-81 306.6 314 52.5
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 1.8e-80 303.5 298 54.0
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 2.3e-80 303.1 301 53.5
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 3.0e-80 302.8 301 53.8
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 3.0e-80 302.8 241 62.2
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.9e-79 300.1 293 55.6
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.9e-79 300.1 260 58.1
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.5e-79 299.7 251 57.4
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.3e-79 299.3 314 53.8
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.3e-79 299.3 260 58.1
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 3.3e-79 299.3 260 57.7
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 7.4e-79 298.1 302 53.6
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 9.6e-79 297.7 279 57.7
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.3e-78 297.4 262 59.2
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 1.6e-78 297.0 262 58.0
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 2.1e-78 296.6 293 54.9
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 2.1e-78 296.6 293 54.9
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 2.1e-78 296.6 293 54.9
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 2.1e-78 296.6 287 57.5
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.7e-78 295.8 300 54.7
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 3.7e-78 295.8 271 57.9
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 4.8e-78 295.4 292 54.8
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 1.1e-77 294.3 283 53.0
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 1.4e-77 293.9 280 56.8
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.4e-77 293.9 262 58.0
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 2.4e-77 293.1 302 52.3
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 2.4e-77 293.1 293 54.6
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 5.3e-77 292.0 250 60.8
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 5.3e-77 292.0 279 56.3
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 6.9e-77 291.6 302 52.3
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 6.9e-77 291.6 293 54.3
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 9.0e-77 291.2 266 54.9
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 1.2e-76 290.8 235 63.0
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 2.6e-76 289.7 282 53.2
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 4.5e-76 288.9 298 51.7
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 4.5e-76 288.9 274 56.2
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.8e-76 288.5 274 55.5
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 5.8e-76 288.5 298 53.7
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 5.8e-76 288.5 306 53.6
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 7.6e-76 288.1 274 55.1
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 7.6e-76 288.1 290 56.6
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.3e-75 287.3 262 59.5
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 2.2e-75 286.6 286 53.1
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 3.8e-75 285.8 262 57.3
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.9e-75 285.4 310 50.3
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 4.9e-75 285.4 273 56.0
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 1.4e-74 283.9 238 58.4
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.4e-74 283.9 288 54.2
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.9e-74 283.5 274 54.4
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 3.2e-74 282.7 266 57.9
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.2e-74 282.7 295 52.5
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 4.2e-74 282.3 266 56.8
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 7.1e-74 281.6 269 53.5
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 7.1e-74 281.6 255 58.4
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 1.6e-73 280.4 270 54.1
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 2.1e-73 280.0 267 55.4
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 3.5e-73 279.3 226 61.9
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 3.5e-73 279.3 303 51.2
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 6.0e-73 278.5 230 61.3
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 6.0e-73 278.5 236 57.6
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 1.0e-72 277.7 259 58.7
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 1.0e-72 277.7 259 58.7
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 6.7e-72 275.0 278 54.0
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 6.7e-72 275.0 278 54.0
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 6.7e-72 275.0 278 54.0
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.5e-71 273.9 322 48.4
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 5.7e-71 271.9 278 54.0
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 6.3e-70 268.5 300 50.7
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 1.1e-69 267.7 293 50.2
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 2.9e-67 259.6 290 50.7
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 2.5e-66 256.5 238 55.0
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 6.1e-65 251.9 243 58.4
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.8e-64 250.4 264 51.1
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 5.1e-64 248.8 266 51.1
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 1.1e-63 247.7 213 59.2
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 1.5e-63 247.3 260 51.9
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 2.8e-62 243.0 300 48.7
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 1.4e-61 240.7 272 49.3
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.4e-61 240.0 292 49.0
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.5e-60 235.7 277 48.4
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.1e-58 231.1 230 52.2
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 7.2e-58 228.4 208 58.7
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 4.7e-57 225.7 247 51.0
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.4e-56 224.2 205 58.5
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 8.8e-56 221.5 214 55.6
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 8.2e-54 214.9 233 48.5
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 3.1e-53 213.0 443 33.9
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 4.1e-53 212.6 264 45.5
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 5.2e-48 195.7 191 55.5
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.6e-47 193.4 231 44.2
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 1.0e-43 181.4 166 61.4
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.2e-41 174.5 155 58.1
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 2.2e-38 163.7 159 54.7
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 5.9e-36 155.6 148 52.0
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.0e-35 154.8 144 57.6
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 3.6e-33 146.4 135 55.6
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 6.1e-33 145.6 115 61.7
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 1.4e-32 144.4 230 39.1
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 8.8e-32 141.7 134 58.2
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 1.5e-31 141.0 118 58.5
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.8e-30 136.7 88 69.3
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 9.1e-29 131.7 107 57.9
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 1.5e-26 124.4 74 70.3
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 5.5e-26 122.5 85 67.1
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.3e-24 117.1 65 80.0
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.3e-22 111.3 69 71.0
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-22 111.3 69 71.0
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-22 111.3 69 71.0
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 5.6e-18 95.9 85 61.2
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 8.0e-17 92.0 81 63.0
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 2.4e-13 80.5 49 73.5
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 4.1e-13 79.7 52 61.5
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 5.4e-13 79.3 70 55.7
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 4.6e-12 76.3 44 75.0
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 1.0e-11 75.1 70 55.7
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 1.0e-11 75.1 59 59.3
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 6.6e-11 72.4 46 63.0
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 9.5e-10 68.6 132 37.1
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 2.8e-09 67.0 67 50.7
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.9e-08 62.0 166 28.3
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 1.5e-07 61.2 106 39.6
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 2.6e-07 60.5 179 27.4


User provided reference genes

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