Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 0.0e+00 1842.0 965 100.0
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 0.0e+00 1423.3 976 79.6
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 3.7e-55 221.1 1042 28.6
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.2e-53 216.1 584 30.7
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.6e-53 215.7 1076 27.5
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.6e-50 205.7 1005 27.5
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.7e-47 195.7 947 27.6
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 8.6e-44 183.3 1079 25.9
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 2.8e-42 178.3 726 28.4
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.8e-42 178.3 470 31.5
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.2e-40 172.9 1133 26.2
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 9.8e-40 169.9 1003 26.3
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.7e-39 169.1 712 28.8
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 4.9e-39 167.5 611 28.5
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.1e-38 166.4 571 29.2
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.4e-38 166.0 662 29.3
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.4e-38 165.2 511 32.7
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 2.7e-37 161.8 599 28.5
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 6.0e-37 160.6 851 26.9
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 7.8e-37 160.2 723 29.2
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 7.8e-37 160.2 600 28.3
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 3.0e-36 158.3 609 27.9
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 3.0e-36 158.3 599 29.0
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 3.0e-36 158.3 956 26.9
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 3.9e-36 157.9 1002 28.3
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 3.9e-36 157.9 603 28.0
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 6.6e-36 157.1 630 28.4
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.1e-35 156.4 601 28.8
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.5e-35 156.0 732 26.4
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 4.3e-35 154.5 593 28.0
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 5.6e-35 154.1 620 28.7
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 5.6e-35 154.1 664 28.6
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 7.3e-35 153.7 731 28.6
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 9.5e-35 153.3 645 29.1
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 9.5e-35 153.3 803 25.5
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.2e-34 152.9 547 30.0
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.2e-34 152.9 680 28.2
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 1.6e-34 152.5 655 28.1
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.1e-34 152.1 661 28.6
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.8e-34 151.8 602 26.9
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.1e-34 150.2 601 27.0
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 8.1e-34 150.2 957 26.5
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 8.1e-34 150.2 545 31.2
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.1e-33 149.8 602 26.7
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.1e-33 149.8 605 26.6
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.1e-33 149.8 681 28.9
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 1.8e-33 149.1 679 28.0
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.8e-33 149.1 752 28.7
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.3e-33 148.7 601 26.6
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 6.8e-33 147.1 649 26.5
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.8e-33 147.1 601 26.5
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 6.8e-33 147.1 683 28.7
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.9e-33 146.7 672 28.4
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 2.0e-32 145.6 689 27.9
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 2.0e-32 145.6 599 27.4
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 3.4e-32 144.8 679 28.0
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 5.8e-32 144.1 592 27.2
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 9.9e-32 143.3 458 31.0
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 9.9e-32 143.3 487 28.7
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.3e-31 142.9 821 27.8
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.7e-31 142.5 666 26.9
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 8.4e-31 140.2 598 26.9
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 8.4e-31 140.2 1171 24.1
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 8.4e-31 140.2 731 25.2
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 8.4e-31 140.2 700 26.7
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.4e-30 139.4 596 26.0
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.9e-30 139.0 599 30.6
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 2.4e-30 138.7 603 26.9
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 3.2e-30 138.3 715 25.6
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.1e-30 137.9 474 31.0
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 5.4e-30 137.5 666 26.9
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 9.2e-30 136.7 896 24.9
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 9.2e-30 136.7 513 28.8
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.2e-29 136.3 440 28.9
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.2e-29 136.3 799 26.3
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 6.0e-29 134.0 513 27.5
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 6.0e-29 134.0 596 26.2
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 7.8e-29 133.7 694 26.2
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.0e-28 133.3 667 26.4
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.7e-28 132.5 905 25.1
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.3e-28 132.1 600 26.2
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 3.0e-28 131.7 789 26.9
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 3.0e-28 131.7 862 26.3
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 5.1e-28 131.0 669 26.3
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 6.6e-28 130.6 455 27.5
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 8.6e-28 130.2 786 26.0
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 1.1e-27 129.8 799 26.0
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.5e-27 129.4 627 27.1
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.9e-27 129.0 514 27.8
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 4.3e-27 127.9 668 26.6
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 4.3e-27 127.9 582 26.5
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 4.3e-27 127.9 818 24.6
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 9.6e-27 126.7 694 26.8
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.2e-26 126.3 458 28.6
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.2e-26 126.3 947 25.7
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.6e-26 125.9 595 28.1
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 2.8e-26 125.2 576 28.3
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 2.8e-26 125.2 526 28.5
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 8.1e-26 123.6 795 24.4
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 8.1e-26 123.6 795 24.4
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 8.1e-26 123.6 599 25.7
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 8.1e-26 123.6 665 26.8
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 1.8e-25 122.5 600 27.0
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 5.2e-25 120.9 768 25.7
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 6.8e-25 120.6 664 27.4
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 8.9e-25 120.2 515 28.0
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 8.9e-25 120.2 655 24.4
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.5e-24 119.4 678 24.2
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 1.5e-24 119.4 646 27.6
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 2.0e-24 119.0 844 24.1
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 3.4e-24 118.2 611 26.4
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 3.4e-24 118.2 679 25.8
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 4.4e-24 117.9 669 24.2
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 7.6e-24 117.1 822 25.9
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 9.9e-24 116.7 384 27.9
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 9.9e-24 116.7 661 27.7
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 8.4e-23 113.6 1013 22.9
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.1e-22 113.2 491 27.1
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.1e-22 113.2 784 25.9
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 1.4e-22 112.8 733 25.4
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 1.4e-22 112.8 768 25.4
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 7.1e-22 110.5 640 26.9
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 1.2e-21 109.8 640 26.6
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.1e-21 109.0 531 27.1
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 2.7e-21 108.6 595 27.7
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 6.0e-21 107.5 712 25.6
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.3e-20 106.3 606 26.7
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.3e-20 106.3 686 25.4
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.3e-20 106.3 601 25.8
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 1.3e-20 106.3 262 30.9
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 1.7e-20 105.9 781 24.1
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 3.0e-20 105.1 685 25.3
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 3.0e-20 105.1 624 25.3
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 5.1e-20 104.4 670 23.7
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 6.6e-20 104.0 611 24.4
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.5e-19 102.8 643 26.7
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.9e-19 102.4 579 24.9
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.9e-19 102.4 637 25.6
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.5e-19 102.1 231 33.8
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 7.3e-19 100.5 585 24.8
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 9.6e-19 100.1 642 25.7
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 9.6e-19 100.1 231 32.9
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.6e-18 99.4 620 25.8
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 7.6e-16 90.5 395 28.6
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 3.8e-15 88.2 605 24.3
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 8.4e-15 87.0 642 25.4
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 1.8e-12 79.3 437 27.7
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 6.7e-12 77.4 763 22.8
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.8e-10 72.0 563 24.0
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 8.1e-10 70.5 484 26.0
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 3.8e-07 61.6 696 22.4
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 9.3e-06 57.0 1112 22.2


User provided reference genes

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