Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 9.9e-203 709.9 362 100.0
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 1.1e-113 414.1 325 67.4
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 1.5e-113 413.7 349 63.3
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 3.3e-113 412.5 344 66.0
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 5.6e-113 411.8 365 61.9
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 9.5e-113 411.0 322 66.8
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 1.2e-112 410.6 322 67.1
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 1.6e-112 410.2 319 67.4
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 6.2e-112 408.3 357 61.9
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 6.2e-112 408.3 315 68.3
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 3.1e-111 406.0 368 62.2
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 1.2e-110 404.1 317 66.6
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 5.8e-110 401.7 315 67.6
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 1.3e-109 400.6 322 64.9
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.7e-109 400.2 317 67.8
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 1.7e-109 400.2 325 66.2
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 2.2e-109 399.8 315 67.0
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 4.9e-109 398.7 330 65.2
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 8.3e-109 397.9 348 62.1
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 8.3e-109 397.9 312 68.3
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.1e-108 397.5 315 67.0
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 1.1e-108 397.5 310 68.1
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 1.1e-108 397.5 320 65.3
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.9e-108 396.7 316 65.8
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.9e-108 396.7 322 64.6
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 2.4e-108 396.4 317 66.6
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 3.5e-107 392.5 325 65.2
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 6.0e-107 391.7 315 66.0
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 1.0e-106 391.0 317 65.6
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 1.3e-106 390.6 325 64.6
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 1.3e-106 390.6 318 64.5
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 2.3e-106 389.8 331 60.4
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 3.9e-106 389.0 320 63.8
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 3.9e-106 389.0 320 63.1
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 3.9e-106 389.0 361 58.7
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 5.1e-106 388.7 324 63.9
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 6.6e-106 388.3 326 64.1
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 1.1e-105 387.5 317 65.0
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 4.3e-105 385.6 311 66.2
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 4.3e-105 385.6 320 64.1
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 4.3e-105 385.6 337 60.2
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 2.8e-104 382.9 319 63.0
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 2.8e-104 382.9 317 63.7
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 3.6e-104 382.5 320 62.5
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 6.2e-104 381.7 364 59.1
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 1.1e-103 380.9 316 62.7
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 1.4e-103 380.6 320 60.9
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 1.8e-103 380.2 318 61.6
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 5.2e-103 378.6 315 63.5
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 6.8e-103 378.3 323 61.9
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 1.2e-102 377.5 314 61.8
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 1.5e-102 377.1 317 61.5
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 2.0e-102 376.7 315 62.9
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 7.6e-102 374.8 315 62.9
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 7.6e-102 374.8 319 61.4
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 9.9e-102 374.4 314 63.1
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 9.9e-102 374.4 315 62.5
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 6.4e-101 371.7 317 61.2
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 8.4e-101 371.3 321 62.0
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 1.4e-100 370.5 341 60.4
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 2.4e-100 369.8 310 63.5
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 7.1e-100 368.2 325 62.2
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 9.2e-100 367.9 314 61.5
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 4.6e-99 365.5 352 59.7
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 6.0e-99 365.2 364 57.4
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 1.0e-98 364.4 364 57.7
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 1.3e-98 364.0 373 54.4
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 1.7e-98 363.6 323 61.9
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 2.3e-98 363.2 292 64.4
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 1.1e-97 360.9 330 58.5
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 1.8e-95 353.6 319 61.1
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 2.0e-94 350.1 287 63.8
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 1.3e-93 347.4 286 66.4
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 8.4e-93 344.7 314 61.1
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 4.2e-92 342.4 330 58.8
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 6.0e-91 338.6 313 59.7
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 4.3e-89 332.4 313 58.5
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 3.1e-87 326.2 288 60.4
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 2.0e-86 323.6 322 56.8
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 7.1e-84 315.1 313 55.0
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 2.1e-80 303.5 335 53.7
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 2.8e-80 303.1 259 62.9
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 5.3e-79 298.9 197 76.6
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 1.5e-78 297.4 318 53.1
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 2.0e-78 297.0 309 55.7
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 1.3e-77 294.3 323 49.8
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.6e-75 287.3 318 51.9
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 2.1e-75 287.0 330 53.6
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 2.7e-75 286.6 325 52.0
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 6.0e-75 285.4 300 51.3
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 1.0e-74 284.6 318 51.9
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 3.9e-74 282.7 241 65.1
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 3.9e-74 282.7 330 51.5
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 7.6e-70 268.5 198 67.7
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.8e-69 266.2 335 45.1
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 1.1e-68 264.6 330 47.6
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 9.3e-68 261.5 260 56.2
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.5e-67 259.6 291 48.8
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 4.6e-67 259.2 291 48.8
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 7.6e-62 241.9 291 47.4
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 6.1e-59 232.3 232 56.9
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 6.7e-58 228.8 199 62.8
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 2.2e-56 223.8 233 53.2
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 1.2e-54 218.0 287 48.4
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 7.4e-49 198.7 192 56.2
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.2e-43 181.4 114 81.6
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.5e-41 174.5 135 66.7
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 3.3e-41 173.3 146 63.7
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-36 157.9 211 47.4
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 3.0e-34 150.2 210 45.7
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 2.6e-33 147.1 188 47.3
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 2.2e-29 134.0 225 42.2
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 6.5e-29 132.5 214 43.0
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-28 131.3 212 42.0
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 1.2e-27 128.3 278 31.3
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 4.0e-26 123.2 215 39.5
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 4.0e-26 123.2 106 58.5
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 6.8e-26 122.5 137 53.3
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 8.3e-24 115.5 72 73.6
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 1.2e-22 111.7 79 74.7
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 1.6e-22 111.3 75 72.0
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 2.0e-22 110.9 73 75.3
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 5.9e-22 109.4 311 28.6
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 7.7e-22 109.0 90 60.0
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 1.7e-21 107.8 68 75.0
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.5e-20 104.8 73 68.5
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 8.9e-18 95.5 280 26.4
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 1.4e-15 88.2 61 72.1
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 2.0e-14 84.3 151 39.1
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 1.7e-13 81.3 69 62.3
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 6.6e-13 79.3 130 36.9
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 1.1e-12 78.6 78 53.8
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 2.6e-09 67.4 38 81.6
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 3.7e-08 63.5 57 57.9
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 5.4e-07 59.7 63 52.4
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 5.4e-07 59.7 35 74.3
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 5.4e-07 59.7 140 30.7
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 1.6e-06 58.2 40 72.5


User provided reference genes

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