Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.3e-122 442.2 218 100.0
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.3e-61 240.4 143 83.9
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 4.3e-36 155.6 199 46.2
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 2.2e-32 143.3 207 47.8
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 2.1e-30 136.7 218 44.0
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 2.7e-30 136.3 202 43.6
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 1.4e-29 134.0 209 42.1
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 2.6e-28 129.8 215 43.3
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 3.3e-28 129.4 215 43.3
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 5.7e-28 128.6 194 44.8
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 3.7e-27 125.9 220 41.8
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 9.1e-26 121.3 189 44.4
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 9.1e-26 121.3 229 40.2
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 1.2e-25 120.9 230 39.6
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 1.5e-25 120.6 203 39.9
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.5e-25 120.6 211 41.2
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.6e-25 119.8 210 40.0
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 4.5e-25 119.0 203 43.3
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 4.5e-25 119.0 219 41.1
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 4.5e-25 119.0 188 45.2
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 5.9e-25 118.6 225 40.9
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 7.7e-25 118.2 178 41.0
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.7e-25 118.2 188 45.2
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 7.7e-25 118.2 201 43.8
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 7.7e-25 118.2 224 41.1
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 1.0e-24 117.9 237 39.2
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.7e-24 117.1 232 36.6
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 1.7e-24 117.1 212 42.5
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 2.2e-24 116.7 220 40.9
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.2e-24 116.7 223 37.7
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 2.9e-24 116.3 212 40.6
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 2.9e-24 116.3 217 39.6
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 5.0e-24 115.5 240 40.8
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 5.0e-24 115.5 254 37.4
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 6.5e-24 115.2 225 42.7
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 8.5e-24 114.8 239 38.1
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 1.1e-23 114.4 201 39.8
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.4e-23 114.0 215 41.4
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.4e-23 114.0 212 41.5
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.4e-23 114.0 190 44.2
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 1.9e-23 113.6 209 38.8
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 4.2e-23 112.5 244 36.9
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 7.2e-23 111.7 222 39.6
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 9.4e-23 111.3 174 40.2
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 1.6e-22 110.5 234 39.3
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 2.1e-22 110.2 230 37.4
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 2.1e-22 110.2 226 37.6
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 2.1e-22 110.2 258 38.0
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 2.1e-22 110.2 202 40.1
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 4.7e-22 109.0 207 39.1
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 6.1e-22 108.6 193 42.5
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 7.9e-22 108.2 191 43.5
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 7.9e-22 108.2 247 36.8
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.0e-21 107.8 206 39.8
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 1.8e-21 107.1 217 37.3
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.8e-21 107.1 203 37.9
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.8e-21 107.1 203 38.4
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.3e-21 106.7 164 45.1
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 2.3e-21 106.7 261 38.3
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 3.0e-21 106.3 214 37.9
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 3.0e-21 106.3 213 37.1
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.9e-21 105.9 202 37.6
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 3.9e-21 105.9 203 37.4
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 5.2e-21 105.5 207 37.2
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 6.7e-21 105.1 207 38.2
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 8.8e-21 104.8 235 38.3
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.1e-20 104.4 232 38.8
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.1e-20 104.4 227 37.9
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 2.0e-20 103.6 210 41.0
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 2.6e-20 103.2 224 36.2
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 3.3e-20 102.8 230 38.7
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 3.3e-20 102.8 219 37.9
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 9.7e-20 101.3 245 33.5
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 9.7e-20 101.3 229 38.4
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 9.7e-20 101.3 229 38.0
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.3e-19 100.9 235 38.3
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.2e-19 100.1 229 38.0
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 3.7e-19 99.4 235 36.6
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 6.3e-19 98.6 234 37.6
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 6.3e-19 98.6 220 37.3
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 8.2e-19 98.2 212 39.2
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.1e-18 97.8 203 38.4
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.4e-18 97.4 181 42.0
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 1.8e-18 97.1 232 36.2
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 2.4e-18 96.7 220 37.3
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 2.4e-18 96.7 231 35.1
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.1e-18 96.3 199 35.7
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 5.3e-18 95.5 198 35.9
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 9.1e-18 94.7 220 35.0
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 1.6e-17 94.0 200 37.0
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.5e-17 92.8 202 37.6
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 4.5e-17 92.4 163 44.2
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 5.9e-17 92.0 234 32.1
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 7.7e-17 91.7 192 37.0
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 1.0e-16 91.3 224 36.6
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 1.0e-16 91.3 134 47.0
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 1.3e-16 90.9 116 46.6
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.3e-16 90.9 146 39.7
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 1.7e-16 90.5 216 38.4
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 1.7e-16 90.5 216 38.4
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.7e-16 90.5 148 43.9
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 2.2e-16 90.1 255 33.7
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.2e-16 90.1 201 37.3
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 5.0e-16 89.0 214 35.0
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 5.0e-16 89.0 217 38.2
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 5.0e-16 89.0 217 38.2
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 6.5e-16 88.6 214 35.0
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 6.5e-16 88.6 214 35.0
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 8.5e-16 88.2 201 36.8
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 8.5e-16 88.2 220 35.5
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 1.1e-15 87.8 217 38.2
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.5e-15 87.4 228 34.6
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.9e-15 87.0 249 33.3
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 2.5e-15 86.7 216 38.0
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 2.5e-15 86.7 269 30.1
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 4.2e-15 85.9 218 36.2
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 4.2e-15 85.9 210 35.2
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 1.2e-14 84.3 230 35.2
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.6e-14 84.0 212 34.4
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 1.6e-14 84.0 227 34.4
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 2.7e-14 83.2 169 41.4
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 4.7e-14 82.4 154 42.2
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 4.7e-14 82.4 132 41.7
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.0e-13 81.3 170 36.5
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 1.4e-13 80.9 180 40.0
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.4e-13 80.9 256 36.3
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 1.8e-13 80.5 198 37.4
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 2.3e-13 80.1 218 33.5
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 3.0e-13 79.7 134 38.8
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 4.0e-13 79.3 127 43.3
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 5.2e-13 79.0 227 36.1
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 8.8e-13 78.2 192 37.5
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 1.2e-12 77.8 205 34.6
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.2e-12 77.8 152 40.1
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 1.5e-12 77.4 172 34.9
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 2.0e-12 77.0 124 42.7
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 2.6e-12 76.6 136 42.6
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 2.6e-12 76.6 133 42.1
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 2.6e-12 76.6 136 42.6
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 2.6e-12 76.6 136 42.6
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 2.6e-12 76.6 133 42.1
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 3.3e-12 76.3 152 38.2
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 3.3e-12 76.3 146 40.4
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 4.4e-12 75.9 162 35.2
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 5.7e-12 75.5 244 30.3
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 1.7e-11 73.9 211 30.3
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 4.8e-11 72.4 73 54.8
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 4.8e-11 72.4 119 45.4
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 8.2e-11 71.6 154 36.4
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.1e-10 71.2 148 38.5
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.1e-10 69.7 184 32.6
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 5.3e-10 68.9 144 38.2
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 3.5e-09 66.2 201 35.3
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 3.8e-08 62.8 200 32.5
Zm00001eb093500 Zea mays HOM05D015271 ORTHO05D004907 8.5e-08 61.6 151 33.1
Os03g0320600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 1.1e-07 61.2 116 42.2
Zm00001eb405310 Zea mays HOM05D015271 ORTHO05D004907 2.5e-07 60.1 116 38.8
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 9.4e-07 58.2 95 46.3
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.2e-06 57.8 133 33.8
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 1.6e-06 57.4 113 35.4
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 8.0e-06 55.1 78 43.6


User provided reference genes

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