Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G1045 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 4.1e-75 284.6 146 100.0
TAR365G1138 Trochodendron aralioides HOM05D002889 ORTHO05D003366 7.0e-22 107.8 151 45.7
PSO764G0331 Papaver somniferum HOM05D002889 ORTHO05D003366 1.2e-21 107.1 151 47.0
Eucgr.K03590 Eucalyptus grandis HOM05D002889 ORTHO05D003366 1.1e-19 100.5 151 44.4
PSO170G4103 Papaver somniferum HOM05D002889 ORTHO05D003366 1.1e-19 100.5 146 46.6
Nn3g19858 Nelumbo nucifera HOM05D002889 ORTHO05D003366 2.5e-19 99.4 151 43.0
MBI10_g16806_MAGBIO Magnolia biondii HOM05D002889 ORTHO05D003366 4.2e-19 98.6 151 42.4
Manes.12G044400 Manihot esculenta HOM05D002889 ORTHO05D003366 2.7e-18 95.9 151 41.1
Cpa.g.sc8.204 Carica papaya HOM05D002889 ORTHO05D003366 3.6e-18 95.5 146 41.8
Nn1g03087 Nelumbo nucifera HOM05D002889 ORTHO05D003366 8.0e-18 94.4 150 44.7
arahy.Tifrunner.gnm1.ann1.EIAU9G Arachis hypogaea HOM05D002889 ORTHO05D003366 1.1e-16 90.5 150 41.3
arahy.Tifrunner.gnm1.ann1.PFSA3S Arachis hypogaea HOM05D002889 ORTHO05D003366 1.5e-16 90.1 150 40.7
Manes.13G042800 Manihot esculenta HOM05D002889 ORTHO05D003366 5.7e-16 88.2 151 40.4
TAR362G1318 Trochodendron aralioides HOM05D002889 ORTHO05D003366 9.7e-16 87.4 152 40.1
ATR0787G124 Amborella trichopoda HOM05D002889 ORTHO05D003366 3.7e-15 85.5 159 42.1
Duzib138G1300 Durio zibethinus HOM05D002889 ORTHO05D003366 4.8e-15 85.1 147 41.5
Gohir.A08G192800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 6.3e-15 84.7 148 40.5
FAN15G1177 Fragaria x ananassa HOM05D002889 ORTHO05D003366 8.2e-15 84.3 151 39.7
FAN27G1075 Fragaria x ananassa HOM05D002889 ORTHO05D003366 8.2e-15 84.3 151 39.1
FvH4_2g19850 Fragaria vesca HOM05D002889 ORTHO05D003366 1.8e-14 83.2 151 38.4
CSS0022688 Camellia sinensis var. sinensis HOM05D002889 ORTHO05D003366 3.1e-14 82.4 150 38.7
MD10G1170900 Malus domestica HOM05D002889 ORTHO05D003366 3.1e-14 82.4 150 40.7
FAN24G0698 Fragaria x ananassa HOM05D002889 ORTHO05D003366 5.3e-14 81.6 151 37.7
Gohir.D08G210800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.3e-14 81.6 148 39.2
CiPaw.03G153400 Carya illinoinensis HOM05D002889 ORTHO05D003366 7.0e-14 81.3 145 40.7
Prupe.8G209400 Prunus persica HOM05D002889 ORTHO05D003366 7.0e-14 81.3 141 41.8
PGR044G2403 Punica granatum HOM05D002889 ORTHO05D003366 7.0e-14 81.3 149 39.6
Thecc.01G236600 Theobroma cacao HOM05D002889 ORTHO05D003366 7.0e-14 81.3 148 39.2
Gorai.004G223500 Gossypium raimondii HOM05D002889 ORTHO05D003366 9.1e-14 80.9 148 39.2
MELO3C024150.2 Cucumis melo HOM05D002889 ORTHO05D003366 1.6e-13 80.1 152 40.8
Potri.002G253200 Populus trichocarpa HOM05D002889 ORTHO05D003366 2.0e-13 79.7 147 36.7
Ciclev10018498m.g Citrus clementina HOM05D002889 ORTHO05D003366 2.6e-13 79.3 148 39.9
SalBow6G0687 Salvia bowleyana HOM05D002889 ORTHO05D003366 2.6e-13 79.3 149 40.9
QL09p043970 Quercus lobata HOM05D002889 ORTHO05D003366 3.5e-13 79.0 145 40.0
Sabra02G0192400 Salix brachista HOM05D002889 ORTHO05D003366 4.5e-13 78.6 148 37.2
AUR62008857 Chenopodium quinoa HOM05D002889 ORTHO05D003366 7.7e-13 77.8 152 36.8
ClCG09G009410 Citrullus lanatus HOM05D002889 ORTHO05D003366 7.7e-13 77.8 152 39.5
Migut.N02247 Erythranthe guttata HOM05D002889 ORTHO05D003366 7.7e-13 77.8 149 39.6
Glyma.19G171200 Glycine max HOM05D002889 ORTHO05D003366 7.7e-13 77.8 150 38.7
CiPaw.04G108600 Carya illinoinensis HOM05D002889 ORTHO05D003366 1.0e-12 77.4 145 41.4
CsaV3_7G025450 Cucumis sativus L. HOM05D002889 ORTHO05D003366 1.0e-12 77.4 152 39.5
A09p12740 Brassica napus HOM05D002889 ORTHO05D003366 1.3e-12 77.0 152 37.5
MD05G1182800 Malus domestica HOM05D002889 ORTHO05D003366 1.3e-12 77.0 150 38.7
Dinv43034 Davidia involucrata HOM05D002889 ORTHO05D003366 2.9e-12 75.9 151 37.7
Gohir.D07G160200 Gossypium hirsutum HOM05D002889 ORTHO05D003366 2.9e-12 75.9 148 40.5
RcHm_v2.0_Chr6g0285551 Rosa chinensis HOM05D002889 ORTHO05D003366 2.9e-12 75.9 151 36.4
Zm00001eb426220 Zea mays HOM05D002889 ORTHO05D003366 3.8e-12 75.5 150 37.3
Haze_24745 Corylus avellana HOM05D002889 ORTHO05D003366 5.0e-12 75.1 145 37.2
Lj1A81G48 Lonicera japonica HOM05D002889 ORTHO05D003366 5.0e-12 75.1 150 39.3
vmacro14772 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 5.0e-12 75.1 152 35.5
AL3G47890 Arabidopsis lyrata HOM05D002889 ORTHO05D003366 6.5e-12 74.7 149 36.9
Gorai.001G183300 Gossypium raimondii HOM05D002889 ORTHO05D003366 8.5e-12 74.3 148 39.9
EL10Ac7g17762 Beta vulgaris HOM05D002889 ORTHO05D003366 1.1e-11 73.9 146 39.7
AUR62025387 Chenopodium quinoa HOM05D002889 ORTHO05D003366 1.1e-11 73.9 152 38.2
THA.LOC104820061 Tarenaya hassleriana HOM05D002889 ORTHO05D003366 1.1e-11 73.9 149 36.2
Lj1g0020070 Lotus japonicus HOM05D002889 ORTHO05D003366 1.5e-11 73.6 153 35.9
TWI59G1284 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 1.9e-11 73.2 152 36.8
MSTRG.17535 Avicennia marina HOM05D002889 ORTHO05D003366 2.5e-11 72.8 152 36.2
BcaNung04093 Brassica carinata HOM05D002889 ORTHO05D003366 2.5e-11 72.8 150 36.0
Duzib133G1137 Durio zibethinus HOM05D002889 ORTHO05D003366 2.5e-11 72.8 148 40.5
Gohir.A07G202300 Gossypium hirsutum HOM05D002889 ORTHO05D003366 2.5e-11 72.8 143 38.5
Gohir.D07G208500 Gossypium hirsutum HOM05D002889 ORTHO05D003366 2.5e-11 72.8 143 37.8
Glyma.03G170000 Glycine max HOM05D002889 ORTHO05D003366 3.2e-11 72.4 146 35.6
unitig_899.g15235 Utricularia gibba HOM05D002889 ORTHO05D003366 3.2e-11 72.4 148 39.2
Cfa002518 Carpinus fangiana HOM05D002889 ORTHO05D003366 4.2e-11 72.0 145 36.6
Phvul.001G168400 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 4.2e-11 72.0 150 36.0
Sed0016475 Sechium edule HOM05D002889 ORTHO05D003366 4.2e-11 72.0 150 34.7
VMungo1383G1051 Vigna mungo HOM05D002889 ORTHO05D003366 4.2e-11 72.0 150 36.7
Gohir.A07G154000 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.5e-11 71.6 148 39.9
CAN.G941.45 Capsicum annuum HOM05D002889 ORTHO05D003366 7.2e-11 71.2 149 36.2
Cc01_g17450 Coffea canephora HOM05D002889 ORTHO05D003366 7.2e-11 71.2 148 34.5
Glyma.10G042600 Glycine max HOM05D002889 ORTHO05D003366 7.2e-11 71.2 151 37.1
Gorai.001G235400 Gossypium raimondii HOM05D002889 ORTHO05D003366 9.4e-11 70.9 143 37.1
VMungo0720G0228 Vigna mungo HOM05D002889 ORTHO05D003366 9.4e-11 70.9 152 38.2
MSTRG.12505 Avicennia marina HOM05D002889 ORTHO05D003366 1.2e-10 70.5 138 37.0
Ca_08769_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 1.2e-10 70.5 151 36.4
TPR.G35800 Trifolium pratense HOM05D002889 ORTHO05D003366 1.2e-10 70.5 145 37.2
TPR.G7556 Trifolium pratense HOM05D002889 ORTHO05D003366 1.2e-10 70.5 150 36.0
Carub.0003s3449 Capsella rubella HOM05D002889 ORTHO05D003366 1.6e-10 70.1 149 35.6
Ca_09624_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 1.6e-10 70.1 153 37.9
Dinv19241 Davidia involucrata HOM05D002889 ORTHO05D003366 1.6e-10 70.1 151 35.8
Lalb_Chr25g0289711 Lupinus albus HOM05D002889 ORTHO05D003366 1.6e-10 70.1 145 36.6
Peaxi162Scf00499g00610 Petunia axillaris HOM05D002889 ORTHO05D003366 1.6e-10 70.1 149 36.9
Lalb_Chr02g0152941 Lupinus albus HOM05D002889 ORTHO05D003366 2.1e-10 69.7 151 37.1
Nitab4.5_0000813g0100 Nicotiana tabacum HOM05D002889 ORTHO05D003366 2.1e-10 69.7 145 34.5
AT2G20190 Arabidopsis thaliana HOM05D002889 ORTHO05D003366 2.7e-10 69.3 150 34.7
HanXRQChr13g0409041 Helianthus annuus HOM05D002889 ORTHO05D003366 2.7e-10 69.3 150 35.3
Lj5g0008167 Lotus japonicus HOM05D002889 ORTHO05D003366 3.6e-10 68.9 150 34.0
Psat3g050160 Pisum sativum HOM05D002889 ORTHO05D003366 4.7e-10 68.6 151 35.1
Sc05g0002470 Simmondsia chinensis HOM05D002889 ORTHO05D003366 4.7e-10 68.6 150 36.0
TWI14G1217 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 4.7e-10 68.6 153 37.3
Atru.chr5.1927 Acer truncatum HOM05D002889 ORTHO05D003366 6.1e-10 68.2 135 39.3
Nitab4.5_0024802g0010 Nicotiana tabacum HOM05D002889 ORTHO05D003366 6.1e-10 68.2 147 34.7
Solyc09g063030.4 Solanum lycopersicum HOM05D002889 ORTHO05D003366 6.1e-10 68.2 149 34.2
Sopen09g025200 Solanum pennellii HOM05D002889 ORTHO05D003366 6.1e-10 68.2 149 34.2
Phvul.007G156100 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 8.0e-10 67.8 152 37.5
Hund18347 Selenicereus undatus HOM05D002889 ORTHO05D003366 8.0e-10 67.8 151 35.1
TWI23G0798 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 1.0e-09 67.4 152 34.9
vmacro02730 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 1.0e-09 67.4 151 34.4
Ah.08g213900 Amaranthus hybridus HOM05D002889 ORTHO05D003366 1.8e-09 66.6 152 34.2
ECA236G1707 Erigeron canadensis HOM05D002889 ORTHO05D003366 1.8e-09 66.6 150 36.7
Medtr1g069165 Medicago truncatula HOM05D002889 ORTHO05D003366 1.8e-09 66.6 134 37.3
Psat6g064880 Pisum sativum HOM05D002889 ORTHO05D003366 2.3e-09 66.2 164 35.4
Aa31LG8G17120 Aethionema arabicum HOM05D002889 ORTHO05D003366 3.0e-09 65.9 130 36.9
Rhsim13G0041900 Rhododendron simsii HOM05D002889 ORTHO05D003366 3.0e-09 65.9 150 34.7
Lj2C1137G6 Lonicera japonica HOM05D002889 ORTHO05D003366 5.2e-09 65.1 135 40.7
Medtr7g099480 Medicago truncatula HOM05D002889 ORTHO05D003366 5.2e-09 65.1 151 35.8
Nitab4.5_0002727g0040 Nicotiana tabacum HOM05D002889 ORTHO05D003366 5.2e-09 65.1 150 34.0
Nitab4.5_0003180g0050 Nicotiana tabacum HOM05D002889 ORTHO05D003366 5.2e-09 65.1 149 35.6
HanXRQChr10g0287251 Helianthus annuus HOM05D002889 ORTHO05D003366 8.8e-09 64.3 144 32.6
Sed0001453 Sechium edule HOM05D002889 ORTHO05D003366 8.8e-09 64.3 150 32.7
BraA09t36918Z Brassica rapa HOM05D002889 ORTHO05D003366 1.2e-08 63.9 135 36.3
CARHR110690 Cardamine hirsuta HOM05D002889 ORTHO05D003366 1.2e-08 63.9 132 35.6
DCAR_018539 Daucus carota HOM05D002889 ORTHO05D003366 1.2e-08 63.9 153 37.9
Glyma.13G130000 Glycine max HOM05D002889 ORTHO05D003366 1.5e-08 63.5 155 36.8
Sp3g33430 Schrenkiella parvula HOM05D002889 ORTHO05D003366 2.0e-08 63.2 135 35.6
Hund05497 Selenicereus undatus HOM05D002889 ORTHO05D003366 2.0e-08 63.2 150 34.7
Actinidia09497 Actinidia chinensis HOM05D002889 ORTHO05D003366 2.6e-08 62.8 151 35.8
BcaC04g22811 Brassica carinata HOM05D002889 ORTHO05D003366 2.6e-08 62.8 146 34.2
C09p15080 Brassica napus HOM05D002889 ORTHO05D003366 2.6e-08 62.8 146 34.2
BolC9t54414H Brassica oleracea HOM05D002889 ORTHO05D003366 2.6e-08 62.8 146 34.2
SGA_v2.0_scaffold3G01589 Striga asiatica HOM05D002889 ORTHO05D003366 2.6e-08 62.8 152 39.5
Eucgr.H00823 Eucalyptus grandis HOM05D002889 ORTHO05D003366 3.3e-08 62.4 152 33.6
Lalb_Chr20g0113361 Lupinus albus HOM05D002889 ORTHO05D003366 4.4e-08 62.0 145 35.2
Solyc06g008040.3 Solanum lycopersicum HOM05D002889 ORTHO05D003366 4.4e-08 62.0 149 34.2
Sopen06g002880 Solanum pennellii HOM05D002889 ORTHO05D003366 5.7e-08 61.6 149 34.2
BcaB03g16811 Brassica carinata HOM05D002889 ORTHO05D003366 7.5e-08 61.2 136 38.2
GSVIVG01028493001 Vitis vinifera HOM05D002889 ORTHO05D003366 1.3e-07 60.5 146 34.9
Peaxi162Scf00052g02011 Petunia axillaris HOM05D002889 ORTHO05D003366 1.7e-07 60.1 178 30.9
RcHm_v2.0_Chr1g0330791 Rosa chinensis HOM05D002889 ORTHO05D003366 1.7e-07 60.1 47 63.8
DCAR_012623 Daucus carota HOM05D002889 ORTHO05D003366 2.2e-07 59.7 148 38.5
Thhalv10001879m.g Eutrema salsugineum HOM05D002889 ORTHO05D003366 3.7e-07 58.9 133 36.8
HPP92_027294 Vanilla planifolia HOM05D002889 ORTHO05D003366 3.7e-07 58.9 151 33.1
Aqoxy5G00053 Aquilegia oxysepala HOM05D002889 ORTHO05D003366 4.8e-07 58.5 145 34.5
arahy.Tifrunner.gnm1.ann1.CB4TML Arachis hypogaea HOM05D002889 ORTHO05D003366 4.8e-07 58.5 147 33.3
unitig_746.g26747 Utricularia gibba HOM05D002889 ORTHO05D003366 6.3e-07 58.2 126 34.9
Lsat_1_v5_gn_8_90261 Lactuca sativa HOM05D002889 ORTHO05D003366 8.2e-07 57.8 147 35.4
EL10Ac7g17763 Beta vulgaris HOM05D002889 ORTHO05D003366 1.1e-06 57.4 104 41.3
EL10Ac7g17767 Beta vulgaris HOM05D002889 ORTHO05D003366 1.1e-06 57.4 104 41.3
A07p00540 Brassica napus HOM05D002889 ORTHO05D003366 1.1e-06 57.4 134 35.8
BraA07t27848Z Brassica rapa HOM05D002889 ORTHO05D003366 1.1e-06 57.4 134 35.8
Oeu015449.1 Olea europaea HOM05D002889 ORTHO05D003366 1.1e-06 57.4 133 34.6
arahy.Tifrunner.gnm1.ann1.73DRY2 Arachis hypogaea HOM05D002889 ORTHO05D003366 1.4e-06 57.0 147 32.7
SGA_v2.0_scaffold42G16158 Striga asiatica HOM05D002889 ORTHO05D003366 1.4e-06 57.0 160 32.5
BcaC06g36696 Brassica carinata HOM05D002889 ORTHO05D003366 1.8e-06 56.6 134 35.1
C07p00990 Brassica napus HOM05D002889 ORTHO05D003366 1.8e-06 56.6 134 35.1
BolC7t40536H Brassica oleracea HOM05D002889 ORTHO05D003366 1.8e-06 56.6 134 35.1
Oeu017344.1 Olea europaea HOM05D002889 ORTHO05D003366 4.1e-06 55.5 41 70.7


User provided reference genes

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