Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 0.0e+00 1672.1 861 100.0
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 8.4e-184 648.3 908 46.3
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.5e-169 599.4 919 43.1
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 2.9e-168 596.7 885 44.7
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 3.8e-168 596.3 905 44.3
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 5.5e-167 592.4 882 44.6
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 2.7e-166 590.1 903 43.7
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 1.0e-165 588.2 909 42.8
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.8e-165 587.4 914 43.4
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 5.7e-164 582.4 889 44.0
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 2.8e-163 580.1 921 44.0
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.2e-159 566.6 916 42.4
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.2e-158 564.7 916 42.2
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 3.0e-157 560.1 880 43.5
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 8.2e-155 552.0 897 42.4
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.4e-154 551.2 909 42.5
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 2.4e-154 550.4 917 40.7
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 4.5e-153 546.2 830 41.8
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 2.5e-151 540.4 893 42.2
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.5e-151 540.4 891 42.8
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 7.2e-151 538.9 891 42.6
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 3.6e-150 536.6 899 39.9
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 3.6e-150 536.6 891 41.5
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 9.7e-148 528.5 750 45.2
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 9.7e-148 528.5 725 44.8
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 2.2e-147 527.3 745 43.2
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 2.8e-147 526.9 907 41.8
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 5.3e-146 522.7 740 45.8
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 7.0e-146 522.3 891 40.1
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 2.6e-145 520.4 889 39.9
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 5.9e-145 519.2 926 39.8
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 5.9e-145 519.2 889 39.9
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 8.5e-144 515.4 901 40.0
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.1e-143 515.0 915 41.0
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 4.2e-143 513.1 748 43.0
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 7.2e-143 512.3 885 40.1
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 9.4e-143 511.9 915 39.7
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 3.6e-142 510.0 916 39.2
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.0e-141 508.4 542 53.5
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.4e-141 508.1 778 42.0
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 1.4e-141 508.1 924 40.2
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 1.8e-141 507.7 897 40.4
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.3e-141 507.3 893 40.8
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 3.0e-141 506.9 719 42.3
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 6.8e-141 505.8 898 40.0
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 1.5e-140 504.6 879 39.0
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 2.0e-140 504.2 919 40.3
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 3.4e-140 503.4 905 39.4
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 5.7e-140 502.7 926 38.8
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.7e-139 501.1 929 38.1
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 2.2e-139 500.7 902 39.7
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 6.3e-139 499.2 907 40.6
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 6.3e-139 499.2 886 40.0
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 5.4e-138 496.1 898 39.4
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 7.0e-138 495.7 894 40.0
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 9.1e-138 495.4 966 36.9
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.2e-137 495.0 798 41.7
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 1.6e-137 494.6 904 38.9
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 3.5e-137 493.4 903 39.4
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.7e-136 491.1 897 39.9
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 2.2e-136 490.7 893 39.4
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.9e-135 487.6 892 39.6
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 2.5e-135 487.3 915 37.8
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.1e-134 484.2 890 39.1
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.3e-133 480.7 892 39.3
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 3.0e-133 480.3 898 40.1
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.5e-132 478.0 690 43.5
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 4.4e-132 476.5 881 37.9
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 5.7e-132 476.1 888 38.0
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 3.7e-131 473.4 897 39.2
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 2.0e-129 467.6 903 38.0
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.0e-128 465.3 884 38.9
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 2.3e-128 464.2 630 46.2
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.5e-127 461.5 951 36.8
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 7.2e-127 459.1 641 43.1
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 2.1e-126 457.6 727 39.9
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 2.8e-126 457.2 748 42.2
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 2.3e-125 454.1 774 39.4
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 5.2e-125 453.0 865 37.6
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 8.9e-125 452.2 852 38.7
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 8.9e-125 452.2 666 41.6
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 1.5e-124 451.4 835 38.6
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 6.4e-123 446.0 676 40.7
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 1.4e-122 444.9 837 37.2
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.0e-121 441.0 897 35.8
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 2.7e-121 440.7 676 40.1
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 3.5e-121 440.3 889 36.1
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 4.6e-121 439.9 670 41.5
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.0e-120 438.7 835 37.4
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 6.6e-120 436.0 714 39.1
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 8.6e-120 435.6 706 39.0
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 8.6e-120 435.6 667 40.8
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 3.3e-119 433.7 706 38.8
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 3.3e-119 433.7 711 39.7
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 4.3e-119 433.3 706 38.8
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 2.1e-118 431.0 740 38.4
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 2.1e-118 431.0 832 36.8
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 2.1e-118 431.0 832 36.8
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 4.7e-118 429.9 739 39.9
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 4.7e-118 429.9 818 36.7
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 1.5e-116 424.9 951 35.2
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 7.8e-113 412.5 964 35.5
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 9.5e-111 405.6 748 40.6
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 4.4e-108 396.7 670 40.0
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 1.7e-107 394.8 785 37.1
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 2.2e-107 394.4 604 40.1
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 1.6e-105 388.3 762 37.4
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.5e-105 387.1 757 37.3
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 7.3e-103 379.4 661 38.4
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 4.6e-97 360.1 687 37.7
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 8.9e-93 345.9 718 36.1
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 8.9e-93 345.9 718 36.1
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 3.4e-92 344.0 720 37.1
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 7.6e-92 342.8 778 36.1
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.4e-90 338.6 760 35.7
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.4e-90 338.6 760 35.7
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 2.1e-89 334.7 356 51.4
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.8e-86 324.3 451 44.6
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.1e-85 322.4 300 65.0
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.9e-83 313.5 461 41.9
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 7.1e-74 283.1 685 36.2
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 2.1e-73 281.6 719 33.2
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 5.1e-72 276.9 468 41.9
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 2.5e-71 274.6 245 56.7
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.8e-69 268.5 265 48.7
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 6.9e-69 266.5 666 34.8
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.9e-66 258.5 353 45.9
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 6.0e-65 253.4 664 33.9
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 1.0e-64 252.7 817 30.0
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.0e-64 252.7 666 33.6
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 1.3e-54 219.2 490 33.1
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 5.3e-53 213.8 225 48.9
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 7.9e-49 199.9 334 35.6
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 5.1e-48 197.2 592 33.6
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 5.3e-45 187.2 196 54.1
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.5e-42 178.3 516 31.6
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.4e-40 172.6 821 27.3
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 1.8e-37 162.2 134 56.0
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 8.5e-35 153.3 142 50.7
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 5.5e-34 150.6 332 35.8
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.0e-32 146.4 499 29.3
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.0e-32 144.8 177 47.5
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.5e-31 142.5 147 49.0
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 3.3e-31 141.4 231 39.0
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 6.3e-30 137.1 510 31.8
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 5.3e-29 134.0 119 49.6
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 1.5e-26 125.9 236 36.4
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 2.3e-24 118.6 119 46.2
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.3e-24 118.6 366 33.1
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 8.8e-24 116.7 140 42.1
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 8.8e-24 116.7 235 35.7
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.5e-23 115.9 226 44.2
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 4.8e-22 110.9 112 51.8
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 1.8e-21 109.0 297 36.4
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 7.7e-20 103.6 107 44.9
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 7.7e-20 103.6 107 44.9
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.5e-18 99.4 319 32.0
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 9.5e-18 96.7 167 41.3
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 1.6e-17 95.9 365 30.7
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 2.7e-17 95.1 119 40.3
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 3.0e-16 91.7 119 42.9
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 6.8e-16 90.5 123 38.2
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 8.8e-16 90.1 73 63.0
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 2.0e-12 79.0 85 42.4
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 2.7e-12 78.6 85 42.4
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 2.7e-12 78.6 85 42.4
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 2.7e-12 78.6 85 41.2
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 2.7e-12 78.6 81 48.1
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 4.5e-12 77.8 79 48.1
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 7.7e-12 77.0 301 31.2
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 3.3e-10 71.6 81 45.7
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 7.3e-10 70.5 197 32.5
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 9.5e-10 70.1 88 37.5
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.2e-09 69.7 60 55.0
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 2.8e-09 68.6 86 47.7
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 1.0e-08 66.6 66 53.0
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 5.2e-08 64.3 75 41.3
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 1.2e-07 63.2 75 40.0
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 2.9e-06 58.5 50 48.0


User provided reference genes

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