Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0976 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 5.6e-77 290.8 141 100.0
CDE09G0004 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.5e-45 186.4 159 67.9
CDE02G0295 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.1e-40 170.2 163 63.2
CDE02G2432 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 6.5e-25 117.9 142 56.3
Ciclev10001735m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.8e-19 99.8 170 40.0
COL.COLO4_20731 Corchorus olitorius HOM05D005005 ORTHO05D006178 6.9e-19 97.8 170 39.4
Thecc.10G142900 Theobroma cacao HOM05D005005 ORTHO05D006178 6.9e-19 97.8 170 39.4
Oeu014630.2 Olea europaea HOM05D005005 ORTHO05D006178 9.1e-19 97.4 170 38.8
TWI38G1285 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 9.1e-19 97.4 173 38.7
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.0e-18 96.3 170 38.8
Manes.11G007250 Manihot esculenta HOM05D005005 ORTHO05D006178 2.6e-18 95.9 170 38.8
TWI63G1294 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 2.6e-18 95.9 173 38.2
Manes.04G156500 Manihot esculenta HOM05D005005 ORTHO05D006178 3.4e-18 95.5 170 39.4
Gohir.D06G184600 Gossypium hirsutum HOM05D005005 ORTHO05D006178 4.5e-18 95.1 170 38.8
Gorai.010G215900 Gossypium raimondii HOM05D005005 ORTHO05D006178 4.5e-18 95.1 170 38.8
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 7.7e-18 94.4 184 37.0
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 1.3e-17 93.6 182 36.3
Phvul.011G201500 Phaseolus vulgaris HOM05D005005 ORTHO05D006178 1.3e-17 93.6 166 40.4
Cfa010948 Carpinus fangiana HOM05D005005 ORTHO05D006178 1.7e-17 93.2 170 37.1
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 1.7e-17 93.2 170 37.6
Gohir.A10G189100 Gossypium hirsutum HOM05D005005 ORTHO05D006178 1.7e-17 93.2 170 37.6
Gohir.D10G197000 Gossypium hirsutum HOM05D005005 ORTHO05D006178 1.7e-17 93.2 170 37.6
Gorai.011G220200 Gossypium raimondii HOM05D005005 ORTHO05D006178 1.7e-17 93.2 170 37.6
QL04p021121 Quercus lobata HOM05D005005 ORTHO05D006178 1.7e-17 93.2 170 37.6
QL93p0049_0022 Quercus lobata HOM05D005005 ORTHO05D006178 1.7e-17 93.2 170 37.6
Zm00001eb129080 Zea mays HOM05D005005 ORTHO05D006178 1.7e-17 93.2 189 35.4
Cc09_g07690 Coffea canephora HOM05D005005 ORTHO05D006178 2.2e-17 92.8 170 37.6
Duzib106G1278 Durio zibethinus HOM05D005005 ORTHO05D006178 2.2e-17 92.8 170 38.2
Gohir.A06G174600 Gossypium hirsutum HOM05D005005 ORTHO05D006178 2.2e-17 92.8 170 38.2
PSO339G0382 Papaver somniferum HOM05D005005 ORTHO05D006178 2.2e-17 92.8 189 35.4
PSO384G4770 Papaver somniferum HOM05D005005 ORTHO05D006178 2.2e-17 92.8 189 35.4
Sed0024277 Sechium edule HOM05D005005 ORTHO05D006178 2.2e-17 92.8 164 39.6
arahy.Tifrunner.gnm1.ann1.HP7LLE Arachis hypogaea HOM05D005005 ORTHO05D006178 2.9e-17 92.4 166 39.8
MSTRG.20501 Avicennia marina HOM05D005005 ORTHO05D006178 2.9e-17 92.4 170 38.2
Glyma.15G230500 Glycine max HOM05D005005 ORTHO05D006178 2.9e-17 92.4 166 39.8
Lj7A493G34 Lonicera japonica HOM05D005005 ORTHO05D006178 2.9e-17 92.4 170 38.2
Lalb_Chr19g0132951 Lupinus albus HOM05D005005 ORTHO05D006178 2.9e-17 92.4 169 38.5
THA.LOC104799326 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 2.9e-17 92.4 173 36.4
VMungo1127G1151 Vigna mungo HOM05D005005 ORTHO05D006178 2.9e-17 92.4 167 38.3
Aqoxy1G00392 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 3.8e-17 92.0 170 37.6
Cpa.g.sc169.39 Carica papaya HOM05D005005 ORTHO05D006178 3.8e-17 92.0 170 38.2
CiPaw.14G009200 Carya illinoinensis HOM05D005005 ORTHO05D006178 3.8e-17 92.0 189 36.0
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 3.8e-17 92.0 170 38.2
CiPaw.14G111500 Carya illinoinensis HOM05D005005 ORTHO05D006178 5.0e-17 91.7 164 39.0
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 5.0e-17 91.7 164 39.6
THA.LOC104826755 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 5.0e-17 91.7 170 37.1
TPR.G8528 Trifolium pratense HOM05D005005 ORTHO05D006178 5.0e-17 91.7 166 39.2
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 5.0e-17 91.7 170 38.2
Glyma.13G192200 Glycine max HOM05D005005 ORTHO05D006178 6.5e-17 91.3 166 39.2
MBI19_g20792_MAGBIO Magnolia biondii HOM05D005005 ORTHO05D006178 6.5e-17 91.3 170 38.2
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 1.1e-16 90.5 167 38.9
ClCG08G010820 Citrullus lanatus HOM05D005005 ORTHO05D006178 1.1e-16 90.5 164 39.0
FvH4_7g03700 Fragaria vesca HOM05D005005 ORTHO05D006178 1.1e-16 90.5 170 37.1
FAN01G1292 Fragaria x ananassa HOM05D005005 ORTHO05D006178 1.1e-16 90.5 170 37.1
SalBow6G1153 Salvia bowleyana HOM05D005005 ORTHO05D006178 1.1e-16 90.5 166 37.3
SalBow6G1292 Salvia bowleyana HOM05D005005 ORTHO05D006178 1.1e-16 90.5 166 37.3
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 1.1e-16 90.5 177 36.7
Dinv32010 Davidia involucrata HOM05D005005 ORTHO05D006178 1.4e-16 90.1 189 34.9
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 1.4e-16 90.1 164 39.0
HanXRQChr11g0341211 Helianthus annuus HOM05D005005 ORTHO05D006178 1.4e-16 90.1 190 35.3
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 1.4e-16 90.1 170 37.1
MELO3C011380.2 Cucumis melo HOM05D005005 ORTHO05D006178 1.9e-16 89.7 167 37.1
CsaV3_6G035720 Cucumis sativus L. HOM05D005005 ORTHO05D006178 1.9e-16 89.7 167 37.1
Lj3g0014782 Lotus japonicus HOM05D005005 ORTHO05D006178 1.9e-16 89.7 166 38.6
MD07G1045900 Malus domestica HOM05D005005 ORTHO05D006178 1.9e-16 89.7 170 37.1
Prupe.2G042700 Prunus persica HOM05D005005 ORTHO05D006178 1.9e-16 89.7 170 37.1
RcHm_v2.0_Chr1g0326491 Rosa chinensis HOM05D005005 ORTHO05D006178 1.9e-16 89.7 170 37.1
GSVIVG01036640001 Vitis vinifera HOM05D005005 ORTHO05D006178 1.9e-16 89.7 170 37.6
CSS0003849 Camellia sinensis var. sinensis HOM05D005005 ORTHO05D006178 2.5e-16 89.4 170 37.1
Ca_23977_v3 Cicer arietinum L. HOM05D005005 ORTHO05D006178 2.5e-16 89.4 164 37.8
HanXRQChr01g0003701 Helianthus annuus HOM05D005005 ORTHO05D006178 2.5e-16 89.4 180 36.7
Rhsim07G0069000 Rhododendron simsii HOM05D005005 ORTHO05D006178 2.5e-16 89.4 170 37.1
vmacro13768 Vaccinium macrocarpon HOM05D005005 ORTHO05D006178 2.5e-16 89.4 170 37.1
Eucgr.G03212 Eucalyptus grandis HOM05D005005 ORTHO05D006178 3.2e-16 89.0 166 38.0
FAN10G2457 Fragaria x ananassa HOM05D005005 ORTHO05D006178 3.2e-16 89.0 170 37.1
MD02G1278000 Malus domestica HOM05D005005 ORTHO05D006178 3.2e-16 89.0 170 37.1
Lsat_1_v5_gn_1_117920 Lactuca sativa HOM05D005005 ORTHO05D006178 4.2e-16 88.6 190 35.8
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 5.5e-16 88.2 183 35.5
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 5.5e-16 88.2 164 38.4
Migut.B01249 Erythranthe guttata HOM05D005005 ORTHO05D006178 5.5e-16 88.2 170 37.1
Os01g0280000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 5.5e-16 88.2 189 36.5
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 5.5e-16 88.2 164 38.4
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 5.5e-16 88.2 166 37.3
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 7.2e-16 87.8 189 35.4
Nitab4.5_0002838g0130 Nicotiana tabacum HOM05D005005 ORTHO05D006178 7.2e-16 87.8 169 36.7
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 7.2e-16 87.8 164 37.8
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 9.4e-16 87.4 177 37.3
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 9.4e-16 87.4 171 35.7
Aqoxy2G00413 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 1.2e-15 87.0 189 35.4
CAN.G134.16 Capsicum annuum HOM05D005005 ORTHO05D006178 1.2e-15 87.0 169 36.7
Peaxi162Scf00220g00417 Petunia axillaris HOM05D005005 ORTHO05D006178 1.2e-15 87.0 169 36.1
CANSAT54G2608 Cannabis sativa HOM05D005005 ORTHO05D006178 1.6e-15 86.7 164 38.4
FAN06G0520 Fragaria x ananassa HOM05D005005 ORTHO05D006178 1.6e-15 86.7 180 35.0
Oeu013069.1 Olea europaea HOM05D005005 ORTHO05D006178 1.6e-15 86.7 186 34.9
SalBow6G0970 Salvia bowleyana HOM05D005005 ORTHO05D006178 1.6e-15 86.7 164 37.2
HPP92_021193 Vanilla planifolia HOM05D005005 ORTHO05D006178 1.6e-15 86.7 171 36.3
Potri.001G030900 Populus trichocarpa HOM05D005005 ORTHO05D006178 2.1e-15 86.3 170 37.6
Potri.003G194300 Populus trichocarpa HOM05D005005 ORTHO05D006178 2.1e-15 86.3 170 37.6
ClCG08G002660 Citrullus lanatus HOM05D005005 ORTHO05D006178 2.7e-15 85.9 164 37.2
Ciclev10027527m.g Citrus clementina HOM05D005005 ORTHO05D006178 2.7e-15 85.9 146 39.0
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 2.7e-15 85.9 195 33.8
Solyc01g096570.3 Solanum lycopersicum HOM05D005005 ORTHO05D006178 2.7e-15 85.9 164 37.2
Sopen01g040300 Solanum pennellii HOM05D005005 ORTHO05D006178 2.7e-15 85.9 164 37.2
PGSC0003DMG403003285 Solanum tuberosum HOM05D005005 ORTHO05D006178 2.7e-15 85.9 164 37.2
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 2.7e-15 85.9 170 37.1
ECA248G3166 Erigeron canadensis HOM05D005005 ORTHO05D006178 3.6e-15 85.5 190 34.2
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 3.6e-15 85.5 167 37.7
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 4.7e-15 85.1 164 37.8
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 4.7e-15 85.1 180 36.7
Actinidia07969 Actinidia chinensis HOM05D005005 ORTHO05D006178 7.9e-15 84.3 168 36.3
Lalb_Chr03g0032191 Lupinus albus HOM05D005005 ORTHO05D006178 7.9e-15 84.3 166 36.7
Actinidia06222 Actinidia chinensis HOM05D005005 ORTHO05D006178 1.0e-14 84.0 189 33.9
Haze_02996 Corylus avellana HOM05D005005 ORTHO05D006178 1.0e-14 84.0 194 32.5
MSTRG.5076 Avicennia marina HOM05D005005 ORTHO05D006178 1.4e-14 83.6 170 36.5
unitig_61.g26369 Utricularia gibba HOM05D005005 ORTHO05D006178 1.4e-14 83.6 166 36.1
Migut.N01858 Erythranthe guttata HOM05D005005 ORTHO05D006178 1.1e-13 80.5 170 34.7
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 4.4e-13 78.6 181 35.9
arahy.Tifrunner.gnm1.ann1.1L47SY Arachis hypogaea HOM05D005005 ORTHO05D006178 5.7e-13 78.2 203 32.5
Ciclev10027071m.g Citrus clementina HOM05D005005 ORTHO05D006178 3.7e-12 75.5 166 33.1
Ciclev10027488m.g Citrus clementina HOM05D005005 ORTHO05D006178 3.7e-12 75.5 166 33.1
Haze_23255 Corylus avellana HOM05D005005 ORTHO05D006178 8.2e-12 74.3 120 39.2
Psat4g145120 Pisum sativum HOM05D005005 ORTHO05D006178 8.2e-12 74.3 162 34.6
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 1.1e-11 73.9 164 34.1
FAN03G0125 Fragaria x ananassa HOM05D005005 ORTHO05D006178 5.3e-11 71.6 76 51.3
Sabra03G0145000 Salix brachista HOM05D005005 ORTHO05D006178 7.0e-11 71.2 207 30.4
Psat2g140280 Pisum sativum HOM05D005005 ORTHO05D006178 1.6e-10 70.1 123 37.4
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 2.6e-10 69.3 160 33.8
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 3.5e-10 68.9 123 37.4
Nitab4.5_0004168g0100 Nicotiana tabacum HOM05D005005 ORTHO05D006178 4.5e-10 68.6 76 48.7
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 5.0e-09 65.1 123 35.8
CDE04G0220 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.1e-08 63.9 76 46.1
Sabra01G0022200 Salix brachista HOM05D005005 ORTHO05D006178 1.1e-08 63.9 224 28.1
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 4.2e-08 62.0 167 32.3
Os11g0525900 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 3.6e-07 58.9 133 33.8
TAR636G3532 Trochodendron aralioides HOM05D005005 ORTHO05D006178 3.6e-07 58.9 65 49.2
Psat2g140320 Pisum sativum HOM05D005005 ORTHO05D004780 4.0e-06 55.5 33 69.7
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 5.2e-06 55.1 128 32.0


User provided reference genes

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