Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 8.2e-157 557.0 275 100.0
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 2.2e-93 346.3 250 66.0
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 8.3e-93 344.4 247 67.6
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 2.0e-91 339.7 220 74.1
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 3.5e-91 339.0 250 66.0
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 3.0e-90 335.9 249 64.7
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 6.6e-90 334.7 237 67.1
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 1.1e-89 334.0 250 64.4
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 1.9e-89 333.2 243 67.5
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 3.3e-89 332.4 257 63.4
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 4.3e-89 332.0 227 69.6
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 5.6e-89 331.6 225 71.1
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 5.6e-89 331.6 225 71.1
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 1.2e-88 330.5 249 64.3
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 1.6e-88 330.1 239 66.9
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 2.1e-88 329.7 249 63.5
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 2.8e-88 329.3 219 72.1
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 4.7e-88 328.6 246 65.0
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 8.1e-88 327.8 246 65.4
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 8.1e-88 327.8 253 64.4
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 1.1e-87 327.4 218 71.1
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 1.1e-87 327.4 237 65.8
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 1.4e-87 327.0 267 60.7
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 1.4e-87 327.0 262 62.6
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.8e-87 326.6 240 65.4
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 1.8e-87 326.6 252 62.7
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 1.8e-87 326.6 221 71.9
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 2.3e-87 326.2 206 74.8
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 2.3e-87 326.2 216 73.1
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 2.3e-87 326.2 216 73.1
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 2.3e-87 326.2 252 65.9
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 3.1e-87 325.9 240 65.4
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 3.1e-87 325.9 250 61.6
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 4.0e-87 325.5 227 70.5
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 6.8e-87 324.7 258 62.8
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 6.8e-87 324.7 238 66.8
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 8.9e-87 324.3 203 74.9
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 1.2e-86 323.9 239 65.7
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 1.2e-86 323.9 238 65.1
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 2.0e-86 323.2 238 64.7
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 2.0e-86 323.2 259 64.9
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 2.6e-86 322.8 265 60.8
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 2.6e-86 322.8 219 69.9
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 3.4e-86 322.4 215 70.2
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 3.4e-86 322.4 239 65.3
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 3.4e-86 322.4 214 70.1
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 3.4e-86 322.4 257 63.4
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 4.4e-86 322.0 246 66.3
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 4.4e-86 322.0 214 71.5
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 4.4e-86 322.0 217 72.8
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 5.8e-86 321.6 225 66.2
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 7.5e-86 321.2 210 71.0
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 9.8e-86 320.9 265 60.4
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 9.8e-86 320.9 225 69.8
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 1.3e-85 320.5 218 68.3
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 1.3e-85 320.5 218 69.7
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 1.3e-85 320.5 225 69.3
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 1.7e-85 320.1 221 68.8
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 1.7e-85 320.1 239 65.3
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 1.7e-85 320.1 210 73.3
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 2.2e-85 319.7 238 65.1
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 2.9e-85 319.3 249 63.5
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 2.9e-85 319.3 233 67.4
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 3.7e-85 318.9 262 60.7
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 3.7e-85 318.9 249 62.2
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 3.7e-85 318.9 207 74.4
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 3.7e-85 318.9 249 61.0
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 4.9e-85 318.5 228 68.0
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 6.4e-85 318.2 239 64.0
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.1e-84 317.4 272 59.9
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 1.1e-84 317.4 207 71.5
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 1.4e-84 317.0 228 67.5
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 1.4e-84 317.0 213 70.4
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 1.4e-84 317.0 206 73.3
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 1.4e-84 317.0 206 73.3
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 1.9e-84 316.6 218 69.3
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 2.4e-84 316.2 232 65.5
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 4.1e-84 315.5 219 69.4
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 5.4e-84 315.1 209 72.2
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 5.4e-84 315.1 247 61.9
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 5.4e-84 315.1 220 67.3
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 7.1e-84 314.7 254 61.0
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 7.1e-84 314.7 228 67.1
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 7.1e-84 314.7 239 66.1
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 7.1e-84 314.7 234 65.0
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 2.1e-83 313.2 210 71.0
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 4.6e-83 312.0 261 59.4
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 6.0e-83 311.6 213 71.4
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 7.8e-83 311.2 241 64.7
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 1.0e-82 310.8 246 62.6
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 1.3e-82 310.5 213 69.0
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.3e-82 310.5 234 63.7
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 2.3e-82 309.7 207 70.5
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 6.6e-82 308.1 240 60.8
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 6.6e-82 308.1 211 69.2
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 8.6e-82 307.8 213 68.5
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.1e-81 307.4 252 60.3
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 1.1e-81 307.4 206 69.4
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 1.9e-81 306.6 227 67.0
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 1.1e-79 300.8 260 60.8
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 5.2e-79 298.5 201 70.6
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 6.8e-79 298.1 237 62.0
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 2.6e-78 296.2 237 62.9
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 3.4e-78 295.8 209 67.0
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 4.4e-78 295.4 250 58.0
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 7.6e-78 294.7 303 51.5
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 1.7e-77 293.5 242 59.9
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 4.1e-76 288.9 236 61.4
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 9.2e-76 287.7 212 66.0
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 1.2e-75 287.3 191 70.7
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.6e-75 287.0 199 68.8
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 6.0e-75 285.0 213 67.6
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 7.8e-75 284.6 210 63.8
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 4.0e-71 272.3 199 67.8
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 6.4e-69 265.0 251 50.2
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.1e-68 264.2 322 46.3
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 1.0e-66 257.7 175 70.3
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 6.6e-66 255.0 215 55.3
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 2.8e-64 249.6 169 68.6
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 3.6e-64 249.2 167 69.5
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 4.0e-63 245.7 210 56.7
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.3e-61 240.7 170 67.6
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 2.9e-61 239.6 173 68.8
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 8.4e-61 238.0 192 60.9
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.9e-60 236.9 167 68.3
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.3e-58 229.9 166 63.9
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 1.5e-54 217.2 208 49.5
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 3.4e-54 216.1 213 52.6
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 5.8e-54 215.3 257 46.3
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 1.4e-52 210.7 218 50.5
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 4.2e-52 209.1 214 50.0
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.5e-52 208.8 155 66.5
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 1.9e-49 200.3 156 64.7
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 6.5e-45 185.3 169 56.2
Nitab4.5_0005621g0150 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.0e-42 176.4 117 70.9
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 5.7e-41 172.2 202 45.0
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 2.0e-38 163.7 145 57.9
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 1.3e-34 151.0 129 57.4
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 1.3e-34 151.0 129 57.4
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 1.3e-32 144.4 131 56.5
CAN.G604.3 Capsicum annuum HOM05D004609 ORTHO05D005537 5.3e-31 139.0 97 69.1
Nitab4.5_0006639g0060 Nicotiana tabacum HOM05D004609 ORTHO05D005537 6.9e-31 138.7 107 62.6
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 9.0e-31 138.3 187 41.2
CAN.G1153.4 Capsicum annuum HOM05D004609 ORTHO05D005537 2.2e-29 133.7 97 66.0
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 7.9e-27 125.2 98 61.2
Nitab4.5_0006639g0090 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.0e-26 124.8 113 54.0
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 1.8e-23 114.0 135 51.1
AUR62013942 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.0e-22 110.5 82 64.6
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 8.2e-16 88.6 94 55.3
Cre05.g234657 Chlamydomonas reinhardtii HOM05D004609 ORTHO05D005537 1.4e-15 87.8 202 31.7
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 1.9e-12 77.4 265 27.5
Actinidia28417 Actinidia chinensis HOM05D004609 ORTHO05D005537 7.2e-12 75.5 62 58.1
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 9.4e-12 75.1 265 27.2
AUR62017074 Chenopodium quinoa HOM05D004609 ORTHO05D005537 6.7e-10 68.9 91 48.4
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 1.5e-09 67.8 202 28.2
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 2.6e-09 67.0 197 28.9
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 5.7e-09 65.9 202 28.7
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 9.7e-09 65.1 212 25.5
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 1.7e-08 64.3 208 28.8
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 8.2e-08 62.0 206 24.8
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 1.1e-07 61.6 190 28.9
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 1.4e-07 61.2 215 26.5
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 2.4e-07 60.5 215 26.0
PRCOL_00005540 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 2.4e-07 60.5 141 27.7
Ca_29294_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 7.0e-07 58.9 138 30.4
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 1.2e-06 58.2 215 27.9
SHI25735 Sapria himalayana HOM05D004609 ORTHO05D005537 3.5e-06 56.6 42 57.1
Os03g0201600 Oryza sativa ssp. japonica HOM05D004609 ORTHO05D005537 5.9e-06 55.8 46 54.3
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 7.7e-06 55.5 200 26.5


User provided reference genes

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