Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0951 Ceratophyllum demersum HOM05D002304 ORTHO05D002363 8.5e-151 537.0 269 100.0
CDE02G4310 Ceratophyllum demersum HOM05D002304 ORTHO05D002363 1.2e-104 383.6 214 90.7
TAR374G0191 Trochodendron aralioides HOM05D002304 ORTHO05D002363 3.8e-50 202.6 298 48.3
TAR622G0025 Trochodendron aralioides HOM05D002304 ORTHO05D002363 1.4e-44 184.1 295 46.4
Nn4g22185 Nelumbo nucifera HOM05D002304 ORTHO05D002363 1.2e-43 181.0 274 44.9
TAR629G2925 Trochodendron aralioides HOM05D002304 ORTHO05D002363 7.2e-41 171.8 287 44.6
TAR371G0481 Trochodendron aralioides HOM05D002304 ORTHO05D002363 2.7e-40 169.9 294 43.2
Aqoxy5G03200 Aquilegia oxysepala HOM05D002304 ORTHO05D002363 1.0e-34 151.4 277 44.4
MD14G1149800 Malus domestica HOM05D002304 ORTHO05D002363 1.8e-31 140.6 279 41.2
Dinv23200 Davidia involucrata HOM05D002304 ORTHO05D002363 5.2e-31 139.0 283 42.0
Prupe.5G144600 Prunus persica HOM05D002304 ORTHO05D002363 2.6e-30 136.7 259 41.7
Dinv11217 Davidia involucrata HOM05D002304 ORTHO05D002363 5.7e-30 135.6 269 42.8
Aqoxy5G03199 Aquilegia oxysepala HOM05D002304 ORTHO05D002363 3.7e-29 132.9 264 36.7
MBI07_g40355_MAGBIO Magnolia biondii HOM05D002304 ORTHO05D002363 8.3e-29 131.7 289 37.7
Cpa.g.sc4.114 Carica papaya HOM05D002304 ORTHO05D002363 1.1e-28 131.3 300 38.3
CiPaw.06G108100 Carya illinoinensis HOM05D002304 ORTHO05D002363 1.8e-28 130.6 253 36.4
Ca_17577_v3 Cicer arietinum L. HOM05D002304 ORTHO05D002363 1.8e-28 130.6 291 38.1
MD06G1133400 Malus domestica HOM05D002304 ORTHO05D002363 2.4e-28 130.2 262 40.5
Manes.09G186400 Manihot esculenta HOM05D002304 ORTHO05D002363 3.5e-27 126.3 260 38.1
CsaV3_1G000210 Cucumis sativus L. HOM05D002304 ORTHO05D002363 4.5e-27 125.9 288 38.9
Sc22g0003530 Simmondsia chinensis HOM05D002304 ORTHO05D002363 5.9e-27 125.6 292 36.6
ClCG06G018240 Citrullus lanatus HOM05D002304 ORTHO05D002363 1.3e-26 124.4 285 38.6
Actinidia34006 Actinidia chinensis HOM05D002304 ORTHO05D002363 3.8e-26 122.9 255 40.0
MELO3C026174.2 Cucumis melo HOM05D002304 ORTHO05D002363 3.8e-26 122.9 288 38.5
Hma1.2p1_0168F.1_g074140 Hydrangea macrophylla HOM05D002304 ORTHO05D002363 5.0e-26 122.5 261 38.7
CiPaw.11G002000 Carya illinoinensis HOM05D002304 ORTHO05D002363 6.6e-26 122.1 276 38.0
Hma1.2p1_0093F.1_g047040 Hydrangea macrophylla HOM05D002304 ORTHO05D002363 2.5e-25 120.2 277 38.6
Haze_12481 Corylus avellana HOM05D002304 ORTHO05D002363 3.3e-25 119.8 251 35.5
CSS0038490 Camellia sinensis var. sinensis HOM05D002304 ORTHO05D002363 5.6e-25 119.0 283 39.6
PGR044G0596 Punica granatum HOM05D002304 ORTHO05D002363 7.3e-25 118.6 280 36.8
CiPaw.05G103300 Carya illinoinensis HOM05D002304 ORTHO05D002363 1.2e-24 117.9 246 35.8
Phvul.002G283300 Phaseolus vulgaris HOM05D002304 ORTHO05D002363 1.2e-24 117.9 296 35.8
RcHm_v2.0_Chr7g0189071 Rosa chinensis HOM05D002304 ORTHO05D002363 1.2e-24 117.9 262 40.1
Manes.08G102500 Manihot esculenta HOM05D002304 ORTHO05D002363 1.6e-24 117.5 259 35.1
TWI75G1229 Tripterygium wilfordii HOM05D002304 ORTHO05D002363 1.6e-24 117.5 258 37.6
Manes.14G046500 Manihot esculenta HOM05D002304 ORTHO05D002363 2.1e-24 117.1 286 35.7
VMungo0251G1409 Vigna mungo HOM05D002304 ORTHO05D002363 8.0e-24 115.2 292 34.9
Dinv09218 Davidia involucrata HOM05D002304 ORTHO05D002363 1.4e-23 114.4 255 37.6
FAN04G1150 Fragaria x ananassa HOM05D002304 ORTHO05D002363 1.8e-23 114.0 279 37.6
Glyma.05G201800 Glycine max HOM05D002304 ORTHO05D002363 1.8e-23 114.0 295 35.3
CANSAT80G1450 Cannabis sativa HOM05D002304 ORTHO05D002363 1.5e-22 110.9 276 35.9
Cfa018728 Carpinus fangiana HOM05D002304 ORTHO05D002363 1.5e-22 110.9 274 38.7
FAN08G1941 Fragaria x ananassa HOM05D002304 ORTHO05D002363 1.5e-22 110.9 256 39.5
CANSAT80G0059 Cannabis sativa HOM05D002304 ORTHO05D002363 2.0e-22 110.5 276 35.9
TWI18G0895 Tripterygium wilfordii HOM05D002304 ORTHO05D002363 2.6e-22 110.2 288 31.6
Duzib205G0973 Durio zibethinus HOM05D002304 ORTHO05D002363 5.7e-22 109.0 306 35.9
FAN18G4021 Fragaria x ananassa HOM05D002304 ORTHO05D002363 9.8e-22 108.2 257 40.1
Manes.06G125000 Manihot esculenta HOM05D002304 ORTHO05D002363 9.8e-22 108.2 285 34.4
Haze_07120 Corylus avellana HOM05D002304 ORTHO05D002363 1.7e-21 107.5 271 38.4
Hma1.2p1_0459F.1_g157130 Hydrangea macrophylla HOM05D002304 ORTHO05D002363 1.7e-21 107.5 248 36.7
Medtr8g099820 Medicago truncatula HOM05D002304 ORTHO05D002363 2.2e-21 107.1 275 33.1
Duzib068G0017 Durio zibethinus HOM05D002304 ORTHO05D002363 2.9e-21 106.7 312 34.9
Lj4g0003672 Lotus japonicus HOM05D002304 ORTHO05D002363 2.9e-21 106.7 269 34.9
Glyma.08G009200 Glycine max HOM05D002304 ORTHO05D002363 6.4e-21 105.5 284 33.5
TWI23G0131 Tripterygium wilfordii HOM05D002304 ORTHO05D002363 1.1e-20 104.8 285 34.7
Thecc.03G137800 Theobroma cacao HOM05D002304 ORTHO05D002363 1.8e-20 104.0 315 34.6
TPR.G36352 Trifolium pratense HOM05D002304 ORTHO05D002363 1.8e-20 104.0 288 33.3
FvH4_5g09120 Fragaria vesca HOM05D002304 ORTHO05D002363 7.0e-20 102.1 256 39.5
FAN13G2498 Fragaria x ananassa HOM05D002304 ORTHO05D002363 1.6e-19 100.9 279 36.6
Potri.001G062800 Populus trichocarpa HOM05D002304 ORTHO05D002363 5.9e-19 99.0 246 34.6
Gohir.D12G195000 Gossypium hirsutum HOM05D002304 ORTHO05D002363 1.0e-18 98.2 311 33.8
Gohir.A12G192900 Gossypium hirsutum HOM05D002304 ORTHO05D002363 1.7e-18 97.4 310 33.2
Eucgr.K02200 Eucalyptus grandis HOM05D002304 ORTHO05D002363 3.0e-18 96.7 263 35.0
Hund02484 Selenicereus undatus HOM05D002304 ORTHO05D002363 3.0e-18 96.7 243 37.0
TWI39G0786 Tripterygium wilfordii HOM05D002304 ORTHO05D002363 3.0e-18 96.7 284 34.2
vmacro16079 Vaccinium macrocarpon HOM05D002304 ORTHO05D002363 3.0e-18 96.7 274 34.7
QL03p049930 Quercus lobata HOM05D002304 ORTHO05D002363 8.6e-18 95.1 273 32.2
MD16G1128400 Malus domestica HOM05D002304 ORTHO05D002363 1.1e-17 94.7 252 34.1
Psat7g038560 Pisum sativum HOM05D002304 ORTHO05D002363 1.9e-17 94.0 290 32.1
Sabra03G0119800 Salix brachista HOM05D002304 ORTHO05D002363 2.5e-17 93.6 255 34.1
Atru.chr6.1893 Acer truncatum HOM05D002304 ORTHO05D002363 3.3e-17 93.2 317 32.2
Sabra01G0045200 Salix brachista HOM05D002304 ORTHO05D002363 3.3e-17 93.2 253 33.6
TWI14G0346 Tripterygium wilfordii HOM05D002304 ORTHO05D002363 4.3e-17 92.8 279 34.1
COL.COLO4_16694 Corchorus olitorius HOM05D002304 ORTHO05D002363 5.6e-17 92.4 319 33.5
Glyma.04G199700 Glycine max HOM05D002304 ORTHO05D002363 7.3e-17 92.0 275 33.8
vmacro16745 Vaccinium macrocarpon HOM05D002304 ORTHO05D002363 7.3e-17 92.0 263 32.3
Gorai.008G209700 Gossypium raimondii HOM05D002304 ORTHO05D002363 9.5e-17 91.7 311 33.1
Lsat_1_v5_gn_5_10720 Lactuca sativa HOM05D002304 ORTHO05D002363 9.5e-17 91.7 257 34.6
Ciclev10032137m.g Citrus clementina HOM05D002304 ORTHO05D002363 1.2e-16 91.3 273 34.1
Lsat_1_v5_gn_1_32321 Lactuca sativa HOM05D002304 ORTHO05D002363 2.1e-16 90.5 266 33.1
CSS0042081 Camellia sinensis var. sinensis HOM05D002304 ORTHO05D002363 2.8e-16 90.1 253 31.6
Sabra12G0077100 Salix brachista HOM05D002304 ORTHO05D002363 4.7e-16 89.4 261 34.1
Potri.012G104700 Populus trichocarpa HOM05D002304 ORTHO05D002363 6.2e-16 89.0 266 33.5
Psat5g054200 Pisum sativum HOM05D002304 ORTHO05D002363 8.0e-16 88.6 265 32.1
Ciclev10031840m.g Citrus clementina HOM05D002304 ORTHO05D002363 1.4e-15 87.8 259 32.8
Duzib084G0534 Durio zibethinus HOM05D002304 ORTHO05D002363 2.3e-15 87.0 308 33.1
Glyma.06G165800 Glycine max HOM05D002304 ORTHO05D002363 6.8e-15 85.5 293 31.7
Oeu058898.1 Olea europaea HOM05D002304 ORTHO05D002363 6.8e-15 85.5 261 34.1
HanXRQChr02g0034211 Helianthus annuus HOM05D002304 ORTHO05D002363 8.9e-15 85.1 284 31.0
Gohir.D11G041200 Gossypium hirsutum HOM05D002304 ORTHO05D002363 1.2e-14 84.7 266 32.3
DCAR_026257 Daucus carota HOM05D002304 ORTHO05D002363 1.5e-14 84.3 273 33.0
DCAR_026258 Daucus carota HOM05D002304 ORTHO05D002363 1.5e-14 84.3 273 33.0
Lj9P484T49 Lonicera japonica HOM05D002304 ORTHO05D002363 1.5e-14 84.3 185 38.9
MD13G1128000 Malus domestica HOM05D002304 ORTHO05D002363 1.5e-14 84.3 254 33.9
Phvul.009G163900 Phaseolus vulgaris HOM05D002304 ORTHO05D002363 1.5e-14 84.3 281 32.0
Atru.chr11.2414 Acer truncatum HOM05D002304 ORTHO05D002363 2.6e-14 83.6 258 32.9
Actinidia08898 Actinidia chinensis HOM05D002304 ORTHO05D002363 3.4e-14 83.2 243 36.2
Eucgr.G01957 Eucalyptus grandis HOM05D002304 ORTHO05D002363 4.4e-14 82.8 246 32.5
Gorai.007G044300 Gossypium raimondii HOM05D002304 ORTHO05D002363 1.7e-13 80.9 266 31.6
Gohir.A03G055000 Gossypium hirsutum HOM05D002304 ORTHO05D002363 2.2e-13 80.5 297 33.3
Rhsim12G0098700 Rhododendron simsii HOM05D002304 ORTHO05D002363 2.9e-13 80.1 257 32.7
Actinidia09607 Actinidia chinensis HOM05D002304 ORTHO05D002363 3.7e-13 79.7 222 36.0
GSVIVG01008623001 Vitis vinifera HOM05D002304 ORTHO05D002363 3.7e-13 79.7 274 30.7
Nitab4.5_0001408g0050 Nicotiana tabacum HOM05D002304 ORTHO05D002363 6.4e-13 79.0 261 32.6
FvH4_4g22930 Fragaria vesca HOM05D002304 ORTHO05D002363 8.3e-13 78.6 255 31.8
FAN12G0561 Fragaria x ananassa HOM05D002304 ORTHO05D002363 1.1e-12 78.2 255 31.8
Gorai.001G055000 Gossypium raimondii HOM05D002304 ORTHO05D002363 1.1e-12 78.2 289 28.4
Medtr3g498865 Medicago truncatula HOM05D002304 ORTHO05D002363 1.1e-12 78.2 244 32.4
Gorai.003G118200 Gossypium raimondii HOM05D002304 ORTHO05D002363 1.9e-12 77.4 295 33.2
Gohir.D09G248600 Gossypium hirsutum HOM05D002304 ORTHO05D002363 2.4e-12 77.0 296 31.8
Sp2g23550 Schrenkiella parvula HOM05D002304 ORTHO05D002363 3.2e-12 76.6 280 33.2
Gohir.D03G111900 Gossypium hirsutum HOM05D002304 ORTHO05D002363 4.1e-12 76.3 295 32.9
QL10p001059 Quercus lobata HOM05D002304 ORTHO05D002363 4.1e-12 76.3 319 30.1
TPR.G21591 Trifolium pratense HOM05D002304 ORTHO05D002363 4.1e-12 76.3 252 31.3
CANSAT01G2027 Cannabis sativa HOM05D002304 ORTHO05D002363 5.4e-12 75.9 260 33.8
FAN17G3093 Fragaria x ananassa HOM05D000011 ORTHO05D000018 5.4e-12 75.9 253 32.4
Gorai.006G272900 Gossypium raimondii HOM05D002304 ORTHO05D002363 5.4e-12 75.9 297 31.6
Potri.003G164600 Populus trichocarpa HOM05D002304 ORTHO05D002363 5.4e-12 75.9 256 30.1
THA.LOC104821531 Tarenaya hassleriana HOM05D002304 ORTHO05D002363 5.4e-12 75.9 253 32.8
PSO017G3403 Papaver somniferum HOM05D002304 ORTHO05D002363 7.0e-12 75.5 263 34.2
PSO478G4482 Papaver somniferum HOM05D002304 ORTHO05D002363 9.2e-12 75.1 263 32.7
Thhalv10005476m.g Eutrema salsugineum HOM05D002304 ORTHO05D002363 1.6e-11 74.3 266 31.2
THA.LOC104824608 Tarenaya hassleriana HOM05D002304 ORTHO05D002363 1.6e-11 74.3 273 30.8
CAN.G302.5 Capsicum annuum HOM05D002304 ORTHO05D002363 2.0e-11 73.9 255 30.6
Thhalv10010601m.g Eutrema salsugineum HOM05D002304 ORTHO05D002363 2.0e-11 73.9 246 31.7
SalBow2G2147 Salvia bowleyana HOM05D002304 ORTHO05D002363 2.7e-11 73.6 252 31.7
Gohir.A07G047700 Gossypium hirsutum HOM05D002304 ORTHO05D002363 3.5e-11 73.2 289 28.0
Glyma.08G258000 Glycine max HOM05D002304 ORTHO05D002363 6.0e-11 72.4 273 30.8
Phvul.008G018900 Phaseolus vulgaris HOM05D002304 ORTHO05D002363 6.0e-11 72.4 242 32.6
PGSC0003DMG400006479 Solanum tuberosum HOM05D002304 ORTHO05D002363 6.0e-11 72.4 254 30.7
PSO017G6198 Papaver somniferum HOM05D002304 ORTHO05D002363 7.8e-11 72.0 317 31.2
RcHm_v2.0_Chr4g0429181 Rosa chinensis HOM05D002304 ORTHO05D002363 1.0e-10 71.6 253 32.0
Nitab4.5_0000060g0010 Nicotiana tabacum HOM05D002304 ORTHO05D002363 1.3e-10 71.2 258 31.0
Aa31LG4G17340 Aethionema arabicum HOM05D002304 ORTHO05D002363 2.3e-10 70.5 250 30.4
Gohir.A09G247800 Gossypium hirsutum HOM05D002304 ORTHO05D002363 2.3e-10 70.5 291 29.6
Sopen05g018410 Solanum pennellii HOM05D002304 ORTHO05D002363 2.3e-10 70.5 263 31.2
HanXRQChr08g0236351 Helianthus annuus HOM05D002304 ORTHO05D002363 3.0e-10 70.1 243 29.2
Sabra15G0123800 Salix brachista HOM05D002304 ORTHO05D002363 5.0e-10 69.3 272 29.0
VMungo1383G0264 Vigna mungo HOM05D002304 ORTHO05D002363 5.0e-10 69.3 242 31.8
Ca_16079_v3 Cicer arietinum L. HOM05D002304 ORTHO05D002363 6.6e-10 68.9 271 30.3
Glyma.18G282400 Glycine max HOM05D002304 ORTHO05D002363 6.6e-10 68.9 270 29.6
Potri.015G104000 Populus trichocarpa HOM05D002304 ORTHO05D002363 6.6e-10 68.9 281 28.8
BcaC09g49903 Brassica carinata HOM05D002304 ORTHO05D002363 8.6e-10 68.6 239 28.0
C01p31480 Brassica napus HOM05D002304 ORTHO05D002363 8.6e-10 68.6 239 28.0
BolC1t03082H Brassica oleracea HOM05D002304 ORTHO05D002363 8.6e-10 68.6 239 28.0
Cc04_g09450 Coffea canephora HOM05D002304 ORTHO05D002363 8.6e-10 68.6 271 30.3
DCAR_007514 Daucus carota HOM05D002304 ORTHO05D002363 8.6e-10 68.6 267 31.5
CARHR157610 Cardamine hirsuta HOM05D002304 ORTHO05D002363 1.1e-09 68.2 252 32.5
BraA01t02431Z Brassica rapa HOM05D002304 ORTHO05D002363 1.5e-09 67.8 242 28.9
Peaxi162Scf00128g01713 Petunia axillaris HOM05D002304 ORTHO05D002363 1.5e-09 67.8 265 29.4
Carub.0005s1496 Capsella rubella HOM05D002304 ORTHO05D002363 1.9e-09 67.4 255 31.0
MSTRG.464 Avicennia marina HOM05D002304 ORTHO05D002363 2.5e-09 67.0 253 28.1
SEGI_28141 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.5e-09 67.0 380 25.5
Ah.02g114700 Amaranthus hybridus HOM05D002304 ORTHO05D002363 3.3e-09 66.6 247 30.0
AT3G48800 Arabidopsis thaliana HOM05D002304 ORTHO05D002363 3.3e-09 66.6 252 29.0
A01p25210 Brassica napus HOM05D002304 ORTHO05D002363 3.3e-09 66.6 274 28.5
Cc00_g28550 Coffea canephora HOM05D002304 ORTHO05D002363 3.3e-09 66.6 258 30.6
Sp5g13230 Schrenkiella parvula HOM05D002304 ORTHO05D002363 4.3e-09 66.2 253 29.6
HPP92_013601 Vanilla planifolia HOM05D002304 ORTHO05D002363 7.3e-09 65.5 269 28.3
CSS0004587 Camellia sinensis var. sinensis HOM05D002304 ORTHO05D002363 1.6e-08 64.3 241 33.2
Nitab4.5_0007858g0020 Nicotiana tabacum HOM05D002304 ORTHO05D002363 1.6e-08 64.3 262 28.6
PSO478G4492 Papaver somniferum HOM05D002304 ORTHO05D002363 2.8e-08 63.5 314 30.3
AL5G28310 Arabidopsis lyrata HOM05D002304 ORTHO05D002363 3.6e-08 63.2 253 30.0
Hund25504 Selenicereus undatus HOM05D002304 ORTHO05D002363 3.6e-08 63.2 263 30.0
BcaB05g22986 Brassica carinata HOM05D002304 ORTHO05D002363 6.2e-08 62.4 239 28.9
Ah.03g135680 Amaranthus hybridus HOM05D002304 ORTHO05D002363 8.1e-08 62.0 298 30.5
Migut.K01040 Erythranthe guttata HOM05D002304 ORTHO05D002363 8.1e-08 62.0 279 28.3
Gohir.D07G052000 Gossypium hirsutum HOM05D002304 ORTHO05D002363 8.1e-08 62.0 191 31.9
THA.LOC104798920 Tarenaya hassleriana HOM05D002304 ORTHO05D002363 8.1e-08 62.0 278 30.2
PGSC0003DMG400019853 Solanum tuberosum HOM05D002304 ORTHO05D002363 1.1e-07 61.6 252 25.8
BcaNung05210 Brassica carinata HOM05D002304 ORTHO05D002363 2.3e-07 60.5 248 27.4
AUR62028858 Chenopodium quinoa HOM05D002304 ORTHO05D002363 2.3e-07 60.5 269 29.4
Ca_07089_v3 Cicer arietinum L. HOM05D002304 ORTHO05D002363 2.3e-07 60.5 237 28.7
unitig_26.g10424 Utricularia gibba HOM05D002304 ORTHO05D002363 2.3e-07 60.5 279 29.0
Lalb_Chr07g0183691 Lupinus albus HOM05D002304 ORTHO05D002363 5.2e-07 59.3 278 30.2
SEGI_40179 Sequoiadendron giganteum HOM05D002304 ORTHO05D002363 5.2e-07 59.3 303 27.4
Sopen03g028520 Solanum pennellii HOM05D002304 ORTHO05D002363 6.8e-07 58.9 245 28.2
Lj1g0025612 Lotus japonicus HOM05D002304 ORTHO05D002363 8.9e-07 58.5 275 28.7
ATR0582G053 Amborella trichopoda HOM05D002304 ORTHO05D002363 1.2e-06 58.2 288 28.5
CARHR189880 Cardamine hirsuta HOM05D002304 ORTHO05D002363 1.5e-06 57.8 301 25.9
Lalb_Chr07g0183711 Lupinus albus HOM05D002304 ORTHO05D002363 3.4e-06 56.6 253 30.0
SGA_v2.0_scaffold87G27185 Striga asiatica HOM05D002304 ORTHO05D002363 3.4e-06 56.6 256 28.9
unitig_749.g13329 Utricularia gibba HOM05D002304 ORTHO05D002363 4.4e-06 56.2 277 28.5
AT5G23680 Arabidopsis thaliana HOM05D002304 ORTHO05D002363 9.9e-06 55.1 296 26.7


User provided reference genes

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