Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 2338.9 1167 100.0
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 1219.5 1429 49.7
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 1165.2 1431 48.4
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 1152.5 1423 47.8
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 1150.2 1399 49.0
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 1133.2 1445 46.6
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 1131.3 1428 46.6
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 1129.4 1428 46.2
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 1129.0 1430 46.6
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 1128.6 1416 48.0
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 1127.5 1431 46.7
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 1125.9 1429 47.1
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 1119.8 1413 47.5
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 1118.2 1423 46.9
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1117.1 1433 46.4
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1117.1 1399 47.5
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1114.4 1432 46.2
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 1111.7 1435 46.4
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1109.7 1433 46.1
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 1108.2 1428 46.2
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 1106.3 1438 45.9
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 1103.2 1426 46.1
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 1101.7 1417 46.2
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1098.2 1433 45.8
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 1092.0 1428 46.3
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1089.7 1429 45.6
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 1088.9 1411 46.6
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 1087.8 1413 46.4
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 1085.9 1412 46.2
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 1082.8 1425 45.5
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 1082.8 1432 45.6
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1082.0 1433 45.4
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 1079.3 1416 45.7
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 1078.5 1426 45.4
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 1078.5 1435 45.6
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 1078.2 1424 45.9
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 1077.8 1427 45.9
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 1077.4 1424 45.4
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 1075.8 1422 45.5
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 8.0e-312 1073.5 1423 45.5
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 1.3e-309 1066.6 1425 45.2
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 1.3e-309 1066.6 1449 44.7
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 2.3e-309 1065.8 1424 44.9
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 6.7e-309 1064.3 1410 45.5
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 7.4e-308 1060.8 1425 45.1
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 9.6e-308 1060.4 1418 44.7
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 3.7e-307 1058.5 1419 44.7
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 8.2e-307 1057.4 1431 45.2
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 4.5e-305 1051.6 1425 44.6
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 1.0e-304 1050.4 1399 45.1
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 1.7e-304 1049.7 1448 44.7
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 8.4e-304 1047.3 1433 44.5
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 1.4e-303 1046.6 1429 44.4
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 7.9e-302 1040.8 1420 43.9
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 2.3e-301 1039.3 1415 44.7
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 2.3e-301 1039.3 1421 45.0
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 1.9e-300 1036.2 1399 44.2
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 7.4e-300 1034.2 1409 44.6
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 7.4e-300 1034.2 1424 45.0
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 1.8e-298 1029.6 1438 44.3
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 2.4e-298 1029.2 1424 44.0
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 9.0e-298 1027.3 1425 44.7
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 3.4e-297 1025.4 1432 43.8
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 1.0e-296 1023.8 1402 44.0
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 1.7e-296 1023.1 1425 43.7
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 2.2e-296 1022.7 1455 43.4
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 3.8e-296 1021.9 1398 43.9
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 1.4e-295 1020.0 1394 44.8
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 5.5e-295 1018.1 1417 44.5
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 2.7e-294 1015.8 1432 43.2
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 4.6e-294 1015.0 1404 43.9
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 1.0e-293 1013.8 1430 43.1
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 1.1e-292 1010.4 1397 44.0
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 1.1e-292 1010.4 1397 44.0
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 1.1e-292 1010.4 1404 43.5
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 2.0e-292 1009.6 1406 43.7
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 5.7e-292 1008.1 1427 42.9
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 8.2e-291 1004.2 1428 43.2
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 1.4e-290 1003.4 1413 43.2
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 2.4e-290 1002.7 1399 43.9
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 2.4e-290 1002.7 1399 43.9
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 3.4e-289 998.8 1353 45.8
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 2.9e-288 995.7 1329 45.5
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 6.5e-288 994.6 1413 42.6
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 3.6e-286 988.8 1412 42.9
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 3.7e-283 978.8 1415 42.8
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 4.8e-283 978.4 1396 43.6
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 1.8e-277 959.9 1344 44.9
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 1.3e-272 943.7 1376 43.2
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 3.4e-260 902.5 1366 42.9
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 1.3e-256 890.6 1516 39.3
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 1.4e-253 880.6 1227 43.7
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 6.4e-251 871.7 1619 37.0
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 2.1e-222 776.9 1173 42.5
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 4.3e-215 752.7 1284 38.9
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 4.3e-207 726.1 1057 43.2
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 1.8e-205 720.7 1434 34.9
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 1.2e-201 708.0 1395 34.8
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 6.9e-181 639.0 610 58.0
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 2.5e-178 630.6 1359 33.5
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 4.4e-143 513.5 1766 27.6
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 7.7e-140 502.7 1330 31.2
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 1.5e-135 488.4 875 39.0
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 4.4e-135 486.9 857 37.6
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 1.5e-98 365.5 409 49.6
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 6.7e-75 287.0 421 40.9
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 9.7e-66 256.5 744 29.2
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 2.9e-62 245.0 197 63.5
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.6e-60 239.2 199 60.3
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 1.7e-46 192.6 135 71.1
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 4.0e-43 181.4 596 30.2
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 5.9e-39 167.5 140 60.7
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 4.1e-32 144.8 153 55.6
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 3.5e-31 141.7 92 76.1
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 5.6e-21 107.8 95 60.0
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 1.2e-18 100.1 108 55.6
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.1e-16 93.6 85 54.1
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 2.0e-10 72.8 563 21.0
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.3e-09 70.1 65 47.7
CDE02G4410 Ceratophyllum demersum HOM05D001668 ORTHO05D005522 1.2e-07 63.5 68 54.4


User provided reference genes

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