Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 3.8e-146 521.5 275 100.0
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.5e-142 508.8 275 96.7
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.5e-107 391.7 269 73.6
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 6.1e-104 381.3 271 73.1
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.4e-103 380.2 271 73.1
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.8e-103 379.8 269 72.9
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.3e-103 379.4 275 71.3
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 5.2e-103 378.3 274 71.2
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.8e-103 377.9 275 70.5
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 6.8e-103 377.9 269 72.9
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 3.4e-102 375.6 269 71.7
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 5.7e-102 374.8 269 73.2
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 5.7e-102 374.8 268 71.6
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 7.5e-102 374.4 275 70.9
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 1.3e-101 373.6 271 71.2
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.3e-101 373.6 268 71.3
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 1.3e-101 373.6 268 71.6
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 1.7e-101 373.2 271 71.6
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.7e-101 373.2 269 71.7
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 3.7e-101 372.1 268 72.0
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 3.7e-101 372.1 271 70.1
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 3.7e-101 372.1 268 70.1
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 4.9e-101 371.7 271 70.5
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 4.9e-101 371.7 277 68.6
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 8.3e-101 370.9 265 71.3
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.4e-100 369.4 269 72.1
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 3.2e-100 369.0 271 70.5
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 3.2e-100 369.0 268 70.9
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 4.1e-100 368.6 271 69.0
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 7.0e-100 367.9 271 69.7
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.2e-99 367.1 269 71.4
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 1.2e-99 367.1 269 71.4
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 2.0e-99 366.3 271 68.6
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.0e-99 366.3 271 70.8
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.0e-99 366.3 271 70.8
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.7e-99 365.9 271 68.6
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 3.5e-99 365.5 271 70.5
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 5.9e-99 364.8 267 68.9
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 5.9e-99 364.8 271 69.7
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 5.9e-99 364.8 268 69.8
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 7.8e-99 364.4 271 69.0
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 7.8e-99 364.4 268 69.8
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.0e-98 364.0 269 69.9
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.0e-98 364.0 271 67.2
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.0e-98 364.0 269 70.3
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.3e-98 363.6 273 70.3
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.7e-98 363.2 271 68.3
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 2.3e-98 362.8 268 69.0
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 2.3e-98 362.8 282 68.4
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 2.3e-98 362.8 275 69.1
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 6.6e-98 361.3 273 69.2
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 6.6e-98 361.3 273 69.2
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 6.6e-98 361.3 273 69.2
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 6.6e-98 361.3 273 69.2
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 6.6e-98 361.3 269 70.3
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.6e-98 361.3 271 67.9
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.6e-98 361.3 271 67.9
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 8.6e-98 360.9 271 69.0
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.1e-97 360.5 271 66.8
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.1e-97 360.5 269 69.5
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.9e-97 359.8 269 69.5
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.9e-97 359.8 288 65.3
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.9e-97 359.8 271 67.9
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 2.5e-97 359.4 269 69.5
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 2.5e-97 359.4 271 68.6
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 2.5e-97 359.4 268 68.3
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 2.5e-97 359.4 268 69.8
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 2.5e-97 359.4 273 70.7
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 3.3e-97 359.0 270 69.6
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 5.6e-97 358.2 272 68.8
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 7.3e-97 357.8 272 68.4
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 9.5e-97 357.5 272 68.4
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 9.5e-97 357.5 271 67.5
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 1.2e-96 357.1 273 70.0
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.6e-96 356.7 275 68.4
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.6e-96 356.7 272 67.6
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.6e-96 356.7 272 68.0
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.6e-96 356.7 271 68.3
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 2.1e-96 356.3 272 68.0
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 2.1e-96 356.3 272 68.0
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 3.6e-96 355.5 272 68.0
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.6e-96 355.5 272 68.8
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 4.7e-96 355.1 272 68.0
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 6.1e-96 354.8 271 67.5
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 8.0e-96 354.4 299 63.2
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.0e-95 354.0 272 67.6
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 1.0e-95 354.0 272 68.0
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.8e-95 353.2 272 67.6
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.3e-95 352.8 282 65.6
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 3.1e-95 352.4 272 67.6
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 4.0e-95 352.1 265 68.7
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 4.0e-95 352.1 277 67.5
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 5.2e-95 351.7 272 68.0
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 8.9e-95 350.9 269 66.9
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.5e-94 350.1 272 67.6
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 2.0e-94 349.7 269 66.9
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.0e-94 349.7 271 68.6
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 2.0e-94 349.7 265 67.5
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 3.4e-94 349.0 269 67.7
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 9.8e-94 347.4 271 67.5
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.3e-93 347.1 269 66.5
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 4.1e-92 342.0 271 66.8
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 9.2e-92 340.9 275 65.5
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 3.5e-91 339.0 257 70.0
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.3e-90 336.3 274 65.0
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 3.0e-90 335.9 268 64.6
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 3.9e-90 335.5 267 64.8
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.9e-89 333.2 282 61.3
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 4.3e-89 332.0 334 56.3
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.4e-87 327.0 261 64.0
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 1.8e-87 326.6 366 52.5
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 6.8e-87 324.7 253 67.2
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 6.8e-87 324.7 321 57.6
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.3e-85 320.5 314 56.7
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 3.9e-82 308.9 265 61.1
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 1.2e-78 297.4 264 57.2
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.5e-78 297.0 264 57.2
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.5e-78 297.0 267 55.8
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 2.0e-78 296.6 265 57.7
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 2.6e-78 296.2 267 55.4
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 4.4e-78 295.4 264 57.6
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 3.5e-75 285.8 271 54.2
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 1.0e-74 284.3 264 54.5
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.6e-72 276.9 214 66.4
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.1e-72 274.6 485 39.4
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.4e-71 273.9 485 39.4
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-69 266.9 250 57.2
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 1.0e-66 257.7 265 52.8
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 4.3e-65 252.3 277 51.6
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-64 250.4 253 56.5
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 3.6e-64 249.2 277 50.9
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 4.8e-64 248.8 250 55.2
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 2.4e-63 246.5 254 55.5
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 9.9e-62 241.1 277 50.2
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 4.9e-61 238.8 164 72.6
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-59 234.2 277 49.8
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.6e-59 233.8 277 49.5
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 6.0e-59 231.9 265 49.1
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.9e-57 226.9 294 49.3
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 4.8e-56 222.2 221 57.0
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 4.5e-54 215.7 253 53.8
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-52 210.7 251 49.4
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 9.3e-52 208.0 276 47.8
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 3.3e-49 199.5 140 72.1
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.6e-48 197.2 271 45.8
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 8.4e-45 184.9 148 65.5
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 2.5e-44 183.3 246 44.3
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 4.2e-44 182.6 131 71.0
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 3.0e-42 176.4 131 70.2
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 5.1e-42 175.6 266 44.0
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 9.6e-41 171.4 131 67.9
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 8.2e-40 168.3 136 65.4
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 4.2e-36 156.0 102 76.5
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 5.5e-36 155.6 136 58.8
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.5e-35 152.9 409 32.3
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.8e-34 150.6 96 78.1
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 8.7e-34 148.3 228 42.5
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.4e-31 141.0 164 51.8
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 5.9e-30 135.6 253 34.8
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 1.2e-27 127.9 263 33.5
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 3.0e-26 123.2 119 55.5
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.6e-22 110.2 150 47.3
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 3.4e-22 109.8 291 27.8
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 3.8e-21 106.3 134 44.8
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.7e-19 100.1 73 75.3
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.7e-16 90.9 59 76.3
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 2.6e-14 83.6 69 59.4
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 1.7e-13 80.9 49 81.6
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-13 80.5 49 79.6
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-13 80.5 49 79.6
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 2.2e-13 80.5 49 79.6
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 2.2e-13 80.5 72 58.3
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 5.0e-13 79.3 49 79.6
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 1.5e-12 77.8 77 50.6
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 9.4e-12 75.1 111 41.4
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 9.4e-12 75.1 47 76.6
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 8.0e-11 72.0 62 56.5
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 5.7e-09 65.9 53 56.6
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 1.7e-08 64.3 61 49.2
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.4e-07 61.2 63 49.2
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.4e-07 61.2 63 49.2
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.4e-07 60.5 63 49.2
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.6e-06 57.8 60 50.0
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.6e-06 57.8 40 67.5


User provided reference genes

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