Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 9.9e-162 573.5 324 100.0
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 3.3e-125 452.2 326 85.3
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.6e-90 337.0 290 64.1
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 5.2e-86 322.0 292 61.6
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.7e-84 317.0 296 62.8
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.9e-83 313.5 286 64.0
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.8e-79 299.7 281 62.3
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.6e-79 299.3 287 59.2
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.7e-79 298.9 282 62.1
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.8e-78 297.0 281 60.1
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 6.8e-78 295.0 320 56.2
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 6.8e-78 295.0 320 56.2
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.2e-77 294.3 294 59.9
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 5.8e-77 292.0 281 61.2
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.7e-76 290.4 291 56.4
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 2.2e-76 290.0 284 60.9
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 2.2e-76 290.0 300 59.0
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 2.9e-76 289.7 291 58.4
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.9e-76 289.7 288 56.9
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 4.9e-76 288.9 291 59.8
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 6.4e-76 288.5 293 58.7
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.3e-76 288.1 290 59.0
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.1e-75 287.7 290 57.6
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.4e-75 287.3 280 60.0
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.4e-75 286.6 291 59.5
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 3.2e-75 286.2 290 58.6
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.1e-75 285.8 290 58.6
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 5.4e-75 285.4 285 56.5
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 7.1e-75 285.0 283 58.7
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 9.2e-75 284.6 291 58.1
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 1.2e-74 284.3 287 57.5
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 1.6e-74 283.9 283 57.6
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.7e-74 283.1 309 54.4
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 2.7e-74 283.1 296 64.5
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 3.5e-74 282.7 295 57.3
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 4.6e-74 282.3 299 55.9
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 1.0e-73 281.2 284 57.0
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.0e-73 281.2 305 56.4
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 1.7e-73 280.4 294 56.1
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 3.0e-73 279.6 307 55.7
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 3.9e-73 279.3 285 57.2
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.6e-73 278.5 285 56.1
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.5e-72 276.6 290 56.6
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.5e-72 276.6 286 57.3
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 3.3e-72 276.2 286 55.9
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 3.3e-72 276.2 290 57.6
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 4.3e-72 275.8 290 56.2
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 4.3e-72 275.8 290 57.2
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 5.6e-72 275.4 294 56.5
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 5.6e-72 275.4 294 56.5
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 5.6e-72 275.4 286 57.0
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.6e-72 275.4 286 57.0
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 5.6e-72 275.4 285 55.8
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 5.6e-72 275.4 288 56.6
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.3e-72 275.0 285 56.1
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 7.3e-72 275.0 295 56.3
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 7.3e-72 275.0 302 54.6
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 7.3e-72 275.0 280 57.5
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 9.5e-72 274.6 286 57.0
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 9.5e-72 274.6 284 55.6
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 2.8e-71 273.1 282 57.4
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 3.6e-71 272.7 283 56.9
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 6.2e-71 271.9 296 55.1
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.1e-70 271.2 285 55.8
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 3.1e-70 269.6 299 54.5
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 4.0e-70 269.2 291 55.0
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 8.9e-70 268.1 299 53.2
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.5e-69 267.3 327 52.3
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.5e-69 267.3 292 56.2
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.5e-69 267.3 306 54.6
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 2.6e-69 266.5 298 54.7
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 4.4e-69 265.8 290 53.8
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 5.8e-69 265.4 223 65.9
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 9.9e-69 264.6 293 53.2
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.3e-68 264.2 297 53.5
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.3e-68 264.2 307 52.8
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.3e-68 264.2 280 55.4
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.9e-68 263.1 304 52.0
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 3.7e-68 262.7 268 57.1
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 4.9e-68 262.3 288 54.5
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 4.9e-68 262.3 293 53.9
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 6.4e-68 261.9 288 54.5
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 1.4e-67 260.8 287 54.0
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 9.2e-67 258.1 289 53.6
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 9.2e-67 258.1 288 53.1
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.2e-66 257.7 297 53.2
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 1.2e-66 257.7 302 54.6
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.6e-66 257.3 291 54.3
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 7.8e-66 255.0 291 50.9
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 7.8e-66 255.0 300 53.7
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.0e-65 254.6 290 55.5
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.9e-65 252.7 281 54.1
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 3.9e-65 252.7 305 52.8
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 3.9e-65 252.7 289 51.9
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 8.6e-65 251.5 281 53.7
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 2.5e-64 250.0 293 52.2
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 5.6e-64 248.8 286 52.1
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 5.6e-64 248.8 277 52.3
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 2.1e-63 246.9 298 53.7
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.1e-62 244.6 294 51.7
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.8e-62 243.8 287 53.7
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 4.0e-62 242.7 301 50.8
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 5.2e-62 242.3 291 50.2
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 5.2e-62 242.3 289 52.9
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 6.8e-62 241.9 302 53.0
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 8.9e-62 241.5 309 48.9
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.2e-61 241.1 294 53.7
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.0e-61 240.4 286 52.4
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.0e-61 240.4 288 51.7
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 3.4e-61 239.6 294 53.7
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.3e-60 237.7 283 50.2
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.7e-60 237.3 283 53.4
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 2.2e-60 236.9 309 47.9
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 2.9e-60 236.5 299 51.8
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.9e-60 235.7 282 51.4
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.4e-59 234.2 339 44.5
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.4e-59 233.4 290 49.3
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.1e-58 230.3 236 54.7
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.1e-58 230.3 179 69.3
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 1.3e-57 227.6 273 51.6
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.7e-57 227.3 286 48.6
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 9.6e-56 221.5 217 55.8
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 9.6e-56 221.5 278 52.5
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.3e-55 221.1 217 55.8
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 2.4e-54 216.9 266 50.4
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.0e-54 216.1 268 50.4
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 3.4e-53 213.0 159 69.2
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 3.2e-51 206.5 286 49.3
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 4.2e-51 206.1 170 64.1
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 4.6e-50 202.6 281 45.6
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 6.6e-49 198.7 161 65.2
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 3.3e-48 196.4 282 45.4
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 4.3e-48 196.1 127 75.6
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.1e-47 193.7 286 43.0
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 3.6e-47 193.0 292 41.8
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 3.6e-47 193.0 184 57.6
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.7e-44 184.1 119 75.6
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 9.3e-43 178.3 279 43.4
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 9.3e-43 178.3 286 40.6
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.3e-41 174.5 160 60.6
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.2e-37 161.4 264 41.3
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 5.8e-37 159.1 291 38.5
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 7.6e-37 158.7 281 42.0
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.5e-35 153.7 118 61.9
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.5e-35 153.7 118 61.9
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 3.5e-34 149.8 118 62.7
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 4.6e-34 149.4 131 55.7
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.3e-33 147.1 275 38.2
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.3e-31 141.4 233 43.3
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.5e-29 134.4 270 37.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 2.5e-27 127.1 191 40.3
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 5.1e-25 119.4 71 77.5
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 7.7e-21 105.5 174 41.4
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 3.3e-16 90.1 160 41.2
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 1.7e-15 87.8 121 47.9
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 1.4e-14 84.7 153 43.8
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 5.0e-12 76.3 58 62.1
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 4.4e-08 63.2 136 36.8
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 1.3e-07 61.6 62 62.9
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.8e-07 60.5 42 61.9
SEGI_05570 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.4e-06 57.4 85 44.7
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 4.1e-06 56.6 78 44.9


User provided reference genes

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