Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0717 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 4.8e-70 268.9 296 100.0
CDE09G0530 Ceratophyllum demersum HOM05D005996 ORTHO05D007507 3.0e-32 143.3 93 100.0
Sabra04G0111800 Salix brachista HOM05D005996 ORTHO05D007507 8.0e-25 118.6 295 62.4
TAR628G0048 Trochodendron aralioides HOM05D005996 ORTHO05D007507 3.4e-23 113.2 100 80.0
CSS0029020 Camellia sinensis var. sinensis HOM05D005996 ORTHO05D007507 3.7e-22 109.8 100 79.0
Haze_02211 Corylus avellana HOM05D005996 ORTHO05D007507 8.3e-22 108.6 100 77.0
Dinv04976 Davidia involucrata HOM05D005996 ORTHO05D007507 8.3e-22 108.6 100 77.0
QL11p046997 Quercus lobata HOM05D005996 ORTHO05D007507 1.1e-21 108.2 100 77.0
Lsat_1_v5_gn_4_74240 Lactuca sativa HOM05D005996 ORTHO05D007507 1.4e-21 107.8 100 75.0
BcaNung00650 Brassica carinata HOM05D005996 ORTHO05D007507 3.1e-21 106.7 100 75.0
Actinidia32089 Actinidia chinensis HOM05D005996 ORTHO05D007507 5.4e-21 105.9 100 77.0
Dinv41983 Davidia involucrata HOM05D005996 ORTHO05D007507 5.4e-21 105.9 99 75.8
GSVIVG01024119001 Vitis vinifera HOM05D005996 ORTHO05D007507 9.1e-21 105.1 99 79.8
Rhsim05G0064300 Rhododendron simsii HOM05D005996 ORTHO05D007507 1.2e-20 104.8 100 76.0
CiPaw.06G125900 Carya illinoinensis HOM05D005996 ORTHO05D007507 1.6e-20 104.4 265 53.6
Sed0010933 Sechium edule HOM05D005996 ORTHO05D007507 2.0e-20 104.0 97 78.4
Eucgr.I01366 Eucalyptus grandis HOM05D005996 ORTHO05D007507 2.7e-20 103.6 100 72.0
Hma1.2p1_0032F.1_g019730 Hydrangea macrophylla HOM05D005996 ORTHO05D007507 4.5e-20 102.8 100 75.0
Thecc.02G069400 Theobroma cacao HOM05D005996 ORTHO05D007507 7.7e-20 102.1 100 73.0
Sp7g32590 Schrenkiella parvula HOM05D005996 ORTHO05D007507 1.7e-19 100.9 99 73.7
AL7G16380 Arabidopsis lyrata HOM05D005996 ORTHO05D007507 2.3e-19 100.5 100 72.0
AT4G34830 Arabidopsis thaliana HOM05D005996 ORTHO05D007507 2.3e-19 100.5 100 72.0
CsaV3_2G015630 Cucumis sativus L. HOM05D005996 ORTHO05D007507 2.3e-19 100.5 99 76.8
FAN24G2882 Fragaria x ananassa HOM05D005996 ORTHO05D007507 2.3e-19 100.5 100 74.0
ClCG11G003680 Citrullus lanatus HOM05D005996 ORTHO05D007507 2.9e-19 100.1 99 75.8
RcHm_v2.0_Chr6g0245931 Rosa chinensis HOM05D005996 ORTHO05D007507 2.9e-19 100.1 100 75.0
TWI75G0427 Tripterygium wilfordii HOM05D005996 ORTHO05D007507 2.9e-19 100.1 99 71.7
arahy.Tifrunner.gnm1.ann1.XDQA6W Arachis hypogaea HOM05D005996 ORTHO05D007507 5.0e-19 99.4 100 72.0
arahy.Tifrunner.gnm1.ann1.YQYF3H Arachis hypogaea HOM05D005996 ORTHO05D007507 5.0e-19 99.4 100 72.0
Glyma.09G218800 Glycine max HOM05D005996 ORTHO05D007507 6.5e-19 99.0 100 71.0
Oeu046116.1 Olea europaea HOM05D005996 ORTHO05D007507 8.6e-19 98.6 100 73.0
Manes.11G088257 Manihot esculenta HOM05D005996 ORTHO05D007507 1.1e-18 98.2 99 72.7
Manes.11G088413 Manihot esculenta HOM05D005996 ORTHO05D007507 1.1e-18 98.2 99 72.7
FvH4_2g02240 Fragaria vesca HOM05D005996 ORTHO05D007507 2.5e-18 97.1 100 73.0
Peaxi162Scf00362g01048 Petunia axillaris HOM05D005996 ORTHO05D007507 3.2e-18 96.7 100 73.0
Cc02_g16690 Coffea canephora HOM05D005996 ORTHO05D007507 4.2e-18 96.3 100 75.0
MD05G1113900 Malus domestica HOM05D005996 ORTHO05D007507 4.2e-18 96.3 99 71.7
MELO3C020773.2 Cucumis melo HOM05D005996 ORTHO05D007507 7.2e-18 95.5 99 73.7
Zm00001eb027100 Zea mays HOM05D005996 ORTHO05D007507 9.5e-18 95.1 127 43.3
Cfa005165 Carpinus fangiana HOM05D005996 ORTHO05D007507 1.2e-17 94.7 94 74.5
Os10g0181200 Oryza sativa ssp. japonica HOM05D005996 ORTHO05D007507 6.1e-17 92.4 64 68.8
EL10Ac9g22244 Beta vulgaris HOM05D005996 ORTHO05D007507 1.4e-16 91.3 95 74.7
ECA234G3379 Erigeron canadensis HOM05D005996 ORTHO05D007507 1.4e-16 91.3 93 72.0
vmacro17393 Vaccinium macrocarpon HOM05D005996 ORTHO05D007507 1.4e-16 91.3 100 70.0
Sed0023130 Sechium edule HOM05D005996 ORTHO05D007507 1.8e-16 90.9 100 71.0
Nitab4.5_0000283g0180 Nicotiana tabacum HOM05D005996 ORTHO05D007507 2.3e-16 90.5 100 69.0
MSTRG.16865 Avicennia marina HOM05D005996 ORTHO05D007507 3.0e-16 90.1 97 72.2
Ca_19076_v3 Cicer arietinum L. HOM05D005996 ORTHO05D007507 4.0e-16 89.7 263 35.0
Cpa.g.sc37.207 Carica papaya HOM05D005996 ORTHO05D007507 5.2e-16 89.4 121 57.0
Glyma.12G033700 Glycine max HOM05D005996 ORTHO05D007507 6.8e-16 89.0 100 67.0
Duzib052G0584 Durio zibethinus HOM05D005996 ORTHO05D007507 8.8e-16 88.6 94 70.2
CAN.G588.14 Capsicum annuum HOM05D005996 ORTHO05D007507 2.0e-15 87.4 100 70.0
Potri.004G166600 Populus trichocarpa HOM05D005996 ORTHO05D007507 3.4e-15 86.7 91 71.4
SGA_v2.0_scaffold58G20447 Striga asiatica HOM05D005996 ORTHO05D007507 3.4e-15 86.7 100 68.0
VMungo1127G0707 Vigna mungo HOM05D005996 ORTHO05D007507 5.7e-15 85.9 91 69.2
DCAR_022928 Daucus carota HOM05D005996 ORTHO05D007507 1.3e-14 84.7 96 66.7
Hund06298 Selenicereus undatus HOM05D005996 ORTHO05D007507 1.8e-13 80.9 89 69.7
Ah.01g018430 Amaranthus hybridus HOM05D005996 ORTHO05D007507 9.2e-13 78.6 104 62.5
Sc08g0001200 Simmondsia chinensis HOM05D005996 ORTHO05D007507 2.0e-12 77.4 85 72.9
AUR62010338 Chenopodium quinoa HOM05D005996 ORTHO05D007507 2.7e-12 77.0 104 63.5
HPP92_022112 Vanilla planifolia HOM05D005996 ORTHO05D007507 1.3e-11 74.7 71 54.9
Migut.B00160 Erythranthe guttata HOM05D005996 ORTHO05D007507 7.3e-10 68.9 78 74.4
SMO106G0001 Selaginella moellendorffii HOM05D013590 ORTHO05D015741 6.1e-09 65.9 106 38.7
CANSAT25G2790 Cannabis sativa HOM05D005996 ORTHO05D007507 3.0e-08 63.5 64 84.4
C01p03970 Brassica napus HOM05D005996 ORTHO05D007507 5.2e-08 62.8 64 84.4
BolC1t00389H Brassica oleracea HOM05D005996 ORTHO05D007507 5.2e-08 62.8 64 84.4
Ciclev10027915m.g Citrus clementina HOM05D005996 ORTHO05D007507 8.9e-08 62.0 70 75.7
A01p03690 Brassica napus HOM05D005996 ORTHO05D007507 2.6e-07 60.5 64 82.8
BraA01t00353Z Brassica rapa HOM05D005996 ORTHO05D007507 2.6e-07 60.5 64 82.8
Phvul.011G036300 Phaseolus vulgaris HOM05D005996 ORTHO05D007507 9.8e-07 58.5 45 51.1
Aa31LG2G15710 Aethionema arabicum HOM05D005996 ORTHO05D007507 2.2e-06 57.4 62 80.6
Aqoxy5G01766 Aquilegia oxysepala HOM05D005996 ORTHO05D007507 2.2e-06 57.4 61 85.2
MBI09_g26149_MAGBIO Magnolia biondii HOM05D005996 ORTHO05D007507 3.7e-06 56.6 60 86.7
CARHR243120 Cardamine hirsuta HOM05D005996 ORTHO05D007507 8.3e-06 55.5 62 80.6
HPP92_022103 Vanilla planifolia HOM05D013590 ORTHO05D015741 8.3e-06 55.5 44 63.6


User provided reference genes

Program Settings