Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 3.8e-140 501.5 254 100.0
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 3.9e-113 411.8 252 85.3
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.3e-68 263.8 209 61.2
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 1.1e-67 260.8 221 57.9
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 1.1e-67 260.8 221 57.9
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 1.9e-67 260.0 216 60.2
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 5.5e-67 258.5 201 63.7
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 2.7e-66 256.1 202 61.4
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 4.7e-66 255.4 267 51.3
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 6.1e-66 255.0 221 55.7
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 6.1e-66 255.0 211 60.7
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 8.0e-66 254.6 202 62.9
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 1.4e-65 253.8 202 61.9
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.8e-65 253.4 202 61.4
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 3.0e-65 252.7 202 60.4
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 3.0e-65 252.7 202 60.4
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 5.2e-65 251.9 221 56.1
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 6.8e-65 251.5 221 56.1
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 1.2e-64 250.8 221 56.1
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 1.5e-64 250.4 199 61.3
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 2.0e-64 250.0 233 52.8
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 2.6e-64 249.6 221 55.7
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 2.6e-64 249.6 254 52.8
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 3.4e-64 249.2 221 54.8
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 3.4e-64 249.2 221 54.8
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.4e-64 248.8 221 56.1
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 4.4e-64 248.8 266 51.9
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 7.5e-64 248.1 258 52.3
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 7.5e-64 248.1 247 51.8
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 9.8e-64 247.7 251 52.6
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 1.3e-63 247.3 233 55.4
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 1.3e-63 247.3 202 59.9
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 2.8e-63 246.1 202 59.4
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.9e-63 245.4 202 57.9
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 4.9e-63 245.4 202 59.9
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 8.3e-63 244.6 239 52.3
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 1.8e-62 243.4 247 52.2
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.4e-62 243.0 202 57.4
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.4e-62 243.0 258 51.2
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 3.1e-62 242.7 202 57.9
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 3.1e-62 242.7 216 54.2
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 3.1e-62 242.7 271 48.0
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 3.1e-62 242.7 202 57.9
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 4.1e-62 242.3 247 52.2
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 7.0e-62 241.5 247 52.2
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 9.2e-62 241.1 272 48.5
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 9.2e-62 241.1 202 57.4
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 1.6e-61 240.4 216 57.4
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.6e-61 240.4 202 56.4
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 2.0e-61 240.0 245 52.2
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 2.0e-61 240.0 221 54.3
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 2.7e-61 239.6 277 48.4
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 4.5e-61 238.8 265 49.4
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 1.0e-60 237.7 221 53.4
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.0e-60 237.7 264 49.6
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 1.3e-60 237.3 207 54.1
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 1.3e-60 237.3 207 58.0
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 1.7e-60 236.9 237 51.9
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 2.3e-60 236.5 264 49.2
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 2.3e-60 236.5 273 48.4
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 2.9e-60 236.1 221 54.8
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 2.9e-60 236.1 187 61.0
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 3.8e-60 235.7 221 53.8
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 3.8e-60 235.7 278 48.6
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 3.8e-60 235.7 273 48.7
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 6.6e-60 235.0 202 56.9
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 8.6e-60 234.6 265 48.7
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 8.6e-60 234.6 253 51.0
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 1.1e-59 234.2 255 49.8
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 1.5e-59 233.8 197 57.9
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.5e-59 233.0 260 49.6
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 2.5e-59 233.0 255 50.6
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 3.3e-59 232.6 230 52.2
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 3.3e-59 232.6 226 52.2
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 4.3e-59 232.3 190 60.5
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 4.3e-59 232.3 277 45.5
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 5.6e-59 231.9 225 54.2
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 7.3e-59 231.5 216 53.7
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 7.3e-59 231.5 221 52.9
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 9.5e-59 231.1 298 43.6
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.6e-58 230.3 301 45.5
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 2.8e-58 229.6 224 52.2
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 3.6e-58 229.2 251 48.6
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 4.7e-58 228.8 251 48.2
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 4.7e-58 228.8 221 52.0
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 6.1e-58 228.4 259 47.9
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 8.0e-58 228.0 207 52.7
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 1.0e-57 227.6 221 51.6
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 1.0e-57 227.6 261 47.5
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 1.8e-57 226.9 221 52.5
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 3.0e-57 226.1 202 53.5
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 4.0e-57 225.7 217 53.5
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 4.0e-57 225.7 261 47.1
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 4.0e-57 225.7 252 47.2
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.2e-56 224.2 231 50.2
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 1.2e-56 224.2 221 52.0
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 2.0e-56 223.4 221 50.7
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 2.6e-56 223.0 203 54.7
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 4.4e-56 222.2 258 47.3
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 9.8e-56 221.1 247 47.8
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 9.8e-56 221.1 247 47.8
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 2.4e-54 216.5 258 45.7
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 3.2e-54 216.1 219 49.3
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 7.0e-54 214.9 354 40.7
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 4.6e-53 212.2 240 47.9
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 2.3e-52 209.9 267 45.7
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 3.0e-52 209.5 259 46.3
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 7.5e-48 194.9 202 47.0
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 8.3e-47 191.4 195 48.7
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 5.4e-46 188.7 221 45.7
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 2.3e-41 173.3 196 43.9
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 4.0e-41 172.6 154 55.8
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 5.2e-41 172.2 154 55.2
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 3.1e-33 146.4 158 48.7
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 1.3e-31 141.0 87 71.3
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 6.4e-31 138.7 83 75.9
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 2.3e-28 130.2 101 59.4
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 3.0e-28 129.8 87 65.5
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 3.3e-27 126.3 136 50.7
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 6.2e-26 122.1 101 57.4
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 3.1e-25 119.8 185 39.5
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 6.9e-25 118.6 106 54.7
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 2.0e-24 117.1 95 55.8
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 2.0e-24 117.1 95 56.8
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 7.6e-24 115.2 102 52.9
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 1.1e-22 111.3 106 49.1
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 2.1e-21 107.1 74 62.2
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 2.1e-21 107.1 100 53.0
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 1.3e-20 104.4 95 50.5
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 3.0e-20 103.2 94 46.8
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.2e-15 87.0 73 53.4
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 5.4e-14 82.4 61 57.4
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 5.4e-14 82.4 75 50.7
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 1.5e-11 74.3 104 39.4
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 2.1e-10 70.5 72 48.6
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 3.6e-10 69.7 79 50.6
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 4.8e-10 69.3 74 45.9
Oeu021121.1 Olea europaea HOM05D004806 ORTHO05D005397 8.1e-10 68.6 46 69.6
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 8.1e-10 68.6 66 53.0
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 4.0e-09 66.2 77 39.0
SalBow2G3552 Salvia bowleyana HOM05D034888 ORTHO05D005397 1.9e-06 57.4 39 66.7
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 3.2e-06 56.6 48 52.1
Oeu061605.1 Olea europaea HOM05D004806 ORTHO05D005397 3.2e-06 56.6 42 59.5


User provided reference genes

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