Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.6e-155 552.7 283 100.0
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.9e-100 369.8 294 68.0
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.6e-99 366.7 288 68.4
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 4.0e-98 362.1 240 76.2
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.5e-97 360.1 263 71.1
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.0e-97 359.8 215 82.8
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.3e-96 357.1 291 67.4
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 2.8e-96 355.9 264 70.5
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 2.8e-96 355.9 287 67.6
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 4.8e-96 355.1 206 86.4
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 6.3e-96 354.8 220 82.7
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.1e-95 354.0 290 66.6
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 1.1e-95 354.0 271 68.6
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.4e-95 353.6 289 67.1
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 2.4e-95 352.8 223 78.5
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 2.4e-95 352.8 285 67.0
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 2.4e-95 352.8 285 67.0
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 2.4e-95 352.8 280 67.9
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 4.1e-95 352.1 285 67.0
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 4.1e-95 352.1 293 65.9
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 5.4e-95 351.7 213 82.6
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 5.4e-95 351.7 223 79.4
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 7.0e-95 351.3 213 82.2
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 1.6e-94 350.1 208 85.6
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 2.7e-94 349.4 283 66.1
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 4.5e-94 348.6 223 79.4
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 4.5e-94 348.6 285 67.4
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 5.9e-94 348.2 293 65.9
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 7.7e-94 347.8 215 82.8
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 1.3e-93 347.1 204 83.8
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.3e-93 347.1 224 78.6
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 1.7e-93 346.7 225 78.7
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 2.3e-93 346.3 206 83.0
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 2.3e-93 346.3 223 78.5
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 2.3e-93 346.3 210 81.9
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 2.3e-93 346.3 218 80.3
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 3.8e-93 345.5 204 84.8
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 3.8e-93 345.5 292 65.4
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 8.6e-93 344.4 226 77.0
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 8.6e-93 344.4 202 84.2
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.1e-92 344.0 223 77.1
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.5e-92 343.6 223 77.1
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 1.5e-92 343.6 223 77.1
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 1.5e-92 343.6 197 87.8
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 1.9e-92 343.2 202 84.2
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.9e-92 343.2 204 82.8
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 1.9e-92 343.2 280 66.8
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 2.5e-92 342.8 202 85.1
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 2.5e-92 342.8 202 84.7
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 2.5e-92 342.8 202 84.7
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 2.5e-92 342.8 193 88.1
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 3.3e-92 342.4 204 82.8
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 3.3e-92 342.4 202 83.2
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 5.5e-92 341.7 204 84.8
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 5.5e-92 341.7 193 87.6
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 7.2e-92 341.3 202 84.7
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.6e-91 340.1 214 79.0
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 1.6e-91 340.1 225 78.2
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.6e-91 340.1 213 79.3
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 2.1e-91 339.7 284 65.5
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 3.6e-91 339.0 204 84.3
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 3.6e-91 339.0 284 64.1
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 3.6e-91 339.0 197 84.3
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 4.7e-91 338.6 238 72.3
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 4.7e-91 338.6 238 72.3
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 8.0e-91 337.8 234 75.6
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 1.0e-90 337.4 206 81.1
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.4e-90 337.0 226 77.4
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 1.8e-90 336.7 286 64.0
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 3.0e-90 335.9 281 65.1
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 4.0e-90 335.5 287 63.1
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 4.0e-90 335.5 224 76.8
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.2e-89 334.0 203 83.3
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 1.5e-89 333.6 286 63.6
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 1.5e-89 333.6 193 87.0
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 2.0e-89 333.2 195 84.6
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 3.4e-89 332.4 232 72.8
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 3.4e-89 332.4 284 64.1
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 5.7e-89 331.6 216 78.7
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 5.7e-89 331.6 204 80.9
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.3e-88 330.5 213 78.4
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 2.2e-88 329.7 207 80.2
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 2.8e-88 329.3 282 63.8
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 2.8e-88 329.3 282 63.8
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 2.8e-88 329.3 200 82.5
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 3.7e-88 328.9 233 73.4
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 6.3e-88 328.2 200 82.5
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 8.3e-88 327.8 281 64.1
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 8.3e-88 327.8 281 64.1
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.1e-87 327.4 200 81.5
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 1.4e-87 327.0 239 72.0
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.8e-87 326.6 195 83.1
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 3.1e-87 325.9 292 62.3
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 5.4e-87 325.1 285 63.2
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 7.0e-87 324.7 282 64.2
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 9.2e-87 324.3 194 83.5
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 9.2e-87 324.3 185 85.9
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 9.2e-87 324.3 206 80.1
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 9.2e-87 324.3 201 81.1
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.6e-86 323.6 217 74.7
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 1.6e-86 323.6 195 83.6
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.7e-85 320.1 267 64.0
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 5.0e-85 318.5 195 83.1
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 7.3e-84 314.7 201 80.1
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 2.3e-82 309.7 275 62.5
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 3.0e-82 309.3 185 83.8
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 6.8e-82 308.1 184 82.6
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 6.8e-82 308.1 282 61.0
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 2.0e-81 306.6 185 83.8
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.2e-80 303.1 184 82.6
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 6.0e-78 295.0 342 51.2
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 2.3e-77 293.1 232 69.8
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 2.8e-75 286.2 246 64.6
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 1.5e-73 280.4 157 89.8
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 2.6e-73 279.6 265 60.0
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.7e-72 276.9 204 72.1
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 8.3e-72 274.6 180 80.0
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.1e-68 264.2 251 60.6
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 2.0e-65 253.4 158 80.4
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 2.9e-64 249.6 236 59.7
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 1.1e-63 247.7 134 93.3
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 1.4e-63 247.3 150 83.3
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 5.4e-63 245.4 160 74.4
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 7.8e-62 241.5 192 63.5
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 6.2e-59 231.9 160 70.0
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 4.0e-58 229.2 191 67.0
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 8.9e-58 228.0 285 49.8
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 4.4e-57 225.7 134 84.3
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 6.9e-50 201.8 178 64.0
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 5.1e-45 185.7 146 67.1
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 4.2e-39 166.0 89 94.4
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 3.5e-38 162.9 90 93.3
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.6e-33 146.7 174 50.0
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 7.6e-33 145.2 158 52.5
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 4.3e-28 129.4 174 45.4
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 2.7e-22 110.2 78 70.5
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 1.1e-20 104.8 78 66.7
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 1.6e-19 100.9 85 58.8
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 5.0e-16 89.4 66 68.2
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 1.4e-07 61.2 48 58.3
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.9e-07 60.8 81 42.0


User provided reference genes

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