Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 4.1e-125 451.4 236 100.0
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 9.0e-104 380.6 236 88.1
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 5.7e-82 308.1 235 71.5
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.3e-81 307.0 232 70.7
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 4.5e-79 298.5 232 68.5
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 7.7e-79 297.7 230 67.4
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 7.2e-77 291.2 232 66.4
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.1e-76 289.7 241 65.1
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 3.9e-75 285.4 233 67.8
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 2.8e-73 279.3 232 68.5
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 3.7e-73 278.9 230 67.0
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.3e-73 278.1 232 65.1
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 8.2e-73 277.7 232 65.1
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 8.2e-73 277.7 232 64.7
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 2.4e-72 276.2 226 65.5
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 1.2e-71 273.9 232 64.7
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.2e-71 273.9 232 64.2
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.0e-71 273.1 233 64.4
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 7.7e-71 271.2 232 65.5
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 1.0e-70 270.8 232 64.2
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 2.9e-70 269.2 232 62.9
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 2.5e-69 266.2 232 62.9
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 2.5e-69 266.2 236 62.7
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.5e-69 265.0 230 61.7
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.2e-68 263.8 187 74.3
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.6e-68 263.5 242 62.0
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 1.0e-67 260.8 235 61.7
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.4e-67 260.4 232 64.2
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.4e-67 260.4 232 62.1
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 2.3e-67 259.6 235 61.3
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.3e-67 259.6 233 63.1
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 3.9e-67 258.8 224 65.2
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 5.1e-67 258.5 236 62.7
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.1e-66 257.3 232 62.1
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.1e-66 257.3 235 62.6
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.3e-66 255.8 224 66.1
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 3.3e-66 255.8 224 66.1
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.4e-66 255.4 228 62.3
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.4e-66 255.4 236 62.3
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.4e-66 255.4 228 61.8
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.7e-66 255.0 202 66.8
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.7e-66 255.0 202 66.8
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 7.4e-66 254.6 230 61.3
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 7.4e-66 254.6 228 62.7
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.7e-65 253.4 249 60.6
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.7e-65 253.4 235 60.4
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 2.8e-65 252.7 240 59.6
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.8e-65 252.7 202 66.8
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 3.7e-65 252.3 215 64.2
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 3.7e-65 252.3 188 70.2
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 8.2e-65 251.1 314 51.6
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 1.1e-64 250.8 236 61.9
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.1e-64 250.8 233 61.8
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.8e-64 250.0 225 63.6
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 2.4e-64 249.6 225 61.3
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.1e-64 248.8 233 61.8
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.2e-63 247.3 224 64.7
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.5e-63 246.9 178 73.6
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.7e-63 244.6 233 60.5
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 1.0e-62 244.2 202 65.8
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 1.3e-62 243.8 192 68.8
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 2.2e-62 243.0 224 61.6
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 3.8e-62 242.3 226 61.5
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 8.5e-62 241.1 225 60.9
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.5e-61 240.4 232 60.3
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.5e-61 240.4 192 67.7
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 2.5e-61 239.6 266 53.0
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 2.5e-61 239.6 230 59.1
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 3.2e-61 239.2 218 62.8
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 3.2e-61 239.2 225 58.2
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.7e-60 235.3 175 72.0
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 6.1e-60 235.0 193 67.4
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 1.4e-59 233.8 231 60.2
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 1.8e-59 233.4 236 58.1
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.8e-59 233.4 220 61.8
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 3.0e-59 232.6 225 60.4
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 8.8e-59 231.1 232 59.1
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 8.8e-59 231.1 232 59.5
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 8.8e-59 231.1 233 57.9
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 2.0e-58 229.9 198 63.1
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 7.5e-58 228.0 328 45.7
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 2.2e-57 226.5 224 62.1
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 3.7e-57 225.7 228 56.6
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.8e-57 225.3 228 55.7
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 4.8e-57 225.3 229 57.6
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 8.2e-57 224.6 183 66.1
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 2.4e-56 223.0 248 53.2
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 5.3e-56 221.9 230 55.7
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 1.6e-55 220.3 232 58.6
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.6e-55 220.3 233 57.5
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 5.9e-55 218.4 148 75.0
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.0e-54 217.6 173 67.6
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.0e-54 217.6 233 57.5
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.3e-54 217.2 221 56.6
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.7e-54 216.9 191 60.7
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.7e-54 216.9 227 56.8
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 3.8e-54 215.7 236 56.4
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 1.1e-53 214.2 209 59.8
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 1.5e-53 213.8 234 56.0
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 9.4e-53 211.1 256 54.3
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 2.7e-52 209.5 187 63.1
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 3.6e-52 209.1 219 56.6
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 6.1e-52 208.4 245 54.3
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 5.2e-51 205.3 222 54.5
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 6.8e-51 204.9 225 54.2
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 2.0e-50 203.4 234 55.1
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.0e-50 203.4 226 55.8
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 3.4e-50 202.6 231 54.5
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 4.4e-50 202.2 229 55.5
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 5.7e-50 201.8 211 52.6
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.3e-49 200.7 192 59.4
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.3e-49 200.7 226 52.7
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 3.7e-49 199.1 187 60.4
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 1.8e-48 196.8 208 57.7
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 2.4e-48 196.4 228 54.4
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 7.0e-48 194.9 225 53.8
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.0e-47 193.4 208 55.3
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 5.9e-47 191.8 246 52.0
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 5.9e-47 191.8 220 50.0
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.2e-46 189.9 241 51.9
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 3.8e-46 189.1 209 54.1
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 6.5e-46 188.3 204 52.5
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.9e-45 186.8 207 55.6
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.9e-45 186.8 193 56.5
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 3.2e-45 186.0 192 55.7
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 4.2e-45 185.7 256 45.3
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 1.2e-44 184.1 206 53.4
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 1.6e-44 183.7 206 51.9
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 2.7e-44 183.0 203 51.7
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 3.6e-44 182.6 206 51.5
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 3.6e-44 182.6 206 51.5
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 1.0e-43 181.0 201 52.2
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 6.8e-43 178.3 205 52.2
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 8.8e-43 177.9 191 53.4
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 8.8e-43 177.9 233 50.6
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.2e-42 177.6 230 52.2
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 1.5e-42 177.2 202 54.0
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.5e-42 177.2 241 49.4
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 4.4e-42 175.6 192 52.6
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 9.8e-42 174.5 160 61.2
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 2.2e-41 173.3 149 59.7
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 8.3e-41 171.4 196 53.1
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 1.4e-40 170.6 120 72.5
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 2.7e-39 166.4 222 45.9
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.0e-38 164.5 103 74.8
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.3e-38 164.1 108 69.4
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 2.3e-38 163.3 94 81.9
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 6.6e-38 161.8 196 53.1
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 2.5e-37 159.8 102 76.5
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 6.8e-35 151.8 191 47.1
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 1.2e-34 151.0 155 58.1
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.4e-34 149.1 120 67.5
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 6.4e-33 145.2 195 49.2
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 5.9e-31 138.7 84 79.8
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 5.9e-31 138.7 84 79.8
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.8e-27 127.1 131 58.8
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.6e-26 123.2 121 55.4
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 9.8e-26 121.3 164 47.6
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.3e-25 120.9 81 70.4
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.6e-23 114.0 87 67.8
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 2.7e-23 113.2 111 54.1
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.6e-20 104.0 233 36.5
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 4.1e-16 89.4 129 40.3
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 8.1e-12 75.1 98 40.8
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 9.9e-10 68.2 40 77.5
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 6.4e-09 65.5 138 34.8
QL09p050907 Quercus lobata HOM05D004056 ORTHO05D004894 4.1e-08 62.8 94 46.8
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 7.1e-08 62.0 43 65.1


User provided reference genes

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