Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 8.9e-137 490.3 262 100.0
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 2.2e-79 299.7 267 60.7
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 2.2e-74 283.1 266 56.8
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.4e-73 280.4 267 58.8
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 1.2e-72 277.3 259 58.3
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 5.9e-72 275.0 267 57.3
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 1.0e-71 274.2 259 58.7
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 2.9e-71 272.7 258 57.4
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 3.2e-70 269.2 265 54.3
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 4.2e-70 268.9 265 54.3
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 7.2e-70 268.1 269 56.5
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 1.2e-69 267.3 266 53.4
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 2.7e-69 266.2 265 54.0
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 1.0e-68 264.2 266 54.9
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 1.4e-68 263.8 258 55.0
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 1.4e-68 263.8 268 53.0
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 1.8e-68 263.5 265 57.0
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.8e-68 263.5 265 55.1
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 4.0e-68 262.3 260 55.8
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 5.2e-68 261.9 260 53.1
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 6.8e-68 261.5 268 57.5
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 8.8e-68 261.2 266 53.0
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.5e-67 260.4 268 54.5
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.5e-67 260.4 268 54.5
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 1.5e-67 260.4 271 53.9
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 2.0e-67 260.0 267 53.2
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 3.4e-67 259.2 266 52.6
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 7.5e-67 258.1 267 50.6
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.3e-66 257.3 260 55.0
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.7e-66 256.9 258 53.1
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 6.3e-66 255.0 269 52.0
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 1.4e-65 253.8 261 52.5
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 2.4e-65 253.1 267 52.8
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 3.1e-65 252.7 261 53.3
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 3.1e-65 252.7 267 53.6
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 4.1e-65 252.3 274 52.2
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 5.3e-65 251.9 266 51.1
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 9.1e-65 251.1 259 51.7
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 1.2e-64 250.8 266 50.8
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.2e-64 250.8 266 51.9
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 1.6e-64 250.4 265 53.2
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 1.6e-64 250.4 264 51.9
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 3.5e-64 249.2 266 51.1
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 7.7e-64 248.1 267 51.7
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 1.0e-63 247.7 271 50.6
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 2.9e-63 246.1 266 50.4
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 2.9e-63 246.1 258 52.3
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 5.0e-63 245.4 272 51.1
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 5.0e-63 245.4 272 50.0
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 6.5e-63 245.0 266 51.1
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 6.5e-63 245.0 266 51.1
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 1.5e-62 243.8 261 50.6
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 1.5e-62 243.8 257 51.0
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 1.5e-62 243.8 268 50.4
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 3.2e-62 242.7 274 50.0
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 4.2e-62 242.3 275 50.2
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 1.6e-61 240.4 256 52.7
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 5.2e-60 235.3 268 50.0
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 2.6e-59 233.0 259 50.2
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 2.6e-59 233.0 260 51.9
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 5.7e-59 231.9 267 49.4
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 9.8e-59 231.1 266 50.0
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 9.8e-59 231.1 266 48.5
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 1.3e-58 230.7 247 51.0
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 2.2e-58 229.9 266 49.6
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 2.8e-58 229.6 267 48.3
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 6.3e-58 228.4 267 52.4
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 6.3e-58 228.4 303 45.2
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 6.3e-58 228.4 303 45.2
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 1.1e-57 227.6 273 49.1
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.8e-57 226.9 240 52.1
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 5.4e-57 225.3 265 48.7
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 1.6e-56 223.8 268 49.6
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 2.7e-56 223.0 260 48.1
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 3.5e-56 222.6 272 47.4
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 3.5e-56 222.6 271 50.6
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 7.7e-56 221.5 271 46.9
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 7.7e-56 221.5 227 54.2
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 2.9e-55 219.5 269 44.2
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 6.6e-55 218.4 268 45.1
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 6.6e-55 218.4 118 89.8
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 6.6e-55 218.4 265 47.2
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 1.1e-54 217.6 237 51.1
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 1.5e-54 217.2 267 46.4
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 3.3e-54 216.1 272 45.6
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 3.3e-54 216.1 242 50.8
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 4.2e-54 215.7 269 47.2
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 5.5e-54 215.3 261 43.7
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 5.5e-54 215.3 249 49.4
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 7.2e-54 214.9 268 47.0
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 9.5e-54 214.5 251 50.2
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.6e-53 213.8 264 48.9
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 2.8e-53 213.0 269 44.2
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 3.6e-53 212.6 266 45.1
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 4.7e-53 212.2 267 47.2
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 3.0e-52 209.5 261 49.4
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 5.2e-52 208.8 269 42.4
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 1.2e-51 207.6 241 51.5
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 2.6e-51 206.5 269 42.8
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 3.4e-51 206.1 269 43.1
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 7.5e-51 204.9 268 42.9
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 9.8e-51 204.5 269 48.0
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 9.8e-51 204.5 267 46.8
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.3e-50 204.1 266 48.1
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 2.2e-50 203.4 261 42.5
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 3.7e-50 202.6 270 42.6
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 8.3e-50 201.4 266 47.7
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 1.1e-49 201.1 261 41.8
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 1.1e-49 201.1 261 41.8
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.8e-49 200.3 262 44.3
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 9.2e-49 198.0 184 58.7
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 2.0e-48 196.8 262 41.6
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 2.0e-48 196.8 262 41.6
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 2.7e-48 196.4 262 42.0
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 2.7e-48 196.4 262 42.0
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 2.3e-47 193.4 245 51.8
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 2.9e-47 193.0 207 51.2
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 9.5e-46 188.0 177 55.9
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.2e-45 187.6 255 43.9
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.6e-45 187.2 268 42.2
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 2.1e-45 186.8 264 42.4
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 6.1e-45 185.3 178 54.5
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 1.2e-43 181.0 257 40.5
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 9.8e-43 177.9 434 32.7
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 1.3e-42 177.6 179 54.7
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 3.7e-42 176.0 207 52.2
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.1e-41 174.5 337 39.5
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 1.1e-41 174.5 259 42.1
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.4e-41 174.1 238 45.0
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.9e-41 173.7 263 43.3
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 5.4e-41 172.2 232 44.4
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.6e-40 170.6 222 44.6
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 3.5e-40 169.5 267 41.9
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 1.7e-39 167.2 306 35.0
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 1.7e-39 167.2 158 56.3
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 1.5e-38 164.1 217 43.8
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 2.5e-38 163.3 159 54.7
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 9.5e-38 161.4 260 41.9
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 2.3e-36 156.8 154 55.2
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.6e-35 153.3 271 41.3
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 5.8e-35 152.1 224 42.4
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 1.1e-33 147.9 223 43.9
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 3.2e-33 146.4 157 51.0
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 2.3e-28 130.2 104 61.5
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.0e-27 127.1 264 35.6
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 4.4e-27 125.9 158 48.1
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 9.9e-27 124.8 127 52.8
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 1.7e-26 124.0 150 46.0
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 3.5e-24 116.3 207 40.1
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 4.6e-24 115.9 108 55.6
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 5.6e-22 109.0 109 48.6
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.2e-18 97.1 109 46.8
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 9.3e-17 91.7 71 62.0
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 6.0e-16 89.0 78 61.5
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.5e-14 83.6 224 34.4
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 9.6e-14 81.6 93 45.2
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.4e-12 77.8 123 45.5
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 2.2e-10 70.5 100 43.0
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 6.4e-10 68.9 97 46.4
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 4.2e-09 66.2 49 65.3
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 2.7e-08 63.5 83 49.4
Hma1.2p1_1142F.1_g261040 Hydrangea macrophylla HOM05D001248 ORTHO05D001183 6.6e-07 58.9 128 31.2
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 7.3e-06 55.5 33 72.7
Potri.011G001000 Populus trichocarpa HOM05D001248 ORTHO05D001183 7.3e-06 55.5 216 24.5


User provided reference genes

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