Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0587 Ceratophyllum demersum HOM05D003772 ORTHO05D004509 4.2e-66 254.6 132 100.0
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 6.9e-29 131.0 105 67.6
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 3.8e-27 125.2 121 58.7
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 5.0e-27 124.8 128 56.2
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 9.4e-26 120.6 132 56.1
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 2.3e-24 115.9 119 57.1
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 2.3e-24 115.9 106 61.3
PSO541G0621 Papaver somniferum HOM05D003772 ORTHO05D004509 3.0e-24 115.5 120 55.8
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 8.8e-24 114.0 106 60.4
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 8.8e-24 114.0 120 55.0
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 8.8e-24 114.0 114 57.0
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 1.5e-23 113.2 110 60.0
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.6e-23 112.5 106 60.4
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 2.6e-23 112.5 121 55.4
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 4.4e-23 111.7 117 55.6
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 5.7e-23 111.3 128 51.6
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 5.7e-23 111.3 128 51.6
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 5.7e-23 111.3 106 59.4
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 5.7e-23 111.3 106 59.4
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 5.7e-23 111.3 125 50.4
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 9.7e-23 110.5 128 50.8
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.3e-22 110.2 112 58.9
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 1.7e-22 109.8 132 48.5
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 1.7e-22 109.8 115 55.7
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 1.7e-22 109.8 114 54.4
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 1.7e-22 109.8 114 54.4
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 1.7e-22 109.8 107 58.9
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 2.2e-22 109.4 107 57.9
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 2.8e-22 109.0 115 54.8
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 2.8e-22 109.0 114 56.1
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 3.7e-22 108.6 117 54.7
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 4.8e-22 108.2 126 52.4
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 4.8e-22 108.2 132 49.2
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 4.8e-22 108.2 109 56.9
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 4.8e-22 108.2 109 56.9
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 4.8e-22 108.2 109 56.9
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 4.8e-22 108.2 109 56.9
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 8.2e-22 107.5 117 53.0
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 8.2e-22 107.5 117 53.0
MELO3C018731.2 Cucumis melo HOM05D003772 ORTHO05D004509 8.2e-22 107.5 117 51.3
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 8.2e-22 107.5 107 57.0
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 1.1e-21 107.1 133 52.6
RcHm_v2.0_Chr2g0126711 Rosa chinensis HOM05D003772 ORTHO05D004509 1.1e-21 107.1 111 55.9
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 1.1e-21 107.1 139 49.6
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 1.1e-21 107.1 124 50.8
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 1.1e-21 107.1 117 52.1
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 1.8e-21 106.3 108 56.5
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 2.4e-21 105.9 111 56.8
CsaV3_7G004480 Cucumis sativus L. HOM05D003772 ORTHO05D004509 2.4e-21 105.9 117 51.3
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 2.4e-21 105.9 108 56.5
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.4e-21 105.9 117 53.0
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 4.1e-21 105.1 117 51.3
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 4.1e-21 105.1 120 52.5
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 6.9e-21 104.4 110 54.5
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 6.9e-21 104.4 122 53.3
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 9.1e-21 104.0 131 48.9
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 1.2e-20 103.6 114 53.5
Nitab4.5_0011784g0020 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.2e-20 103.6 123 48.8
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 1.2e-20 103.6 113 50.4
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 1.5e-20 103.2 106 56.6
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 1.5e-20 103.2 116 53.4
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 1.5e-20 103.2 116 53.4
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 2.0e-20 102.8 119 50.4
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 2.0e-20 102.8 119 52.1
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 2.0e-20 102.8 120 51.7
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.0e-20 102.8 131 48.1
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 2.0e-20 102.8 108 55.6
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 2.6e-20 102.4 131 48.1
Glyma.12G204900 Glycine max HOM05D003772 ORTHO05D004509 3.4e-20 102.1 120 50.8
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 3.4e-20 102.1 108 54.6
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 3.4e-20 102.1 108 55.6
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 3.4e-20 102.1 108 55.6
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 3.4e-20 102.1 135 46.7
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 4.5e-20 101.7 113 51.3
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 5.9e-20 101.3 112 51.8
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 7.7e-20 100.9 108 52.8
HanXRQChr05g0130551 Helianthus annuus HOM05D003772 ORTHO05D004509 7.7e-20 100.9 106 54.7
MD17G1239700 Malus domestica HOM05D003772 ORTHO05D004509 1.0e-19 100.5 110 51.8
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 1.0e-19 100.5 117 53.0
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.7e-19 99.8 135 46.7
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 2.2e-19 99.4 109 51.4
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 2.9e-19 99.0 109 51.4
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 3.8e-19 98.6 107 52.3
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 8.5e-19 97.4 129 48.1
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 8.5e-19 97.4 108 51.9
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 8.5e-19 97.4 108 53.7
ATR0824G095 Amborella trichopoda HOM05D003772 ORTHO05D004509 1.1e-18 97.1 112 51.8
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 1.1e-18 97.1 117 47.9
Sp7g26290 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.1e-18 97.1 129 47.3
Aa31LG2G22190 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.4e-18 96.7 121 47.1
BcaC09g50489 Brassica carinata HOM05D003772 ORTHO05D004509 1.4e-18 96.7 122 48.4
C01p24810 Brassica napus HOM05D003772 ORTHO05D004509 1.4e-18 96.7 122 48.4
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 2.5e-18 95.9 112 50.0
Thhalv10026455m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 2.5e-18 95.9 129 47.3
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 2.5e-18 95.9 111 49.5
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 2.5e-18 95.9 121 51.2
THA.LOC104804060 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 2.5e-18 95.9 128 48.4
A01p19750 Brassica napus HOM05D003772 ORTHO05D004509 3.2e-18 95.5 122 47.5
BraA01t01906Z Brassica rapa HOM05D003772 ORTHO05D004509 3.2e-18 95.5 122 47.5
HanXRQChr05g0143311 Helianthus annuus HOM05D003772 ORTHO05D004509 3.2e-18 95.5 114 48.2
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 4.2e-18 95.1 112 50.0
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 4.2e-18 95.1 112 50.0
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 4.2e-18 95.1 105 54.3
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 7.2e-18 94.4 102 53.9
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 7.2e-18 94.4 115 47.0
Nn2g11445 Nelumbo nucifera HOM05D003772 ORTHO05D004509 7.2e-18 94.4 113 52.2
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 9.4e-18 94.0 132 44.7
CARHR236040 Cardamine hirsuta HOM05D003772 ORTHO05D004509 9.4e-18 94.0 122 47.5
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 1.2e-17 93.6 114 48.2
THA.LOC104801171 Tarenaya hassleriana HOM05D003772 ORTHO05D004509 1.2e-17 93.6 118 46.6
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 1.6e-17 93.2 112 50.0
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 2.1e-17 92.8 114 49.1
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 2.1e-17 92.8 114 49.1
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 2.1e-17 92.8 97 54.6
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 2.7e-17 92.4 110 49.1
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 2.7e-17 92.4 121 45.5
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 2.7e-17 92.4 108 48.1
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 3.6e-17 92.0 128 46.1
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 4.7e-17 91.7 120 52.5
AUR62042887 Chenopodium quinoa HOM05D003772 ORTHO05D004509 6.1e-17 91.3 114 48.2
Thhalv10008772m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 6.1e-17 91.3 112 50.0
AL7G24270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 8.0e-17 90.9 129 45.7
AT4G28330 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 8.0e-17 90.9 129 45.7
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 8.0e-17 90.9 123 47.2
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 8.0e-17 90.9 123 47.2
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 1.0e-16 90.5 132 42.4
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 1.0e-16 90.5 113 49.6
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 1.0e-16 90.5 113 49.6
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 1.0e-16 90.5 113 49.6
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 1.0e-16 90.5 113 49.6
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 1.0e-16 90.5 113 49.6
Carub.0007s1242 Capsella rubella HOM05D003772 ORTHO05D004509 1.0e-16 90.5 129 46.5
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 1.8e-16 89.7 125 47.2
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 3.0e-16 89.0 87 57.5
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 3.0e-16 89.0 117 50.4
Zm00001eb163400 Zea mays HOM05D003772 ORTHO05D004509 3.0e-16 89.0 126 48.4
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.1e-15 87.0 98 53.1
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 1.5e-15 86.7 77 63.6
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 9.7e-15 84.0 77 59.7
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 9.7e-15 84.0 77 59.7
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 1.3e-14 83.6 69 63.8
AT4G28340 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 1.4e-13 80.1 129 43.4
Eucgr.A01824 Eucalyptus grandis HOM05D003772 ORTHO05D004509 1.8e-13 79.7 91 52.7
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 4.1e-13 78.6 67 61.2
Ah.11g049030 Amaranthus hybridus HOM05D003772 ORTHO05D004509 2.0e-12 76.3 89 48.3
Lalb_Chr22g0356581 Lupinus albus HOM05D003772 ORTHO05D004509 2.0e-12 76.3 116 43.1
BcaC07g38325 Brassica carinata HOM05D003772 ORTHO05D004509 4.5e-12 75.1 104 43.3
C08p10800 Brassica napus HOM05D003772 ORTHO05D004509 4.5e-12 75.1 104 43.3
Eucgr.K01033 Eucalyptus grandis HOM05D003772 ORTHO05D004509 5.9e-12 74.7 111 44.1
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 7.7e-12 74.3 111 42.3
PGR142G3565 Punica granatum HOM05D003772 ORTHO05D004509 2.9e-11 72.4 105 42.9
Sopen10g004170 Solanum pennellii HOM05D000002 ORTHO05D000001 8.5e-11 70.9 82 50.0
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 1.5e-10 70.1 107 45.8
Ah.14g082650 Amaranthus hybridus HOM05D003772 ORTHO05D004509 5.5e-10 68.2 89 44.9
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 5.5e-10 68.2 64 60.9
DCAR_019180 Daucus carota HOM05D003772 ORTHO05D004509 9.4e-10 67.4 92 45.7
BolC8t48755H Brassica oleracea HOM05D003772 ORTHO05D004509 4.0e-08 62.0 120 40.0
HanXRQChr17g0555101 Helianthus annuus HOM05D003772 ORTHO05D004509 8.8e-08 60.8 110 39.1
Rhsim13G0122200 Rhododendron simsii HOM05D003772 ORTHO05D004509 1.5e-07 60.1 74 47.3
Manes.06G110000 Manihot esculenta HOM05D008378 ORTHO05D010346 5.7e-07 58.2 87 46.0
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 1.3e-06 57.0 82 42.7
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 1.7e-06 56.6 52 57.7
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 4.8e-06 55.1 102 39.2
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 4.8e-06 55.1 58 50.0


User provided reference genes

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