Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0516 Ceratophyllum demersum HOM05D006216 ORTHO05D007760 1.2e-233 812.8 400 100.0
CDE08G0663 Ceratophyllum demersum HOM05D006216 ORTHO05D007760 3.8e-187 658.3 382 88.0
Nn7g37015 Nelumbo nucifera HOM05D006216 ORTHO05D007760 2.6e-156 555.8 384 72.9
TAR633G2593 Trochodendron aralioides HOM05D006216 ORTHO05D007760 5.5e-154 548.1 397 69.0
Dinv29341 Davidia involucrata HOM05D006216 ORTHO05D007760 2.7e-153 545.8 400 70.0
Actinidia07007 Actinidia chinensis HOM05D006216 ORTHO05D007760 1.0e-152 543.9 405 69.1
Lj2A825T28 Lonicera japonica HOM05D006216 ORTHO05D007760 2.6e-151 539.3 402 69.4
GSVIVG01037382001 Vitis vinifera HOM05D006216 ORTHO05D007760 1.3e-150 537.0 398 69.8
Aqoxy1G00047 Aquilegia oxysepala HOM05D006216 ORTHO05D007760 2.4e-149 532.7 398 67.6
CSS0004136 Camellia sinensis var. sinensis HOM05D006216 ORTHO05D007760 3.1e-149 532.3 408 68.1
arahy.Tifrunner.gnm1.ann1.G3L2E7 Arachis hypogaea HOM05D006216 ORTHO05D007760 4.1e-149 531.9 397 69.0
Lj6g0023824 Lotus japonicus HOM05D006216 ORTHO05D007760 7.0e-149 531.2 397 69.5
CSS0031944 Camellia sinensis var. sinensis HOM05D006216 ORTHO05D007760 9.1e-149 530.8 397 68.3
Lalb_Chr18g0048331 Lupinus albus HOM05D006216 ORTHO05D007760 9.1e-149 530.8 397 69.5
Haze_23545 Corylus avellana HOM05D006216 ORTHO05D007760 4.5e-148 528.5 398 68.3
Sopen01g004500 Solanum pennellii HOM05D006216 ORTHO05D007760 1.0e-147 527.3 396 67.7
Solyc01g009010.3 Solanum lycopersicum HOM05D006216 ORTHO05D007760 1.3e-147 526.9 396 67.9
SalBow6G4438 Salvia bowleyana HOM05D006216 ORTHO05D007760 1.7e-147 526.6 397 66.2
Hma1.2p1_1843F.1_g305010 Hydrangea macrophylla HOM05D006216 ORTHO05D007760 2.9e-147 525.8 401 69.6
QL01p020730 Quercus lobata HOM05D006216 ORTHO05D007760 2.9e-147 525.8 400 68.5
Rhsim13G0202500 Rhododendron simsii HOM05D006216 ORTHO05D007760 2.9e-147 525.8 407 68.3
Manes.01G176400 Manihot esculenta HOM05D006216 ORTHO05D007760 5.0e-147 525.0 400 70.0
PGSC0003DMG400022703 Solanum tuberosum HOM05D006216 ORTHO05D007760 6.5e-147 524.6 396 67.7
Manes.02G134400 Manihot esculenta HOM05D006216 ORTHO05D007760 1.1e-146 523.9 398 69.8
vmacro04357 Vaccinium macrocarpon HOM05D006216 ORTHO05D007760 1.1e-146 523.9 365 72.3
VMungo1215G0750 Vigna mungo HOM05D006216 ORTHO05D007760 1.1e-146 523.9 367 71.7
CiPaw.13G146100 Carya illinoinensis HOM05D006216 ORTHO05D007760 1.5e-146 523.5 385 70.4
ECA238G2733 Erigeron canadensis HOM05D006216 ORTHO05D007760 3.2e-146 522.3 389 68.9
SGA_v2.0_scaffold79G25547 Striga asiatica HOM05D006216 ORTHO05D007760 3.2e-146 522.3 399 68.7
Cfa010159 Carpinus fangiana HOM05D006216 ORTHO05D007760 4.2e-146 521.9 398 68.1
Glyma.20G046800 Glycine max HOM05D006216 ORTHO05D007760 9.4e-146 520.8 396 67.4
PSO339G5720 Papaver somniferum HOM05D006216 ORTHO05D007760 1.6e-145 520.0 402 66.4
Gohir.A07G119000 Gossypium hirsutum HOM05D006216 ORTHO05D007760 2.1e-145 519.6 346 74.3
Gohir.D07G123300 Gossypium hirsutum HOM05D006216 ORTHO05D007760 2.7e-145 519.2 346 74.3
PGR119G0354 Punica granatum HOM05D006216 ORTHO05D007760 6.1e-145 518.1 396 66.9
CAN.G714.2 Capsicum annuum HOM05D006216 ORTHO05D007760 8.0e-145 517.7 403 65.8
Thecc.09G251000 Theobroma cacao HOM05D006216 ORTHO05D007760 8.0e-145 517.7 334 75.1
Medtr3g437340 Medicago truncatula HOM05D006216 ORTHO05D007760 1.0e-144 517.3 397 68.3
PSO384G3582 Papaver somniferum HOM05D006216 ORTHO05D007760 2.3e-144 516.2 402 66.2
RcHm_v2.0_Chr5g0050131 Rosa chinensis HOM05D006216 ORTHO05D007760 2.3e-144 516.2 376 70.2
arahy.Tifrunner.gnm1.ann1.CPM77E Arachis hypogaea HOM05D006216 ORTHO05D007760 3.0e-144 515.8 342 74.3
Ca_13675_v3 Cicer arietinum L. HOM05D006216 ORTHO05D007760 3.0e-144 515.8 396 67.4
Ciclev10015579m.g Citrus clementina HOM05D006216 ORTHO05D007760 3.0e-144 515.8 334 75.1
MSTRG.12426 Avicennia marina HOM05D006216 ORTHO05D007760 4.0e-144 515.4 401 65.6
TPR.G11861 Trifolium pratense HOM05D006216 ORTHO05D007760 4.0e-144 515.4 396 66.4
Peaxi162Scf00050g02022 Petunia axillaris HOM05D006216 ORTHO05D007760 6.8e-144 514.6 409 66.0
MELO3C015605.2 Cucumis melo HOM05D006216 ORTHO05D007760 1.2e-143 513.8 362 71.5
Gorai.001G133000 Gossypium raimondii HOM05D006216 ORTHO05D007760 1.2e-143 513.8 349 73.6
Nitab4.5_0002300g0020 Nicotiana tabacum HOM05D006216 ORTHO05D007760 1.5e-143 513.5 404 65.3
TWI31G0496 Tripterygium wilfordii HOM05D006216 ORTHO05D007760 1.5e-143 513.5 398 67.3
Thhalv10002004m.g Eutrema salsugineum HOM05D006216 ORTHO05D007760 2.0e-143 513.1 350 72.3
CANSAT54G1188 Cannabis sativa HOM05D006216 ORTHO05D007760 4.4e-143 511.9 368 70.4
BcaB02g10053 Brassica carinata HOM05D006216 ORTHO05D007760 7.5e-143 511.1 339 73.7
Cc01_g07140 Coffea canephora HOM05D006216 ORTHO05D007760 9.8e-143 510.8 402 65.7
Glyma.13G072700 Glycine max HOM05D006216 ORTHO05D007760 9.8e-143 510.8 396 66.2
Potri.001G225100 Populus trichocarpa HOM05D006216 ORTHO05D007760 9.8e-143 510.8 368 70.4
MD03G1163100 Malus domestica HOM05D006216 ORTHO05D007760 2.2e-142 509.6 336 75.0
A07p17910 Brassica napus HOM05D006216 ORTHO05D007760 2.8e-142 509.2 334 74.6
BraA07t29509Z Brassica rapa HOM05D006216 ORTHO05D007760 2.8e-142 509.2 334 74.6
TWI75G0612 Tripterygium wilfordii HOM05D006216 ORTHO05D007760 3.7e-142 508.8 385 68.6
Phvul.006G019500 Phaseolus vulgaris HOM05D006216 ORTHO05D007760 4.8e-142 508.4 365 69.9
Potri.009G021800 Populus trichocarpa HOM05D006216 ORTHO05D007760 8.3e-142 507.7 398 67.1
Sp4g08430 Schrenkiella parvula HOM05D006216 ORTHO05D007760 8.3e-142 507.7 365 69.9
Sc04g0009550 Simmondsia chinensis HOM05D006216 ORTHO05D007760 8.3e-142 507.7 397 64.7
Lsat_1_v5_gn_2_36221 Lactuca sativa HOM05D006216 ORTHO05D007760 1.1e-141 507.3 393 65.6
BolC4t23960H Brassica oleracea HOM05D006216 ORTHO05D007760 1.4e-141 506.9 334 74.3
AT2G26930 Arabidopsis thaliana HOM05D006216 ORTHO05D007760 2.4e-141 506.1 334 74.3
BcaC02g10847 Brassica carinata HOM05D006216 ORTHO05D007760 2.4e-141 506.1 334 74.0
C04p24560 Brassica napus HOM05D006216 ORTHO05D007760 2.4e-141 506.1 334 74.0
CsaV3_1G041900 Cucumis sativus L. HOM05D006216 ORTHO05D007760 3.1e-141 505.8 399 66.7
Eucgr.J00662 Eucalyptus grandis HOM05D006216 ORTHO05D007760 3.1e-141 505.8 351 70.7
Lalb_Chr15g0080191 Lupinus albus HOM05D006216 ORTHO05D007760 3.1e-141 505.8 396 66.2
CARHR119100 Cardamine hirsuta HOM05D006216 ORTHO05D007760 9.1e-141 504.2 334 74.0
FAN21G1147 Fragaria x ananassa HOM05D006216 ORTHO05D007760 1.2e-140 503.8 335 74.3
THA.LOC104816956 Tarenaya hassleriana HOM05D006216 ORTHO05D007760 1.6e-140 503.4 396 65.9
Carub.0004s0743 Capsella rubella HOM05D006216 ORTHO05D007760 2.0e-140 503.1 334 74.0
Duzib168G1114 Durio zibethinus HOM05D006216 ORTHO05D007760 2.0e-140 503.1 364 70.9
AUR62024257 Chenopodium quinoa HOM05D006216 ORTHO05D007760 2.7e-140 502.7 368 69.8
FvH4_3g27650 Fragaria vesca HOM05D006216 ORTHO05D007760 2.7e-140 502.7 335 74.0
FAN11G0826 Fragaria x ananassa HOM05D006216 ORTHO05D007760 2.7e-140 502.7 335 74.0
FAN25G0225 Fragaria x ananassa HOM05D006216 ORTHO05D007760 2.7e-140 502.7 335 74.3
HanXRQChr14g0433421 Helianthus annuus HOM05D006216 ORTHO05D007760 2.7e-140 502.7 379 68.6
AL4G20170 Arabidopsis lyrata HOM05D006216 ORTHO05D007760 3.5e-140 502.3 334 74.0
Atru.BG.104.p Acer truncatum HOM05D006216 ORTHO05D007760 5.9e-140 501.5 313 78.0
Migut.D00703 Erythranthe guttata HOM05D006216 ORTHO05D007760 7.7e-140 501.1 367 65.9
Psat5g182280 Pisum sativum HOM05D006216 ORTHO05D007760 1.0e-139 500.7 340 72.4
Sed0006982 Sechium edule HOM05D006216 ORTHO05D007760 1.3e-139 500.4 400 64.2
Zm00001eb150630 Zea mays HOM05D006216 ORTHO05D007760 3.8e-139 498.8 336 71.7
ATR0782G058 Amborella trichopoda HOM05D006216 ORTHO05D007760 6.5e-139 498.0 335 71.9
Os01g0802100 Oryza sativa ssp. japonica HOM05D006216 ORTHO05D007760 6.5e-139 498.0 351 69.8
Hund25392 Selenicereus undatus HOM05D006216 ORTHO05D007760 1.5e-138 496.9 354 70.9
Sabra16G0133700 Salix brachista HOM05D006216 ORTHO05D007760 9.4e-138 494.2 452 60.0
MSTRG.21323 Avicennia marina HOM05D006216 ORTHO05D007760 2.1e-137 493.0 400 63.0
AUR62005484 Chenopodium quinoa HOM05D006216 ORTHO05D007760 2.7e-137 492.7 329 73.9
Aa31LG5G8850 Aethionema arabicum HOM05D006216 ORTHO05D007760 4.9e-134 481.9 376 64.9
ClCG03G014320 Citrullus lanatus HOM05D006216 ORTHO05D007760 1.1e-130 470.7 362 66.3
DCAR_006327 Daucus carota HOM05D006216 ORTHO05D007760 6.8e-128 461.5 401 64.3
Atru.chr3.2830 Acer truncatum HOM05D006216 ORTHO05D007760 1.2e-127 460.7 354 67.5
Migut.N02401 Erythranthe guttata HOM05D006216 ORTHO05D007760 4.4e-127 458.8 398 60.8
EL10Ac6g13846 Beta vulgaris HOM05D006216 ORTHO05D007760 1.1e-125 454.1 399 61.2
Nitab4.5_0000428g0050 Nicotiana tabacum HOM05D006216 ORTHO05D007760 1.6e-121 440.3 434 56.2
unitig_27.g25131 Utricularia gibba HOM05D006216 ORTHO05D007760 3.1e-120 436.0 333 66.7
HPP92_001661 Vanilla planifolia HOM05D006216 ORTHO05D007760 1.2e-119 434.1 422 55.5
Mapoly0033s0031 Marchantia polymorpha HOM05D006216 ORTHO05D007760 6.0e-116 421.8 388 57.7
SMO367G1046 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 3.9e-115 419.1 320 63.8
Hma1.2p1_1843F.1_g305000 Hydrangea macrophylla HOM05D006216 ORTHO05D007760 2.5e-114 416.4 325 69.5
Pp3c26_490 Physcomitrium patens HOM05D006216 ORTHO05D007760 6.4e-110 401.7 404 53.2
CBR_g22270 Chara braunii HOM05D006216 ORTHO05D007760 6.0e-108 395.2 335 57.9
MBI19_g37419_MAGBIO Magnolia biondii HOM05D006216 ORTHO05D007760 4.7e-105 385.6 330 60.9
AagrBONN_evm.TU.Sc2ySwM_228.3849 Anthoceros agrestis HOM05D006216 ORTHO05D007760 3.7e-102 375.9 308 63.6
Prupe.4G269400 Prunus persica HOM05D006216 ORTHO05D007760 6.4e-102 375.2 271 71.2
SEGI_15556 Sequoiadendron giganteum HOM05D006216 ORTHO05D007760 5.5e-77 292.4 190 73.7
Sabra09G0013700 Salix brachista HOM05D006216 ORTHO05D007760 3.5e-76 289.7 302 55.3
MCO08G209 Micromonas commoda HOM05D006216 ORTHO05D007760 2.3e-75 287.0 280 52.9
PRCOL_00004294 Prasinoderma coloniale HOM05D006216 ORTHO05D007760 3.9e-75 286.2 313 48.2
Cre02.g145050 Chlamydomonas reinhardtii HOM05D006216 ORTHO05D007760 1.4e-72 277.7 343 45.8
Glyma.17G179800 Glycine max HOM05D006216 ORTHO05D007760 1.1e-58 231.5 195 63.1
Hund17544 Selenicereus undatus HOM05D006216 ORTHO05D007760 1.1e-45 188.3 117 76.1
FAN26G0546 Fragaria x ananassa HOM05D006216 ORTHO05D010609 1.9e-45 187.6 114 81.6
SEGI_04634 Sequoiadendron giganteum HOM05D006216 ORTHO05D007760 1.1e-42 178.3 125 66.4
SMO332G0003 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 4.8e-33 146.4 102 67.6
SMO332G0042 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 2.1e-28 131.0 131 53.4
Oeu063625.1 Olea europaea HOM05D006216 ORTHO05D007760 1.6e-23 114.8 127 52.0
Ca_29165_v3 Cicer arietinum L. HOM05D006216 ORTHO05D007760 8.0e-20 102.4 155 40.6
SMO198G0007 Selaginella moellendorffii HOM05D006216 ORTHO05D007760 8.0e-20 102.4 106 50.9
Hund00952 Selenicereus undatus HOM05D006216 ORTHO05D007760 5.9e-15 86.3 86 54.7
DCAR_006325 Daucus carota HOM05D006216 ORTHO05D007760 3.5e-07 60.5 42 61.9


User provided reference genes

Program Settings