Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 1.3e-210 736.1 378 100.0
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 3.1e-82 309.7 661 33.9
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 1.1e-79 301.2 654 33.0
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 2.6e-76 290.0 682 31.8
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 7.4e-76 288.5 667 32.1
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 7.5e-68 261.9 662 30.5
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 2.8e-67 260.0 663 30.6
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 3.7e-67 259.6 665 30.2
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 5.3e-66 255.8 663 31.1
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 7.0e-66 255.4 655 29.2
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 1.0e-64 251.5 658 30.2
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 3.8e-64 249.6 657 30.1
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 5.0e-64 249.2 645 29.6
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 6.5e-64 248.8 652 30.4
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 3.2e-63 246.5 314 44.9
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 9.4e-63 245.0 657 29.5
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 3.6e-62 243.0 657 29.7
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 8.0e-62 241.9 615 30.6
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 1.0e-61 241.5 657 29.5
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.8e-61 240.7 613 30.7
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 3.0e-61 240.0 649 29.3
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 5.2e-61 239.2 647 29.4
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 5.2e-61 239.2 698 28.9
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 2.0e-60 237.3 621 30.3
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 3.4e-60 236.5 666 28.5
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 5.7e-60 235.7 653 28.5
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 9.8e-60 235.0 657 28.9
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.3e-59 234.6 657 28.8
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 2.8e-59 233.4 658 29.5
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 3.7e-59 233.0 602 30.2
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 3.7e-59 233.0 657 27.5
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 4.8e-59 232.6 651 28.6
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 6.3e-59 232.3 672 29.5
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 1.4e-58 231.1 658 28.6
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 1.4e-58 231.1 657 28.5
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 2.4e-58 230.3 667 28.9
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 3.1e-58 229.9 659 28.5
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 9.1e-58 228.4 658 28.7
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 1.2e-57 228.0 663 29.4
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 2.0e-57 227.3 674 28.3
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 2.0e-57 227.3 656 27.7
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 2.7e-57 226.9 656 27.6
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 7.7e-57 225.3 666 29.0
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 1.0e-56 224.9 662 27.3
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 1.3e-56 224.6 671 28.9
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 5.0e-56 222.6 665 29.6
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 6.5e-56 222.2 668 28.1
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 6.5e-56 222.2 335 40.0
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 8.6e-56 221.9 657 28.2
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 1.1e-55 221.5 666 28.7
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 1.1e-55 221.5 662 27.0
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 1.9e-55 220.7 663 28.5
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 4.2e-55 219.5 666 28.1
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 9.5e-55 218.4 663 28.7
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 6.1e-54 215.7 669 28.1
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 2.3e-53 213.8 548 31.6
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 2.3e-53 213.8 663 28.2
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 3.0e-53 213.4 310 38.4
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 1.5e-52 211.1 285 41.4
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 2.6e-52 210.3 656 27.7
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 2.6e-52 210.3 655 28.1
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 3.4e-52 209.9 655 28.2
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 3.4e-52 209.9 656 27.4
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 4.4e-52 209.5 286 41.3
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 1.3e-51 208.0 689 26.3
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 1.3e-51 208.0 656 27.4
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 4.9e-51 206.1 656 28.0
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 1.8e-50 204.1 659 27.8
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.8e-50 204.1 629 26.7
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 1.8e-50 204.1 664 27.6
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 2.7e-49 200.3 663 27.0
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 2.3e-48 197.2 664 27.3
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 2.3e-48 197.2 623 27.9
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 8.6e-48 195.3 318 38.7
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 1.1e-47 194.9 664 27.1
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 5.6e-47 192.6 664 26.8
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 5.6e-47 192.6 305 39.3
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 1.2e-46 191.4 664 27.0
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 3.6e-46 189.9 311 37.3
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 4.7e-46 189.5 664 26.8
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 1.0e-45 188.3 664 25.6
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.4e-45 188.0 652 27.1
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 1.4e-45 188.0 307 37.5
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 1.4e-45 188.0 664 25.9
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 8.9e-45 185.3 307 37.1
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 2.6e-44 183.7 655 26.1
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 2.9e-43 180.3 662 26.9
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 2.4e-42 177.2 602 26.9
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 3.0e-40 170.2 668 24.1
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.2e-34 148.7 664 22.4
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 9.2e-34 148.7 664 22.4
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 6.6e-32 142.5 308 31.2
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 2.5e-23 114.0 135 48.9
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 4.3e-23 113.2 125 51.2
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.8e-21 107.8 136 41.2
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 1.5e-20 104.8 163 38.7
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.3e-19 101.7 260 28.1
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 3.2e-18 97.1 110 45.5
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 1.7e-16 91.3 178 34.8
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 6.6e-16 89.4 123 39.8
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 4.3e-15 86.7 107 47.7
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.0e-12 77.8 83 51.8
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 4.9e-11 73.2 131 34.4
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 6.4e-11 72.8 57 54.4
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 6.4e-11 72.8 81 46.9
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 8.4e-11 72.4 81 46.9
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 7.1e-10 69.3 73 52.1
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 3.0e-08 63.9 165 27.3
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 2.8e-06 57.4 39 66.7


User provided reference genes

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