Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 0.0e+00 1255.0 648 100.0
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 6.5e-197 691.4 648 58.2
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 7.5e-193 677.9 656 57.2
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 3.6e-187 659.1 647 56.0
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 6.1e-187 658.3 648 56.5
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.8e-186 656.8 646 56.0
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 6.3e-184 648.3 642 55.3
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 1.2e-182 644.0 635 56.4
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.0e-182 643.3 638 55.0
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 5.9e-182 641.7 651 54.7
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 4.7e-179 632.1 640 55.3
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 3.0e-178 629.4 635 54.6
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 4.0e-178 629.0 655 54.0
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 8.9e-178 627.9 648 53.7
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.5e-177 627.1 637 54.5
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 1.5e-177 627.1 680 53.5
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 2.6e-177 626.3 632 54.6
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 3.4e-177 625.9 640 54.8
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 5.7e-177 625.2 651 55.6
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.1e-175 620.9 644 53.4
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 2.4e-175 619.8 635 53.9
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 4.1e-175 619.0 640 55.0
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.5e-174 615.9 640 52.8
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 4.6e-174 615.5 647 53.2
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 5.9e-174 615.1 667 51.9
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.3e-173 614.0 647 53.0
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 2.3e-173 613.2 647 52.9
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 6.6e-173 611.7 652 53.4
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 8.6e-173 611.3 637 54.2
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.8e-171 606.3 647 52.2
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 3.6e-171 605.9 644 52.5
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 6.2e-171 605.1 636 52.7
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.2e-169 600.9 636 53.1
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.2e-169 600.9 550 59.6
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 2.6e-169 599.7 643 51.9
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 1.3e-168 597.4 639 54.5
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 1.7e-168 597.0 649 51.6
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 4.9e-168 595.5 643 51.8
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 6.4e-168 595.1 640 52.8
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.1e-167 594.3 643 52.1
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 3.2e-167 592.8 644 51.6
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 3.2e-167 592.8 631 53.4
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 3.2e-167 592.8 644 53.0
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 5.4e-167 592.0 645 51.0
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 9.2e-167 591.3 646 51.2
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 4.6e-166 589.0 645 51.6
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 4.6e-166 589.0 645 51.0
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 6.0e-166 588.6 643 51.6
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 6.0e-166 588.6 642 52.8
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 1.3e-165 587.4 642 52.8
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 2.3e-165 586.6 651 50.8
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 3.0e-165 586.3 566 56.4
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 8.6e-165 584.7 685 48.6
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.5e-164 583.9 646 52.5
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 2.5e-164 583.2 651 51.6
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 2.5e-164 583.2 629 52.6
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 2.5e-164 583.2 648 51.4
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 7.3e-164 581.6 631 52.9
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 6.8e-162 575.1 632 51.4
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 2.0e-161 573.5 641 51.2
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 2.6e-161 573.2 645 50.7
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 3.7e-160 569.3 649 51.5
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 1.9e-159 567.0 558 55.9
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 5.4e-159 565.5 634 50.0
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 3.5e-158 562.8 645 49.6
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 4.6e-158 562.4 636 51.9
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 6.0e-158 562.0 660 48.9
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 1.3e-157 560.8 659 49.0
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 1.7e-157 560.5 646 50.5
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 6.6e-157 558.5 642 50.2
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 1.5e-156 557.4 653 51.1
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 2.5e-156 556.6 642 49.8
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 2.5e-156 556.6 642 49.8
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 7.3e-156 555.1 643 50.4
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.2e-155 554.3 631 49.4
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 1.1e-154 551.2 645 48.5
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 1.4e-154 550.8 641 49.6
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 4.4e-153 545.8 435 62.3
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 9.9e-153 544.7 654 49.1
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 2.9e-152 543.1 641 49.3
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 3.8e-152 542.7 637 48.7
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 9.2e-151 538.1 634 50.3
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 9.2e-151 538.1 634 47.8
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 8.6e-149 531.6 639 48.2
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.9e-148 530.4 646 47.2
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 9.0e-146 521.5 566 52.1
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 1.7e-144 517.3 585 50.8
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 5.4e-143 512.3 632 47.9
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 2.7e-142 510.0 633 47.7
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 3.9e-141 506.1 585 50.6
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 3.8e-136 489.6 644 47.7
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 7.9e-134 481.9 602 46.7
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 1.2e-126 458.0 322 67.7
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 8.2e-123 445.3 610 46.2
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 2.6e-113 413.7 566 45.4
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 5.0e-112 409.5 661 41.1
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 6.5e-112 409.1 433 49.4
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 4.3e-108 396.4 673 40.6
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.2e-96 357.5 256 66.4
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 5.0e-88 329.7 316 52.2
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 1.2e-86 325.1 235 68.1
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 4.9e-59 233.4 212 55.7
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.3e-39 166.4 105 71.4
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.7e-38 163.7 104 72.1
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.9e-37 159.5 104 69.2
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.4e-36 157.1 100 71.0
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 4.3e-31 140.6 311 37.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.9e-26 125.2 84 67.9
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.4e-26 124.8 84 66.7
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 9.0e-21 106.3 237 32.9
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 6.9e-13 80.1 251 27.5
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.7e-09 68.2 69 50.7
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 4.6e-09 67.4 183 33.9
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.2e-06 56.6 70 41.4


User provided reference genes

Program Settings