Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 0.0e+00 1682.5 855 100.0
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 0.0e+00 1100.5 760 78.0
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 2.2e-253 879.4 885 55.4
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.4e-247 859.4 886 54.6
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.1e-241 840.5 859 54.9
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 2.2e-237 826.2 875 53.1
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 1.8e-231 806.6 880 51.1
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 7.0e-231 804.7 887 51.4
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 1.7e-229 800.0 883 52.2
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.9e-228 796.6 888 51.6
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.5e-228 796.2 882 51.5
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 5.5e-228 795.0 879 51.3
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 9.4e-228 794.3 890 51.1
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.2e-222 777.3 866 52.2
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 2.3e-221 773.1 881 51.3
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 1.6e-219 766.9 884 49.9
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 1.4e-218 763.8 879 49.5
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 8.9e-218 761.1 875 50.1
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 4.4e-217 758.8 867 51.3
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 9.8e-217 757.7 869 50.9
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.8e-215 753.4 877 48.8
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 3.1e-215 752.7 870 50.9
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 7.0e-215 751.5 985 46.6
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 7.0e-215 751.5 878 50.5
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.2e-214 750.7 883 49.7
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.2e-214 750.7 884 48.8
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.0e-214 750.0 878 50.3
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.7e-213 746.9 878 49.0
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 2.9e-213 746.1 865 50.5
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 3.9e-213 745.7 881 48.0
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 3.9e-213 745.7 866 50.1
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 6.6e-213 745.0 801 52.1
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.1e-212 744.2 884 50.2
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 2.5e-212 743.0 874 49.5
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 5.6e-212 741.9 946 48.1
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.1e-211 740.0 889 49.7
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 1.4e-210 737.3 878 49.9
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 3.1e-210 736.1 883 49.0
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.0e-210 735.7 878 48.6
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 4.0e-210 735.7 878 49.1
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 6.8e-210 734.9 670 59.6
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 6.8e-210 734.9 891 48.0
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 6.8e-210 734.9 890 47.4
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 8.9e-210 734.6 866 49.2
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 8.9e-210 734.6 884 48.5
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 1.2e-209 734.2 809 51.7
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.4e-209 732.3 871 49.3
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.5e-209 731.5 852 50.0
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 9.8e-209 731.1 788 52.8
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 1.7e-208 730.3 878 48.5
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 3.7e-208 729.2 879 48.2
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 4.9e-208 728.8 763 53.6
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 6.4e-208 728.4 880 46.9
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 1.1e-207 727.6 885 49.7
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 1.4e-207 727.2 899 46.3
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 3.2e-207 726.1 909 46.3
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.0e-205 721.1 881 47.8
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 3.9e-205 719.2 880 47.8
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 6.6e-205 718.4 889 47.4
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.5e-204 717.2 872 48.7
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 2.5e-204 716.5 887 48.5
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 3.3e-204 716.1 878 47.9
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 3.3e-204 716.1 885 47.7
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 1.2e-203 714.1 882 47.6
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 6.2e-203 711.8 879 48.2
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 6.2e-203 711.8 876 48.6
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 8.0e-203 711.4 881 47.7
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.4e-202 710.7 858 47.7
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 3.1e-202 709.5 888 47.3
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 2.0e-201 706.8 875 47.4
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 2.0e-201 706.8 882 46.9
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 2.6e-201 706.4 870 47.9
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 9.8e-201 704.5 874 48.6
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 2.2e-200 703.4 881 48.0
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 6.4e-200 701.8 858 47.0
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 1.9e-199 700.3 739 53.9
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 2.7e-198 696.4 793 49.3
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 4.6e-198 695.7 815 48.3
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 6.6e-197 691.8 879 46.1
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 5.6e-196 688.7 868 47.7
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 9.5e-196 688.0 942 45.0
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 4.0e-194 682.6 854 46.7
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 2.6e-193 679.9 880 46.1
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 7.5e-193 678.3 886 46.0
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.7e-192 677.2 840 48.5
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 1.1e-191 674.5 929 45.1
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 4.1e-191 672.5 887 45.8
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 1.3e-189 667.5 885 45.2
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 1.3e-189 667.5 890 45.3
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 6.6e-189 665.2 886 45.1
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 1.1e-188 664.5 866 46.7
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 1.9e-188 663.7 798 47.7
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 5.6e-188 662.1 809 47.2
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 7.3e-188 661.8 836 47.4
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.6e-187 660.6 890 45.3
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 6.2e-187 658.7 882 44.9
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 8.1e-187 658.3 856 45.7
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 1.1e-186 657.9 887 45.2
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 9.9e-185 651.4 889 44.9
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 3.8e-184 649.4 881 44.7
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 9.3e-183 644.8 761 50.3
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 2.7e-182 643.3 797 45.9
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 4.6e-182 642.5 797 46.0
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 6.0e-182 642.1 797 46.0
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.7e-181 640.6 970 42.9
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 2.8e-179 633.3 812 45.7
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 9.0e-178 628.2 880 43.1
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 3.8e-176 622.9 878 44.2
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 5.1e-173 612.5 606 54.5
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 5.6e-172 609.0 876 43.8
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 5.6e-172 609.0 892 44.2
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 1.6e-171 607.4 882 43.2
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 5.3e-170 602.4 805 44.3
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 6.9e-170 602.1 759 46.2
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 2.6e-169 600.1 810 44.7
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 9.9e-169 598.2 559 57.2
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 2.4e-167 593.6 742 47.4
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.8e-162 577.4 891 42.4
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 9.0e-162 575.1 807 43.7
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.7e-160 570.9 557 56.4
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 3.8e-160 569.7 856 42.5
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 2.9e-152 543.5 876 40.8
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 5.0e-152 542.7 837 41.1
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 5.1e-149 532.7 861 41.2
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 1.0e-144 518.5 455 60.0
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 2.7e-142 510.4 889 39.7
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 4.8e-139 499.6 792 41.4
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 5.9e-137 492.7 1096 33.9
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 1.3e-128 464.9 768 39.7
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 3.5e-121 440.3 821 36.9
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 5.0e-120 436.4 543 46.6
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 4.4e-116 423.3 598 45.3
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 7.7e-113 412.5 504 46.4
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 1.6e-102 378.3 818 33.1
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 1.5e-100 371.7 643 36.2
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 5.0e-96 356.7 565 40.0
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 3.2e-82 310.8 730 32.3
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 2.4e-74 284.6 444 40.1
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 6.4e-59 233.4 290 49.7
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 3.2e-58 231.1 259 53.3
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 5.5e-50 203.8 198 59.1
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 6.0e-49 200.3 346 39.3
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 3.0e-48 198.0 318 39.6
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 4.3e-39 167.5 176 57.4
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 4.6e-33 147.5 138 53.6
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 4.5e-28 131.0 251 37.5
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 2.0e-23 115.5 156 42.9
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 1.4e-21 109.4 188 36.7
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 1.4e-21 109.4 188 36.7
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 1.5e-20 105.9 312 28.2
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 3.3e-15 88.2 90 50.0
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 3.3e-15 88.2 90 50.0
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 8.2e-14 83.6 60 70.0
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 3.1e-13 81.6 107 47.7
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 1.2e-12 79.7 90 46.7
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 7.7e-12 77.0 76 53.9
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 2.2e-11 75.5 183 29.0
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 8.5e-11 73.6 69 58.0
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 5.5e-10 70.9 184 30.4
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 8.8e-08 63.5 171 28.1
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-07 61.6 47 55.3
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 5.7e-07 60.8 94 41.5
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 7.5e-07 60.5 36 83.3
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 9.7e-07 60.1 109 39.4
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-06 59.3 208 22.6
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 2.8e-06 58.5 188 30.9


User provided reference genes

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