Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0183 Ceratophyllum demersum HOM05D004559 ORTHO05D005283 2.0e-103 379.0 182 100.0
CDE02G1201 Ceratophyllum demersum HOM05D004559 ORTHO05D005283 1.8e-96 355.9 180 93.9
HanXRQChr04g0118611 Helianthus annuus HOM05D004559 ORTHO05D005283 3.2e-77 292.0 178 75.8
Lsat_1_v5_gn_7_30060 Lactuca sativa HOM05D004559 ORTHO05D005283 1.4e-75 286.6 178 73.0
Solyc02g070580.1 Solanum lycopersicum HOM05D004559 ORTHO05D005283 1.5e-74 283.1 179 70.9
Sopen02g019670 Solanum pennellii HOM05D004559 ORTHO05D005283 1.5e-74 283.1 179 70.9
Cc09_g09430 Coffea canephora HOM05D004559 ORTHO05D005283 2.8e-73 278.9 179 69.8
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 3.7e-73 278.5 178 71.9
PGSC0003DMG400021157 Solanum tuberosum HOM05D004559 ORTHO05D005283 3.7e-73 278.5 178 70.8
Migut.H01366 Erythranthe guttata HOM05D004559 ORTHO05D005283 4.8e-73 278.1 178 70.2
MSTRG.14771 Avicennia marina HOM05D004559 ORTHO05D005283 1.4e-72 276.6 178 70.8
CAN.G650.2 Capsicum annuum HOM05D004559 ORTHO05D005283 1.4e-72 276.6 179 69.8
Lalb_Chr18g0055551 Lupinus albus HOM05D004559 ORTHO05D005283 1.8e-72 276.2 178 69.7
CSS0018950 Camellia sinensis var. sinensis HOM05D004559 ORTHO05D005283 2.4e-72 275.8 179 70.9
MD05G1285000 Malus domestica HOM05D004559 ORTHO05D005283 2.4e-72 275.8 179 73.2
CiPaw.09G125100 Carya illinoinensis HOM05D004559 ORTHO05D005283 3.1e-72 275.4 179 73.2
ECA236G2101 Erigeron canadensis HOM05D004559 ORTHO05D005283 5.4e-72 274.6 178 71.3
Nitab4.5_0001755g0010 Nicotiana tabacum HOM05D004559 ORTHO05D005283 7.0e-72 274.2 179 68.2
PSO170G5325 Papaver somniferum HOM05D004559 ORTHO05D005283 7.0e-72 274.2 179 71.5
PSO407G0284 Papaver somniferum HOM05D004559 ORTHO05D005283 9.1e-72 273.9 179 72.1
Aqoxy4G00090 Aquilegia oxysepala HOM05D004559 ORTHO05D005283 1.2e-71 273.5 178 71.9
Psat1g190840 Pisum sativum HOM05D004559 ORTHO05D005283 1.2e-71 273.5 178 69.7
Peaxi162Scf01205g00119 Petunia axillaris HOM05D004559 ORTHO05D005283 1.6e-71 273.1 179 70.4
Nn3g20736 Nelumbo nucifera HOM05D004559 ORTHO05D005283 2.7e-71 272.3 179 72.1
Lj6g0026599 Lotus japonicus HOM05D004559 ORTHO05D005283 1.0e-70 270.4 178 71.9
TPR.G35511 Trifolium pratense HOM05D004559 ORTHO05D005283 1.3e-70 270.0 179 69.3
Ca_00552_v3 Cicer arietinum L. HOM05D004559 ORTHO05D005283 1.7e-70 269.6 178 69.1
Rhsim13G0194400 Rhododendron simsii HOM05D004559 ORTHO05D005283 2.2e-70 269.2 178 66.9
arahy.Tifrunner.gnm1.ann1.5ZLV04 Arachis hypogaea HOM05D004559 ORTHO05D005283 3.8e-70 268.5 178 67.4
Nitab4.5_0004023g0020 Nicotiana tabacum HOM05D004559 ORTHO05D005283 3.8e-70 268.5 179 67.6
PSO732G0295 Papaver somniferum HOM05D004559 ORTHO05D005283 3.8e-70 268.5 179 67.0
unitig_0.g931 Utricularia gibba HOM05D004559 ORTHO05D005283 3.8e-70 268.5 178 67.4
PSO675G8299 Papaver somniferum HOM05D004559 ORTHO05D005283 5.0e-70 268.1 179 66.5
PGR083G1233 Punica granatum HOM05D004559 ORTHO05D005283 5.0e-70 268.1 179 69.8
VMungo0540G1851 Vigna mungo HOM05D004559 ORTHO05D005283 5.0e-70 268.1 178 69.1
arahy.Tifrunner.gnm1.ann1.64U7NV Arachis hypogaea HOM05D004559 ORTHO05D005283 6.5e-70 267.7 178 67.4
Eucgr.D00302 Eucalyptus grandis HOM05D004559 ORTHO05D005283 6.5e-70 267.7 184 70.1
MBI10_g02219_MAGBIO Magnolia biondii HOM05D004559 ORTHO05D005283 1.1e-69 266.9 178 69.1
Glyma.15G095000 Glycine max HOM05D004559 ORTHO05D005283 1.9e-69 266.2 179 69.8
DCAR_027922 Daucus carota HOM05D004559 ORTHO05D005283 2.5e-69 265.8 173 71.1
Phvul.006G163800 Phaseolus vulgaris HOM05D004559 ORTHO05D005283 4.2e-69 265.0 178 68.5
QL05p058743 Quercus lobata HOM05D004559 ORTHO05D005283 5.5e-69 264.6 178 71.9
HPP92_024037 Vanilla planifolia HOM05D004559 ORTHO05D005283 7.2e-69 264.2 178 70.2
Haze_05570 Corylus avellana HOM05D004559 ORTHO05D005283 9.4e-69 263.8 179 68.7
Aqoxy1G04198 Aquilegia oxysepala HOM05D004559 ORTHO05D005283 2.7e-68 262.3 179 66.5
Cfa000955 Carpinus fangiana HOM05D004559 ORTHO05D005283 4.7e-68 261.5 179 67.0
RcHm_v2.0_Chr5g0013841 Rosa chinensis HOM05D004559 ORTHO05D005283 4.7e-68 261.5 178 69.7
FAN25G1224 Fragaria x ananassa HOM05D004559 ORTHO05D005283 8.0e-68 260.8 178 69.1
FAN11G0428 Fragaria x ananassa HOM05D004559 ORTHO05D005283 1.4e-67 260.0 178 68.5
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 1.4e-67 260.0 179 66.5
Manes.01G172800 Manihot esculenta HOM05D004559 ORTHO05D005283 1.8e-67 259.6 179 70.4
Ah.14g086460 Amaranthus hybridus HOM05D001706 ORTHO05D005283 3.0e-67 258.8 178 67.4
FvH4_3g05750 Fragaria vesca HOM05D004559 ORTHO05D005283 3.0e-67 258.8 178 68.0
Ah.09g232660 Amaranthus hybridus HOM05D004559 ORTHO05D005283 4.0e-67 258.5 178 65.2
Glyma.13G217400 Glycine max HOM05D004559 ORTHO05D005283 4.0e-67 258.5 179 67.0
CsaV3_6G051670 Cucumis sativus L. HOM05D004559 ORTHO05D005283 5.2e-67 258.1 179 69.3
HPP92_004054 Vanilla planifolia HOM05D004559 ORTHO05D005283 5.2e-67 258.1 176 68.8
Gohir.A05G149100 Gossypium hirsutum HOM05D004559 ORTHO05D005283 6.8e-67 257.7 180 69.4
Potri.004G131700 Populus trichocarpa HOM05D004559 ORTHO05D005283 8.8e-67 257.3 179 70.4
Duzib192G1007 Durio zibethinus HOM05D004559 ORTHO05D005283 1.2e-66 256.9 179 68.7
FAN16G3572 Fragaria x ananassa HOM05D004559 ORTHO05D005283 1.2e-66 256.9 178 67.4
FAN21G2502 Fragaria x ananassa HOM05D004559 ORTHO05D005283 1.5e-66 256.5 178 68.0
ClCG01G024550 Citrullus lanatus HOM05D004559 ORTHO05D005283 2.0e-66 256.1 179 69.3
COL.COLO4_31091 Corchorus olitorius HOM05D004559 ORTHO05D005283 2.0e-66 256.1 179 68.2
MELO3C007140.2 Cucumis melo HOM05D004559 ORTHO05D005283 3.4e-66 255.4 179 68.7
Gohir.A05G149200 Gossypium hirsutum HOM05D004559 ORTHO05D005283 3.4e-66 255.4 179 68.7
Gorai.009G155800 Gossypium raimondii HOM05D004559 ORTHO05D005283 4.4e-66 255.0 180 68.3
Medtr2g019640 Medicago truncatula HOM05D004559 ORTHO05D005283 4.4e-66 255.0 179 66.5
AT2G34500 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 5.7e-66 254.6 179 64.8
CARHR122010 Cardamine hirsuta HOM05D004559 ORTHO05D005283 5.7e-66 254.6 178 62.9
HanXRQChr15g0480071 Helianthus annuus HOM05D004559 ORTHO05D005283 5.7e-66 254.6 178 63.5
Gohir.D05G151700 Gossypium hirsutum HOM05D004559 ORTHO05D005283 7.5e-66 254.2 180 68.9
AL4G30470 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 1.3e-65 253.4 179 66.5
Thhalv10016547m.g Eutrema salsugineum HOM05D004559 ORTHO05D005283 1.3e-65 253.4 179 64.8
Sc17g0004960 Simmondsia chinensis HOM05D004559 ORTHO05D005283 1.3e-65 253.4 179 62.6
Atru.chr10.1255 Acer truncatum HOM05D004559 ORTHO05D005283 2.2e-65 252.7 178 69.7
Cpa.g.sc166.19 Carica papaya HOM05D004559 ORTHO05D005283 2.8e-65 252.3 180 65.0
Sed0018301 Sechium edule HOM05D004559 ORTHO05D005283 3.7e-65 251.9 179 67.6
Manes.02G132100 Manihot esculenta HOM05D004559 ORTHO05D005283 4.9e-65 251.5 179 66.5
THA.LOC104814293 Tarenaya hassleriana HOM05D004559 ORTHO05D005283 8.3e-65 250.8 178 65.7
EL10Ac8g19728 Beta vulgaris HOM05D004559 ORTHO05D005283 1.1e-64 250.4 178 64.0
Thecc.06G152000 Theobroma cacao HOM05D004559 ORTHO05D005283 1.1e-64 250.4 171 70.2
CARHR128590 Cardamine hirsuta HOM05D004559 ORTHO05D005283 1.4e-64 250.0 179 64.2
AUR62018731 Chenopodium quinoa HOM05D004559 ORTHO05D005283 1.4e-64 250.0 178 64.0
Duzib235G0428 Durio zibethinus HOM05D004559 ORTHO05D005283 1.8e-64 249.6 179 65.4
SGA_v2.0_scaffold106G30645 Striga asiatica HOM05D004559 ORTHO05D005283 3.1e-64 248.8 178 62.4
Sp4g16760 Schrenkiella parvula HOM05D004559 ORTHO05D005283 4.1e-64 248.4 179 63.1
AUR62007268 Chenopodium quinoa HOM05D004559 ORTHO05D005283 7.0e-64 247.7 178 63.5
Lj6g0003176 Lotus japonicus HOM05D004559 ORTHO05D005283 7.0e-64 247.7 174 63.8
Carub.0004s1617 Capsella rubella HOM05D004559 ORTHO05D005283 1.2e-63 246.9 179 64.2
Aa31LG10G6900 Aethionema arabicum HOM05D004559 ORTHO05D005283 1.6e-63 246.5 179 62.6
Lalb_Chr18g0055541 Lupinus albus HOM05D004559 ORTHO05D005283 1.6e-63 246.5 179 64.2
TWI73G0246 Tripterygium wilfordii HOM05D004559 ORTHO05D005283 3.5e-63 245.4 179 64.8
Sabra04G0086100 Salix brachista HOM05D004559 ORTHO05D005283 4.5e-63 245.0 179 65.9
Gohir.D05G151600 Gossypium hirsutum HOM05D004559 ORTHO05D005283 1.0e-62 243.8 179 65.9
BcaC02g11512 Brassica carinata HOM05D004559 ORTHO05D005283 1.3e-62 243.4 180 62.8
C04p14530 Brassica napus HOM05D004559 ORTHO05D005283 1.3e-62 243.4 180 62.8
Ciclev10014973m.g Citrus clementina HOM05D004559 ORTHO05D005283 1.7e-62 243.0 173 66.5
SEGI_11062 Sequoiadendron giganteum HOM05D004559 ORTHO05D005283 2.3e-62 242.7 178 61.8
BcaB02g09537 Brassica carinata HOM05D004559 ORTHO05D005283 1.1e-61 240.4 179 62.6
BolC4t23036H Brassica oleracea HOM05D004559 ORTHO05D005283 1.9e-61 239.6 180 61.7
ATR0044G015 Amborella trichopoda HOM05D004559 ORTHO05D005283 2.5e-61 239.2 180 61.7
TAR626G0687 Trochodendron aralioides HOM05D004559 ORTHO05D005283 2.5e-61 239.2 157 70.7
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 5.6e-61 238.0 175 60.6
A05p11180 Brassica napus HOM05D004559 ORTHO05D005283 7.3e-61 237.7 179 62.0
BraA05t20064Z Brassica rapa HOM05D004559 ORTHO05D005283 7.3e-61 237.7 179 62.0
Os01g0210900 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 9.5e-61 237.3 179 59.2
A04p26420 Brassica napus HOM05D004559 ORTHO05D005283 1.2e-60 236.9 179 62.0
C04p63830 Brassica napus HOM05D004559 ORTHO05D005283 1.2e-60 236.9 179 62.0
BcaB06g28777 Brassica carinata HOM05D004559 ORTHO05D005283 1.6e-60 236.5 179 62.0
Gorai.010G166000 Gossypium raimondii HOM05D004559 ORTHO05D005283 3.6e-60 235.3 180 63.3
BolC4t27851H Brassica oleracea HOM05D004559 ORTHO05D005283 4.7e-60 235.0 179 61.5
Gohir.D06G142200 Gossypium hirsutum HOM05D004559 ORTHO05D005283 6.1e-60 234.6 180 61.7
Thhalv10016552m.g Eutrema salsugineum HOM05D004559 ORTHO05D005283 1.0e-59 233.8 179 60.9
CARHR128580 Cardamine hirsuta HOM05D004559 ORTHO05D005283 2.3e-59 232.6 179 62.0
AT2G28850 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 3.0e-59 232.3 179 57.5
Gorai.010G166100 Gossypium raimondii HOM05D004559 ORTHO05D005283 3.0e-59 232.3 180 61.1
AT2G34490 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 5.2e-59 231.5 179 58.7
Os01g0211000 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 5.2e-59 231.5 180 59.4
Os01g0211200 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 5.2e-59 231.5 179 57.0
SMO367G0132 Selaginella moellendorffii HOM05D004559 ORTHO05D005283 1.5e-58 229.9 180 58.9
AL4G23390 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 2.0e-58 229.6 179 57.0
AL4G30460 Arabidopsis lyrata HOM05D004559 ORTHO05D005283 2.0e-58 229.6 179 58.1
Carub.0004s1616 Capsella rubella HOM05D004559 ORTHO05D005283 2.0e-58 229.6 179 57.5
Mapoly0103s0038 Marchantia polymorpha HOM05D004559 ORTHO05D005283 4.4e-58 228.4 178 56.2
HPP92_004048 Vanilla planifolia HOM05D004559 ORTHO05D005283 4.4e-58 228.4 152 70.4
AagrBONN_evm.TU.Sc2ySwM_344.5146 Anthoceros agrestis HOM05D004559 ORTHO05D005283 9.8e-58 227.3 179 58.7
Carub.0004s0985 Capsella rubella HOM05D004559 ORTHO05D005283 2.2e-57 226.1 179 56.4
AT2G28860 Arabidopsis thaliana HOM05D004559 ORTHO05D005283 3.7e-57 225.3 178 56.7
Pp3c1_11690 Physcomitrium patens HOM05D004559 ORTHO05D005283 6.6e-54 214.5 179 55.3
Oeu034159.1 Olea europaea HOM05D004559 ORTHO05D005283 2.5e-53 212.6 142 69.7
Pp3c2_27810 Physcomitrium patens HOM05D004559 ORTHO05D005283 1.2e-52 210.3 179 52.0
Gohir.A06G137102 Gossypium hirsutum HOM05D004559 ORTHO05D005283 3.4e-50 202.2 142 66.2
BraA04t18146Z Brassica rapa HOM05D004559 ORTHO05D005283 2.4e-48 196.1 153 59.5
BcaB06g28776 Brassica carinata HOM05D004559 ORTHO05D005283 1.3e-46 190.3 179 53.1
Mapoly0045s0151 Marchantia polymorpha HOM05D004559 ORTHO05D005283 1.9e-45 186.4 179 48.6
Gorai.009G155600 Gossypium raimondii HOM05D004559 ORTHO05D005283 1.2e-44 183.7 179 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1308 Anthoceros agrestis HOM05D004559 ORTHO05D005283 1.2e-39 167.2 130 57.7
CAN.G170.28 Capsicum annuum HOM05D004559 ORTHO05D005283 3.4e-34 149.1 113 60.2
Gohir.D05G151801 Gossypium hirsutum HOM05D004559 ORTHO05D005283 7.3e-29 131.3 95 68.4
Cre11.g467527 Chlamydomonas reinhardtii HOM05D004559 ORTHO05D005283 1.9e-24 116.7 172 36.6
Os01g0211600 Oryza sativa ssp. japonica HOM05D004559 ORTHO05D005283 4.2e-24 115.5 81 65.4
PRCOL_00005015 Prasinoderma coloniale HOM05D004559 ORTHO05D005283 1.7e-22 110.2 166 36.7
Lj1P1186T35 Lonicera japonica HOM05D004559 ORTHO05D005283 5.1e-22 108.6 71 69.0
Lalb_Chr15g0086901 Lupinus albus HOM05D004559 ORTHO05D005283 2.5e-21 106.3 74 62.2
Prupe.4G079400 Prunus persica HOM05D004559 ORTHO05D005283 8.1e-12 74.7 60 61.7
SalBow7G1213 Salvia bowleyana HOM05D010254 ORTHO05D015184 1.5e-10 70.5 65 46.2
TWI09G0812 Tripterygium wilfordii HOM05D000093 ORTHO05D001309 3.5e-07 59.3 174 26.4


User provided reference genes

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