Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 3.1e-54 214.9 112 100.0
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 8.2e-15 84.0 56 78.6
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.8e-14 82.8 60 76.7
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.8e-14 82.8 46 87.0
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 2.4e-14 82.4 55 74.5
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 2.4e-14 82.4 55 74.5
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 3.1e-14 82.0 46 89.1
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 3.1e-14 82.0 49 79.6
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 4.1e-14 81.6 46 87.0
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 4.1e-14 81.6 46 87.0
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 4.1e-14 81.6 49 79.6
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 5.3e-14 81.3 49 81.6
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 7.0e-14 80.9 46 87.0
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 7.0e-14 80.9 50 82.0
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 7.0e-14 80.9 49 79.6
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 7.0e-14 80.9 49 79.6
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 7.0e-14 80.9 56 75.0
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 9.1e-14 80.5 46 87.0
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 9.1e-14 80.5 50 80.0
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 9.1e-14 80.5 57 73.7
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 9.1e-14 80.5 57 73.7
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 9.1e-14 80.5 57 73.7
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 9.1e-14 80.5 46 80.4
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.2e-13 80.1 50 82.0
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 1.2e-13 80.1 46 84.8
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.2e-13 80.1 70 64.3
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.2e-13 80.1 46 84.8
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 1.2e-13 80.1 50 80.0
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 1.2e-13 80.1 46 84.8
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.6e-13 79.7 46 82.6
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.6e-13 79.7 46 84.8
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.6e-13 79.7 48 81.2
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 2.0e-13 79.3 46 82.6
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 2.0e-13 79.3 46 82.6
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 2.0e-13 79.3 46 82.6
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 2.0e-13 79.3 46 82.6
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 2.0e-13 79.3 48 83.3
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 2.0e-13 79.3 50 80.0
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.0e-13 79.3 50 80.0
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.0e-13 79.3 50 80.0
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 2.0e-13 79.3 50 80.0
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 2.0e-13 79.3 50 80.0
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 2.0e-13 79.3 57 70.2
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 2.7e-13 79.0 46 82.6
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 2.7e-13 79.0 46 82.6
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.7e-13 79.0 46 82.6
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.7e-13 79.0 46 82.6
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.7e-13 79.0 46 82.6
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 2.7e-13 79.0 55 70.9
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.7e-13 79.0 53 71.7
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 2.7e-13 79.0 48 81.2
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.7e-13 79.0 50 76.0
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 2.7e-13 79.0 46 82.6
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 2.7e-13 79.0 46 80.4
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.5e-13 78.6 46 82.6
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.5e-13 78.6 46 82.6
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 3.5e-13 78.6 46 82.6
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 3.5e-13 78.6 46 82.6
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 3.5e-13 78.6 56 71.4
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 4.5e-13 78.2 50 78.0
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 4.5e-13 78.2 50 78.0
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 4.5e-13 78.2 46 82.6
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 4.5e-13 78.2 46 82.6
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 4.5e-13 78.2 46 82.6
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 4.5e-13 78.2 46 80.4
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 4.5e-13 78.2 55 69.1
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 4.5e-13 78.2 82 57.3
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 5.9e-13 77.8 46 80.4
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 5.9e-13 77.8 46 78.3
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 5.9e-13 77.8 48 79.2
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 5.9e-13 77.8 48 79.2
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 7.7e-13 77.4 55 70.9
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 7.7e-13 77.4 46 80.4
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 7.7e-13 77.4 46 82.6
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.0e-12 77.0 46 80.4
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 1.0e-12 77.0 50 78.0
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 1.0e-12 77.0 46 80.4
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.0e-12 77.0 46 78.3
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 1.3e-12 76.6 46 80.4
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 1.3e-12 76.6 46 80.4
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 1.3e-12 76.6 47 74.5
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.3e-12 76.6 46 78.3
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 1.7e-12 76.3 48 79.2
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 1.7e-12 76.3 48 79.2
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.7e-12 76.3 48 77.1
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.7e-12 76.3 46 78.3
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 2.2e-12 75.9 56 69.6
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 2.9e-12 75.5 80 55.0
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 2.9e-12 75.5 57 70.2
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 2.9e-12 75.5 57 70.2
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.9e-12 75.5 50 78.0
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 5.0e-12 74.7 56 73.2
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 6.5e-12 74.3 46 80.4
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 6.5e-12 74.3 44 84.1
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 6.5e-12 74.3 46 76.1
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 8.5e-12 73.9 46 78.3
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.1e-11 73.6 55 65.5
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.5e-11 73.2 46 76.1
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.5e-11 73.2 44 81.8
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 1.9e-11 72.8 50 70.0
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 1.9e-11 72.8 84 54.8
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 2.5e-11 72.4 49 71.4
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 3.2e-11 72.0 46 76.1
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 3.2e-11 72.0 64 57.8
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 4.2e-11 71.6 46 78.3
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 4.2e-11 71.6 52 67.3
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 5.5e-11 71.2 49 71.4
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 7.2e-11 70.9 56 66.1
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 9.4e-11 70.5 49 71.4
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 9.4e-11 70.5 55 63.6
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 9.4e-11 70.5 49 69.4
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 9.4e-11 70.5 56 62.5
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 1.2e-10 70.1 49 69.4
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.2e-10 70.1 49 69.4
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 1.6e-10 69.7 46 71.7
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.6e-10 69.7 46 71.7
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 2.1e-10 69.3 46 71.7
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 2.1e-10 69.3 46 71.7
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 2.1e-10 69.3 46 71.7
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 2.1e-10 69.3 46 71.7
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 2.1e-10 69.3 46 71.7
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.7e-10 68.9 49 69.4
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 3.6e-10 68.6 57 59.6
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 4.7e-10 68.2 46 69.6
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 4.7e-10 68.2 46 69.6
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 4.7e-10 68.2 46 69.6
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 4.7e-10 68.2 46 69.6
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 4.7e-10 68.2 46 69.6
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 4.7e-10 68.2 46 69.6
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 4.7e-10 68.2 56 66.1
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 6.1e-10 67.8 49 67.3
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 1.8e-09 66.2 45 68.9
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 9.8e-08 60.5 49 57.1
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.7e-07 59.7 46 58.7
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 2.2e-07 59.3 44 59.1
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 2.2e-07 59.3 55 52.7
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.8e-07 58.2 46 56.5
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 1.1e-06 57.0 46 58.7
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 3.1e-06 55.5 32 87.5
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.1e-06 55.5 46 71.7


User provided reference genes

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