Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 4.1e-248 860.9 428 100.0
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 5.6e-213 744.2 404 92.6
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 4.8e-71 272.7 449 40.5
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.8e-68 263.1 471 38.0
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 7.9e-66 255.4 400 40.8
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 8.7e-65 251.9 423 39.7
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 4.3e-64 249.6 390 40.0
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 9.7e-64 248.4 424 38.4
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.6e-63 247.7 428 40.2
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 2.2e-63 247.3 425 35.8
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 4.8e-63 246.1 372 40.6
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.1e-62 245.0 423 37.4
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 1.1e-62 245.0 387 38.2
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.4e-62 243.8 455 35.6
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 4.1e-62 243.0 387 40.6
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 5.3e-62 242.7 378 39.7
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 2.0e-61 240.7 417 36.9
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 2.0e-61 240.7 445 36.0
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.0e-61 240.7 426 35.0
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 3.4e-61 240.0 440 36.6
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 4.5e-61 239.6 456 36.4
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.0e-60 238.4 390 38.5
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.0e-60 238.4 446 36.8
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.2e-60 237.3 418 36.6
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 2.9e-60 236.9 441 34.9
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 6.5e-60 235.7 421 35.4
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.9e-59 234.2 398 36.4
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 1.9e-59 234.2 425 37.2
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.9e-59 234.2 427 38.9
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 2.5e-59 233.8 415 37.3
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 5.5e-59 232.6 410 36.8
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 9.4e-59 231.9 362 38.4
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 9.4e-59 231.9 422 35.1
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 1.6e-58 231.1 419 36.8
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 2.1e-58 230.7 412 36.4
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 2.1e-58 230.7 451 35.0
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 2.7e-58 230.3 387 38.8
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 3.6e-58 229.9 385 36.4
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 3.6e-58 229.9 439 36.4
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.6e-58 229.6 427 37.0
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 6.1e-58 229.2 430 35.3
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 7.9e-58 228.8 418 36.1
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.4e-57 228.0 403 34.2
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.8e-57 227.6 407 33.7
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 2.3e-57 227.3 427 36.8
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 3.9e-57 226.5 420 35.0
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.1e-57 226.1 419 35.1
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 8.8e-57 225.3 438 34.7
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 8.8e-57 225.3 432 36.8
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 1.1e-56 224.9 446 35.0
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.5e-56 224.6 389 37.5
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 2.5e-56 223.8 405 34.3
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 2.5e-56 223.8 414 35.7
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 4.3e-56 223.0 475 33.5
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 4.3e-56 223.0 421 34.9
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 5.7e-56 222.6 440 35.7
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 7.4e-56 222.2 445 35.1
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 7.4e-56 222.2 406 34.5
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.8e-55 220.3 445 34.8
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 3.7e-55 219.9 409 36.4
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 3.7e-55 219.9 409 36.4
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 3.7e-55 219.9 409 36.4
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.8e-55 219.5 416 35.8
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 6.3e-55 219.2 411 38.0
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 6.3e-55 219.2 394 36.8
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.3e-55 219.2 393 36.4
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 6.3e-55 219.2 408 35.5
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.1e-54 218.4 440 35.5
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.8e-54 217.6 386 35.8
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 6.9e-54 215.7 290 41.7
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 2.0e-53 214.2 386 37.6
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 2.6e-53 213.8 394 35.0
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 3.4e-53 213.4 419 33.2
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.4e-53 213.4 391 34.3
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 4.5e-53 213.0 431 35.7
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 7.7e-53 212.2 375 37.3
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.0e-52 211.8 386 35.0
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 2.9e-52 210.3 407 35.4
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 5.0e-52 209.5 376 37.0
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 6.5e-52 209.1 287 41.8
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 3.2e-51 206.8 402 37.6
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.2e-51 206.8 421 33.0
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 5.5e-51 206.1 296 40.5
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 9.4e-51 205.3 374 36.6
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 9.4e-51 205.3 370 36.2
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 1.2e-50 204.9 262 44.3
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.2e-50 204.9 402 34.6
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.6e-50 204.5 272 41.2
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.1e-50 204.1 450 34.2
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.1e-50 204.1 450 34.2
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 2.7e-50 203.8 404 35.4
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 3.6e-50 203.4 403 36.2
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 3.6e-50 203.4 403 36.2
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 3.6e-50 203.4 403 36.2
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 4.7e-50 203.0 402 34.1
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 4.7e-50 203.0 360 37.2
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.7e-50 203.0 390 33.8
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 7.9e-50 202.2 365 35.9
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 1.0e-49 201.8 369 36.9
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.0e-49 201.8 414 34.1
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 1.4e-49 201.4 399 35.3
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 1.4e-49 201.4 399 35.3
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 1.4e-49 201.4 398 35.7
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.4e-49 201.4 439 33.3
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 3.0e-49 200.3 283 43.5
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 3.0e-49 200.3 441 32.9
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.0e-49 200.3 281 42.0
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 3.9e-49 199.9 285 43.9
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.1e-49 199.5 413 32.9
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 6.7e-49 199.1 373 35.1
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 2.0e-48 197.6 280 38.9
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 2.6e-48 197.2 273 41.0
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 3.3e-48 196.8 380 34.2
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 1.7e-47 194.5 405 33.8
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 1.7e-47 194.5 285 40.7
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.7e-47 194.5 277 38.6
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 2.2e-47 194.1 385 34.3
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 8.2e-47 192.2 279 39.4
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.1e-46 191.8 285 36.8
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.1e-46 190.3 287 39.0
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 5.3e-46 189.5 373 34.0
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 5.3e-46 189.5 285 36.8
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 9.1e-46 188.7 443 31.6
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 9.1e-46 188.7 284 37.7
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.2e-45 188.3 280 38.6
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 2.6e-45 187.2 389 33.7
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 2.6e-45 187.2 433 32.1
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 1.3e-44 184.9 268 36.9
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.1e-43 181.8 428 31.5
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 7.2e-43 179.1 415 33.0
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.2e-42 178.3 302 38.7
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 2.1e-42 177.6 379 32.2
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.4e-41 174.9 296 38.5
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 2.3e-41 174.1 270 36.3
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 6.3e-39 166.0 281 38.8
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.1e-38 165.2 221 43.4
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.1e-38 163.7 323 33.7
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.0e-38 162.5 445 31.5
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.0e-36 158.7 323 35.3
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.7e-36 157.9 333 32.7
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.5e-35 154.8 341 32.8
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.2e-35 153.7 221 39.8
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.4e-35 152.1 443 28.9
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 3.0e-33 147.1 348 30.7
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.2e-33 146.4 302 32.5
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.2e-32 145.2 306 35.0
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.5e-32 144.8 260 32.3
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 2.8e-31 140.6 157 44.6
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 5.9e-29 132.9 340 30.9
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 7.7e-29 132.5 366 29.5
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.9e-28 130.6 206 37.4
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 1.2e-24 118.6 219 33.8
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.4e-24 117.1 161 37.9
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.4e-24 116.7 161 37.9
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.8e-20 103.6 168 38.1
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.2e-16 92.0 140 38.6
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.7e-16 89.7 91 49.5
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 1.6e-13 81.6 84 45.2
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 1.3e-12 78.6 131 36.6
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 1.8e-09 68.2 144 31.9
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 2.4e-06 57.8 45 62.2


User provided reference genes

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