Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 0.0e+00 1220.7 632 100.0
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.6e-91 341.3 680 36.6
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.8e-82 311.2 692 35.1
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 4.6e-78 296.6 691 34.0
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.5e-76 291.6 691 32.1
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 2.1e-75 287.7 673 34.2
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 2.8e-75 287.3 675 32.9
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 8.9e-74 282.3 689 32.9
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 5.8e-73 279.6 714 31.1
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 7.5e-73 279.3 678 31.3
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.3e-72 278.5 702 32.1
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.7e-72 278.1 673 32.1
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.7e-72 276.9 690 32.5
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 4.1e-71 273.5 739 31.1
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 2.3e-69 267.7 707 31.0
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 8.6e-69 265.8 693 34.1
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.1e-68 265.4 662 32.3
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 5.6e-68 263.1 714 31.1
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 7.3e-68 262.7 723 31.4
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.6e-67 260.4 708 32.1
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 4.7e-67 260.0 692 30.9
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 6.2e-67 259.6 701 32.0
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 8.1e-67 259.2 660 35.0
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.4e-66 258.5 659 32.0
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 2.4e-66 257.7 671 32.5
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 6.8e-66 256.1 707 31.3
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 6.8e-66 256.1 683 32.9
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 8.9e-66 255.8 732 31.3
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 8.9e-66 255.8 676 32.2
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.2e-65 255.4 664 32.1
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 4.4e-65 253.4 733 32.5
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.3e-64 251.9 668 31.7
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 2.9e-64 250.8 698 31.4
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.1e-63 248.8 719 31.8
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.1e-63 248.8 666 30.2
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 7.1e-63 246.1 711 30.2
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.2e-62 245.4 699 31.0
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 1.2e-62 245.4 712 33.3
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 2.7e-62 244.2 711 30.5
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.3e-61 241.9 749 29.5
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 5.1e-61 240.0 752 30.5
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 5.1e-61 240.0 604 31.0
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 7.3e-60 236.1 736 30.4
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 9.6e-60 235.7 716 29.3
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.6e-59 235.0 684 31.6
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 4.7e-59 233.4 577 30.5
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 8.1e-59 232.6 664 30.7
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.1e-58 232.3 731 30.4
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 2.4e-58 231.1 670 31.0
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 3.1e-58 230.7 718 30.8
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 6.9e-58 229.6 683 31.3
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 6.9e-58 229.6 714 30.0
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.2e-57 228.8 733 27.8
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.2e-57 228.8 626 30.5
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.5e-57 228.4 725 29.5
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 2.0e-57 228.0 675 32.0
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 2.0e-57 228.0 737 28.4
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.4e-57 227.3 744 29.3
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 3.4e-57 227.3 668 31.4
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 3.4e-57 227.3 662 30.8
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.8e-57 226.5 652 28.5
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 7.6e-57 226.1 663 31.5
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 2.2e-56 224.6 694 29.7
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 6.4e-56 223.0 739 29.1
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 8.4e-56 222.6 666 32.0
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-55 222.2 732 29.1
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 4.2e-55 220.3 696 32.2
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 3.5e-54 217.2 656 30.5
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 4.6e-54 216.9 729 28.3
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 4.6e-54 216.9 688 30.1
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 7.8e-54 216.1 664 29.5
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.3e-53 215.3 768 27.0
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.3e-53 215.3 778 30.1
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-52 212.2 729 27.8
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.3e-52 210.7 673 27.8
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 7.3e-52 209.5 756 28.6
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 9.6e-52 209.1 663 30.6
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 9.6e-52 209.1 674 29.1
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 3.6e-51 207.2 668 30.4
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 2.4e-50 204.5 668 29.9
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 6.9e-50 203.0 666 30.8
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 9.0e-50 202.6 691 31.5
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.5e-49 201.8 741 26.6
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 2.0e-49 201.4 675 29.5
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 2.6e-49 201.1 669 29.0
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 4.5e-49 200.3 689 28.9
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 4.5e-49 200.3 696 28.9
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.7e-48 198.4 706 27.6
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 3.2e-47 194.1 557 29.6
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.6e-46 190.3 725 28.4
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 7.9e-46 189.5 653 28.0
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.0e-45 189.1 733 26.6
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.1e-44 185.7 671 28.3
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.1e-44 185.7 627 30.0
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.9e-44 184.9 671 27.3
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.6e-43 181.8 643 29.5
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.1e-43 181.4 740 30.4
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.8e-43 181.0 534 29.0
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 1.4e-42 178.7 758 25.6
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.2e-41 175.6 743 25.7
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.5e-41 175.3 644 26.6
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.5e-41 175.3 531 28.2
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 2.6e-41 174.5 363 33.1
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 3.4e-41 174.1 536 31.5
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 2.2e-40 171.4 342 33.6
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 3.8e-40 170.6 848 26.4
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 3.8e-40 170.6 772 26.0
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.1e-39 169.1 837 25.3
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 5.5e-39 166.8 834 27.3
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 6.0e-38 163.3 544 29.8
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.3e-37 161.4 696 26.6
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 3.0e-37 161.0 673 27.6
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.0e-37 161.0 823 26.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 3.3e-36 157.5 579 28.2
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 3.3e-36 157.5 665 25.4
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 3.3e-36 157.5 357 34.7
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 8.2e-35 152.9 870 26.8
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 5.8e-33 146.7 714 26.6
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.7e-32 145.2 641 28.2
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 2.9e-32 144.4 605 27.6
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.8e-29 135.2 730 23.6
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 3.3e-28 131.0 284 34.5
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 4.8e-27 127.1 307 34.5
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.1e-26 125.9 212 40.1
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.0e-24 119.4 416 27.6
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 2.2e-24 118.2 393 30.0
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 8.5e-24 116.3 707 22.8
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.1e-23 115.9 506 28.7
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 4.6e-22 110.5 479 25.3
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.1e-22 110.2 174 42.5
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.3e-21 108.2 123 45.5
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.2e-17 95.9 201 31.8
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.5e-17 95.5 326 29.1
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.5e-17 95.5 248 31.9
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.0e-17 95.1 249 32.5
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 7.7e-17 93.2 86 50.0
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 5.0e-16 90.5 86 48.8
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 8.5e-16 89.7 86 47.7
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.4e-15 89.0 289 28.4
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 7.2e-15 86.7 248 30.2
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 4.7e-14 84.0 87 46.0
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 6.1e-14 83.6 271 29.9
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 1.4e-13 82.4 453 24.7
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 2.3e-13 81.6 245 33.1
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 5.7e-12 77.0 308 29.5
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.7e-11 75.5 587 22.3
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.2e-11 75.1 189 31.7
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.8e-11 73.9 189 31.7
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 7.0e-10 70.1 88 44.3
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 1.5e-09 68.9 345 29.6
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.5e-09 68.9 345 29.6
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.5e-09 68.9 146 29.5
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.6e-09 68.2 145 30.3
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 5.9e-09 67.0 84 35.7
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.0e-08 66.2 79 46.8
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.7e-08 65.5 229 30.1
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.9e-07 62.0 326 28.5
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.2e-07 61.2 292 26.4
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 2.1e-06 58.5 60 40.0
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.6e-06 57.8 65 44.6


User provided reference genes

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