Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 0.0e+00 1414.1 791 100.0
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 7.6e-256 887.5 1007 52.0
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 3.5e-253 878.6 1007 51.8
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 3.0e-252 875.5 1007 51.4
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 5.1e-252 874.8 1007 51.5
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 5.6e-251 871.3 1020 50.5
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 3.4e-248 862.1 990 51.5
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 1.1e-246 857.1 1007 50.7
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 1.8e-244 849.7 1007 50.0
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 3.0e-244 849.0 1007 49.7
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 3.9e-244 848.6 1007 52.1
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 3.9e-244 848.6 1007 49.8
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 9.6e-243 844.0 945 51.9
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 2.8e-242 842.4 1014 51.8
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 4.8e-242 841.6 1007 50.2
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 2.4e-241 839.3 1007 49.8
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 1.5e-240 836.6 1008 50.2
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 2.0e-240 836.3 1002 49.7
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 4.5e-240 835.1 1011 50.1
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 4.5e-240 835.1 1007 50.6
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 5.8e-240 834.7 1007 50.0
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 1.3e-239 833.6 1007 49.5
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 3.8e-239 832.0 1014 48.8
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 4.9e-239 831.6 1005 50.1
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 2.4e-238 829.3 1014 51.2
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 2.4e-238 829.3 1008 49.5
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 3.2e-238 828.9 1007 52.0
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 3.5e-237 825.5 990 49.8
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 4.6e-237 825.1 1007 49.0
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 1.0e-236 823.9 1007 49.0
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 1.3e-236 823.5 990 49.8
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 3.0e-236 822.4 1007 49.0
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 8.7e-236 820.8 996 49.3
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 1.1e-235 820.5 1014 48.4
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 1.1e-235 820.5 1001 49.4
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 1.1e-235 820.5 1007 49.4
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 9.6e-235 817.4 1007 49.1
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 1.3e-234 817.0 1007 49.2
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 2.1e-234 816.2 1007 51.6
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 4.8e-234 815.1 1002 51.1
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 1.1e-233 813.9 1014 49.8
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 3.1e-233 812.4 1029 48.2
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 4.0e-233 812.0 1008 51.6
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 3.4e-232 808.9 1007 48.3
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 4.5e-232 808.5 1007 48.2
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 7.6e-232 807.7 1007 50.1
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.0e-231 807.4 1007 48.4
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 1.0e-231 807.4 1014 47.4
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.3e-231 807.0 1007 49.1
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 2.2e-231 806.2 1014 51.1
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.2e-231 806.2 984 50.9
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.9e-231 805.8 1007 50.0
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.8e-231 805.4 1007 48.3
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 1.1e-230 803.9 1005 51.1
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 1.9e-230 803.1 1096 46.2
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 1.9e-230 803.1 1009 51.2
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 2.1e-229 799.7 1001 50.7
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 4.6e-229 798.5 1010 51.1
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 1.5e-227 793.5 990 51.4
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 2.8e-226 789.3 828 58.0
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 6.3e-226 788.1 1003 47.3
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 8.2e-226 787.7 970 49.2
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 2.4e-225 786.2 976 48.7
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 6.9e-225 784.6 1014 49.7
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 1.0e-223 780.8 1007 49.7
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 1.6e-221 773.5 1014 48.9
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 7.9e-221 771.2 1010 49.1
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 8.8e-220 767.7 1007 50.0
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 3.2e-214 749.2 1000 49.9
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 7.2e-214 748.0 825 54.5
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 4.5e-208 728.8 820 51.8
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 5.9e-208 728.4 995 47.9
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 2.2e-207 726.5 1054 43.8
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 3.8e-207 725.7 1004 45.5
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 2.5e-206 723.0 1004 47.0
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 1.6e-205 720.3 1007 47.0
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 3.6e-205 719.2 1008 47.1
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 6.1e-205 718.4 1004 46.7
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 1.4e-204 717.2 997 47.1
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 8.8e-204 714.5 996 47.1
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 3.3e-203 712.6 996 46.9
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 5.7e-203 711.8 1004 44.6
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 3.7e-202 709.1 995 46.7
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 3.7e-202 709.1 995 46.7
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 5.3e-201 705.3 1004 47.2
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 1.9e-198 696.8 770 55.8
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 9.4e-198 694.5 840 49.8
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 2.1e-197 693.3 1007 45.9
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 3.0e-196 689.5 1005 45.4
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 7.5e-195 684.9 828 51.2
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 2.7e-192 676.4 801 48.7
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 5.5e-190 668.7 828 48.2
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 2.7e-189 666.4 1008 42.5
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 6.1e-189 665.2 828 48.1
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 1.4e-188 664.1 760 52.2
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 1.8e-188 663.7 760 52.4
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 1.8e-188 663.7 760 52.4
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 6.8e-188 661.8 945 45.0
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 7.0e-185 651.7 796 47.2
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 7.2e-182 641.7 1004 41.8
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.8e-180 637.1 748 51.3
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 1.1e-177 627.9 776 51.5
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 3.3e-174 616.3 950 41.2
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.8e-164 583.9 684 48.2
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.2e-157 561.2 771 46.8
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 4.7e-157 559.3 790 45.1
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 4.0e-148 529.6 928 40.1
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 7.3e-142 508.8 503 53.3
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 1.4e-140 504.6 658 53.0
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 2.6e-139 500.4 659 44.3
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 9.1e-100 369.0 595 39.2
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 5.1e-95 353.2 708 33.9
SEGI_04281 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.5e-91 341.7 391 49.4
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 2.9e-90 337.4 426 45.5
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 2.1e-88 331.3 503 45.9
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 4.7e-80 303.5 615 35.3
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 4.0e-71 273.9 371 48.8
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.3e-69 268.9 286 51.4
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 3.1e-68 264.2 371 48.0
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 1.7e-42 178.7 392 39.5
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 5.6e-41 173.7 141 63.1
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 6.0e-35 153.7 151 51.0
Actinidia26096 Actinidia chinensis HOM05D003193 ORTHO05D023334 5.1e-34 150.6 188 44.1
Lsat_1_v5_gn_2_111060 Lactuca sativa HOM05D003193 ORTHO05D000541 5.1e-26 124.0 126 54.8
SEGI_09842 Sequoiadendron giganteum HOM05D003193 ORTHO05D036451 1.1e-20 106.3 80 63.8
Ah.02g118650 Amaranthus hybridus HOM05D003193 ORTHO05D004924 1.7e-18 99.0 72 69.4
DCAR_029995 Daucus carota HOM05D003193 ORTHO05D023334 1.9e-17 95.5 68 60.3
DCAR_032356 Daucus carota HOM05D003193 ORTHO05D023334 1.9e-17 95.5 68 60.3
Lsat_1_v5_gn_8_87461 Lactuca sativa HOM05D003193 ORTHO05D000541 5.3e-15 87.4 115 48.7
Manes.08G142350 Manihot esculenta HOM05D003193 ORTHO05D023334 6.9e-15 87.0 93 48.4
Nitab4.5_0019712g0020 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.2e-11 76.3 49 81.6
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 6.7e-10 70.5 83 48.2
PSO104G0170 Papaver somniferum HOM05D003193 ORTHO05D000001 4.8e-08 64.3 39 76.9
Actinidia23236 Actinidia chinensis HOM05D003193 ORTHO05D055714 2.6e-06 58.5 64 54.7


User provided reference genes

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